Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001058

Physical Location & Seq

Genomic Coordinates Forward (+)

57386273 .. 57386684

Gene Structure 412 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ51050

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGGCCACAGCTTACATTGCAGCCTCATGGATAATCATACCACATGGACGTGGTGAAGGAGAAAATTGGACCCTTGAAGTTCTGATATCTGTGTGTGCAGGGACCATGGGATCTGTTTTTTTCTTTCTTGGTGTCACATGGACTAGACACTTGTTGATGAAAATGAAATGGAGGAAACAAATACGTAAGACTGCAGAGGAGAGAGCACAAAGACAAGCAGCAAGAGCACAGAAACGAACACAAAAACGAGCACATAAAAGGGCACAGAGAAGAACAGAGGAAACACCAGAATACAGCTCATCAGTATCCACGAACTCCCATGCTGAGAGTTTTGAAGAACTAGGATATCATACATACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_4 Ank_5 PGG

Protein Analysis

119

Amino Acids

13.77

Weight (kDa)

10.07

Isoelectric Point (pI)

37.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001058)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50140 AT5G54710 AT5G54710
fragaria_vesca	FvH4_6g32122 FvH4_6g32123
prunus_persica	Prupe.3G061800_v2.0.a1 Prupe.3G061800_v2.0.a1 Prupe.3G062200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0139931 RchiOBHm_Chr2g0139941 RchiOBHm_Chr2g0139951 RchiOBHm_Chr2g0139971 RchiOBHm_Chr2g0139981 RchiOBHm_Chr2g0139991 RchiOBHm_Chr2g0140001 RchiOBHm_Chr2g0140011 RchiOBHm_Chr2g0140021 RchiOBHm_Chr6g0309561
rosa_laevigata	RLG00000010553 RLG00000019839 RLG00000019840 RLG00000019841 RLG00000019842
rosa_multiflora	Rmu_co8276735.1_g000001 Rmu_co8522085.1_g000001 Rmu_sc0000545.1_g000024 Rmu_sc0000545.1_g000026 Rmu_sc0000545.1_g000027 Rmu_sc0003101.1_g000002 Rmu_sc0007283.1_g000013 Rmu_sc0030536.1_g000003
rosa_roxburghii	Rroxscaffold_2G00105140 Rroxscaffold_2G00105150
rosa_rugosa	Rorug02G0360300 Rorug02G0360400 Rorug02G0360500
rosa_samantha	Rh2AG410600 Rh2AG410900 Rh2AG411000 Rh2AG411100 Rh2BG420800 Rh2BG420900 Rh2BG421000 Rh2BG421100 Rh2BG421200 Rh2BG421300 Rh2CG396700 Rh2CG396900 Rh2CG397100 Rh2CG397200 Rh2DG430300 Rh2DG430500 Rh2DG430800 Rh6AG486300 Rh6BG495700
rosa_wichuraiana	Rw2G033340 Rw2G033550 Rw2G033650 Rw2G033660 Rw2G033670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	118
AcoI	YGGCCR	1 cut(s)	3
AgsI	TTSAA	2 cut(s)	77, 335
AjiI	CACGTC	1 cut(s)	50
AluBI	AGCT	2 cut(s)	11, 297
AluI	AGCT	2 cut(s)	11, 297
Alw21I	GWGCWC	3 cut(s)	208, 229, 253
AlwI	GGATC	1 cut(s)	118
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	2 cut(s)	20, 218
AspS9I	GGNCC	2 cut(s)	69, 102
AsuHPI	GGTGA	1 cut(s)	65
AvaII	GGWCC	2 cut(s)	69, 102
BaeGI	GKGCMC	1 cut(s)	265
BalI	TGGCCA	1 cut(s)	5
Bbv12I	GWGCWC	3 cut(s)	208, 229, 253
BbvI	GCAGC	2 cut(s)	32, 230
BciVI	GTATCC	1 cut(s)	316
BfaI	CTAG	2 cut(s)	144, 341
BfmI	CTRYAG	1 cut(s)	192
BfuI	GTATCC	1 cut(s)	316
BisI	GCNGC	2 cut(s)	21, 219
BlsI	GCNGC	2 cut(s)	22, 220
Bme18I	GGWCC	2 cut(s)	69, 102
BmgBI	CACGTC	1 cut(s)	50
BmgT120I	GGNCC	2 cut(s)	69, 102
BmiI	GGNNCC	2 cut(s)	71, 103
BsaAI	YACGTR	1 cut(s)	185
BsaJI	CCNNGG	1 cut(s)	105
Bse3DI	GCAATG	1 cut(s)	15
BseDI	CCNNGG	1 cut(s)	105
BseMI	GCAATG	1 cut(s)	15
BseMII	CTCAG	1 cut(s)	315
BseRI	GAGGAG	1 cut(s)	212
BseSI	GKGCMC	1 cut(s)	265
BseXI	GCAGC	2 cut(s)	32, 230
BsgI	GTGCAG	1 cut(s)	117
BshFI	GGCC	1 cut(s)	5
BsiHKAI	GWGCWC	3 cut(s)	208, 229, 253
BslFI	GGGAC	1 cut(s)	115
BsmFI	GGGAC	1 cut(s)	115
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	4 cut(s)	208, 229, 253, 265
Bsp143I	GATC	1 cut(s)	110
Bsp19I	CCATGG	1 cut(s)	105
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	316
BspLI	GGNNCC	2 cut(s)	71, 103
BspMAI	CTGCAG	1 cut(s)	196
BspPI	GGATC	1 cut(s)	118
BsrDI	GCAATG	1 cut(s)	15
BssECI	CCNNGG	1 cut(s)	105
BssMI	GATC	1 cut(s)	110
BssT1I	CCWWGG	1 cut(s)	105
BstBAI	YACGTR	1 cut(s)	185
BstDEI	CTNAG	1 cut(s)	324
BstDSI	CCRYGG	1 cut(s)	105
BstKTI	GATC	1 cut(s)	113
BstMBI	GATC	1 cut(s)	110
BstMWI	GCNNNNNNNGC	2 cut(s)	17, 224
BstSFI	CTRYAG	1 cut(s)	192
BstSLI	GKGCMC	1 cut(s)	265
BstSNI	TACGTA	1 cut(s)	185
BstV1I	GCAGC	2 cut(s)	32, 230
BstX2I	RGATCY	1 cut(s)	110
BstYI	RGATCY	1 cut(s)	110
BsuI	GTATCC	1 cut(s)	316
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	105
BtrI	CACGTC	1 cut(s)	50
Cfr13I	GGNCC	2 cut(s)	69, 102
CviAII	CATG	5 cut(s)	27, 44, 106, 138, 320
CviJI	RGCY	4 cut(s)	5, 11, 23, 297
CviKI_1	RGCY	4 cut(s)	5, 11, 23, 297
DdeI	CTNAG	1 cut(s)	324
DpnI	GATC	1 cut(s)	112
DpnII	GATC	1 cut(s)	110
EaeI	YGGCCR	1 cut(s)	3
Eco105I	TACGTA	1 cut(s)	185
Eco130I	CCWWGG	1 cut(s)	105
Eco32I	GATATC	2 cut(s)	87, 347
Eco47I	GGWCC	2 cut(s)	69, 102
EcoRV	GATATC	2 cut(s)	87, 347
EcoT14I	CCWWGG	1 cut(s)	105
ErhI	CCWWGG	1 cut(s)	105
FaeI	CATG	5 cut(s)	30, 47, 109, 141, 323
FaiI	YATR	9 cut(s)	28, 38, 45, 107, 139, 255, 321, 351, 355
FaqI	GGGAC	1 cut(s)	115
FatI	CATG	5 cut(s)	26, 43, 105, 137, 319
Fnu4HI	GCNGC	2 cut(s)	21, 219
Fsp4HI	GCNGC	2 cut(s)	21, 219
FspBI	CTAG	2 cut(s)	144, 341
GluI	GCNGC	2 cut(s)	21, 219
HaeIII	GGCC	1 cut(s)	5
Hin1II	CATG	5 cut(s)	30, 47, 109, 141, 323
HphI	GGTGA	1 cut(s)	65
Hpy188I	TCNGA	1 cut(s)	84
HpyAV	CCTTC	1 cut(s)	50
HpyCH4IV	ACGT	2 cut(s)	49, 184
HpyCH4V	TGCA	3 cut(s)	20, 98, 194
HpyF10VI	GCNNNNNNNGC	2 cut(s)	17, 224
HpyF3I	CTNAG	1 cut(s)	324
HpySE526I	ACGT	2 cut(s)	49, 184
Hsp92II	CATG	5 cut(s)	30, 47, 109, 141, 323
Kzo9I	GATC	1 cut(s)	110
LpnPI	CCDG	2 cut(s)	84, 300
Lsp1109I	GCAGC	2 cut(s)	32, 230
MaeI	CTAG	2 cut(s)	144, 341
MaeII	ACGT	2 cut(s)	49, 184
MaeIII	GTNAC	1 cut(s)	133
MalI	GATC	1 cut(s)	112
MboI	GATC	1 cut(s)	110
MboII	GAAGA	2 cut(s)	282, 347
MflI	RGATCY	1 cut(s)	110
MhlI	GDGCHC	4 cut(s)	208, 229, 253, 265
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	64
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	4 cut(s)	34, 165, 190, 271
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MslI	CAYNNNNRTG	1 cut(s)	48
Msp20I	TGGCCA	1 cut(s)	5
MwoI	GCNNNNNNNGC	2 cut(s)	17, 224
NcoI	CCATGG	1 cut(s)	105
NdeII	GATC	1 cut(s)	110
NlaIII	CATG	5 cut(s)	30, 47, 109, 141, 323
NlaIV	GGNNCC	2 cut(s)	71, 103
NmuCI	GTSAC	1 cut(s)	133
PkrI	GCNGC	2 cut(s)	22, 220
Ppu21I	YACGTR	1 cut(s)	185
PspN4I	GGNNCC	2 cut(s)	71, 103
PspPI	GGNCC	2 cut(s)	69, 102
PstI	CTGCAG	1 cut(s)	196
PsuI	RGATCY	1 cut(s)	110
RseI	CAYNNNNRTG	1 cut(s)	48
SatI	GCNGC	2 cut(s)	21, 219
Sau3AI	GATC	1 cut(s)	110
Sau96I	GGNCC	2 cut(s)	69, 102
SduI	GDGCHC	4 cut(s)	208, 229, 253, 265
SetI	ASST	4 cut(s)	13, 52, 187, 299
SfcI	CTRYAG	1 cut(s)	192
SinI	GGWCC	2 cut(s)	69, 102
SmiMI	CAYNNNNRTG	1 cut(s)	48
SnaBI	TACGTA	1 cut(s)	185
Sse9I	AATT	1 cut(s)	64
SspMI	CTAG	2 cut(s)	144, 341
StyI	CCWWGG	1 cut(s)	105
TaiI	ACGT	2 cut(s)	52, 187
TasI	AATT	1 cut(s)	64
TseFI	GTSAC	1 cut(s)	133
TseI	GCWGC	2 cut(s)	20, 218
Tsp45I	GTSAC	1 cut(s)	133
TspDTI	ATGAA	2 cut(s)	173, 179
VpaK11BI	GGWCC	2 cut(s)	69, 102
XspI	CTAG	2 cut(s)	144, 341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.