Rh6AG486300

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0001058
Physical Location & Seq
Forward (+)
66488979 .. 66489527
549 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG486300.1

Sequence Viewer

Length: 549 bp
ATGGGGCGTATGGCTCGAAACAATCAACAGATGAAACACTTCGCGACAGTACAAGCAAAGATGAATCCCGGTCATGATGTTTTAATGAATTCTGACGTTCTTTTTAGAGGGACAGTGGATAAAACTAGGCAATATGAGATATATAGAGAGGCATTGCAAAATACTAGGACCACTATCACAATAGTTGCTGTTTTGACTGACTCAGTTACTTATACTGCTGGCATAAACCCACCTTGTGGTGTCTACCAGGAGGGATGGCTTAAAGGACAGTCAATATACAGTTGGCAGAACAACAGCTTTAAGGTCTTCACAATAAGCAACACAGCGGCATTGTTCATATCTATGTGCATTGTCATTGTGTTGGTGAGCATCATTCCCTTCCGGCGAAAATCACTGATGATCGACACTACTTGTGGTTGCTCACAAAGTCTTGTTGGTGGCAGTGTCACTCATGTTGCTCACAAAGTCTTGTTGGTGACACTGCAGCCTCATGGATATTCATGCCACATGGACGTGGTGAAGGAGAAAATTGGACCCTTGAAGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 Ank_4 Ank_5 PGG

Protein Analysis

182

Amino Acids

20.28

Weight (kDa)

9.42

Isoelectric Point (pI)

23.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGG PF13962 50 - 130 2.2e-20 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 236
AccI GTMKAC 1 cut(s) 243
AccII CGCG 1 cut(s) 44
AciI CCGC 1 cut(s) 326
AcsI RAATTY 1 cut(s) 88
AdeI CACNNNGTG 1 cut(s) 236
AfaI GTAC 1 cut(s) 51
AfiI CCNNNNNNNGG 1 cut(s) 236
AgsI TTSAA 1 cut(s) 541
AjiI CACGTC 1 cut(s) 514
AjnI CCWGG 1 cut(s) 246
AluBI AGCT 1 cut(s) 297
AluI AGCT 1 cut(s) 297
ApeKI GCWGC 1 cut(s) 484
ApoI RAATTY 1 cut(s) 88
Asp700I GAANNNNTTC 1 cut(s) 38
AspS9I GGNCC 2 cut(s) 168, 533
AsuC2I CCSGG 1 cut(s) 69
AsuHPI GGTGA 3 cut(s) 376, 487, 529
AvaII GGWCC 2 cut(s) 168, 533
BbsI GAAGAC 1 cut(s) 298
BbvI GCAGC 1 cut(s) 496
BccI CCATC 1 cut(s) 249
BciT130I CCWGG 1 cut(s) 248
BcnI CCSGG 1 cut(s) 69
BfaI CTAG 2 cut(s) 126, 165
BfmI CTRYAG 1 cut(s) 482
BisI GCNGC 2 cut(s) 327, 485
BlsI GCNGC 2 cut(s) 328, 486
Bme1390I CCNGG 2 cut(s) 69, 248
Bme18I GGWCC 2 cut(s) 168, 533
BmgBI CACGTC 1 cut(s) 514
BmgT120I GGNCC 2 cut(s) 168, 533
BmiI GGNNCC 1 cut(s) 535
BmrFI CCNGG 2 cut(s) 69, 248
BmsI GCATC 1 cut(s) 378
BpiI GAAGAC 1 cut(s) 298
BpuMI CCSGG 1 cut(s) 69
Bsc4I CCNNNNNNNGG 1 cut(s) 236
Bse3DI GCAATG 1 cut(s) 152
BseBI CCWGG 1 cut(s) 248
BseGI GGATG 1 cut(s) 260
BseLI CCNNNNNNNGG 1 cut(s) 236
BseMI GCAATG 1 cut(s) 152
BseMII CTCAG 1 cut(s) 216
BseXI GCAGC 1 cut(s) 496
Bsh1236I CGCG 1 cut(s) 44
BsiSI CCGG 2 cut(s) 69, 382
BslFI GGGAC 1 cut(s) 124
BslI CCNNNNNNNGG 1 cut(s) 236
BsmFI GGGAC 1 cut(s) 124
Bsp143I GATC 1 cut(s) 399
Bsp68I TCGCGA 1 cut(s) 44
BspACI CCGC 1 cut(s) 326
BspCNI CTCAG 1 cut(s) 215
BspFNI CGCG 1 cut(s) 44
BspHI TCATGA 1 cut(s) 73
BspLI GGNNCC 1 cut(s) 535
BspMAI CTGCAG 1 cut(s) 486
BsrDI GCAATG 1 cut(s) 152
BssMI GATC 1 cut(s) 399
Bst2UI CCWGG 1 cut(s) 248
Bst4CI ACNGT 4 cut(s) 49, 115, 270, 281
BstC8I GCNNGC 1 cut(s) 220
BstDEI CTNAG 1 cut(s) 202
BstF5I GGATG 1 cut(s) 260
BstFNI CGCG 1 cut(s) 44
BstKTI GATC 1 cut(s) 402
BstMBI GATC 1 cut(s) 399
BstNI CCWGG 1 cut(s) 248
BstSCI CCNGG 2 cut(s) 67, 246
BstSFI CTRYAG 1 cut(s) 482
BstUI CGCG 1 cut(s) 44
BstV1I GCAGC 1 cut(s) 496
BstV2I GAAGAC 1 cut(s) 298
BtrI CACGTC 1 cut(s) 514
BtsCI GGATG 1 cut(s) 260
BtsI GCAGTG 2 cut(s) 448, 479
BtsIMutI CAGTG 4 cut(s) 120, 392, 448, 479
BtuMI TCGCGA 1 cut(s) 44
Cac8I GCNNGC 1 cut(s) 220
CciI TCATGA 1 cut(s) 73
Cfr13I GGNCC 2 cut(s) 168, 533
Csp6I GTAC 1 cut(s) 50
CviAII CATG 5 cut(s) 74, 452, 491, 501, 508
CviJI RGCY 4 cut(s) 14, 259, 297, 487
CviKI_1 RGCY 4 cut(s) 14, 259, 297, 487
CviQI GTAC 1 cut(s) 50
DdeI CTNAG 1 cut(s) 202
DpnI GATC 1 cut(s) 401
DpnII GATC 1 cut(s) 399
DraIII CACNNNGTG 1 cut(s) 236
Eco47I GGWCC 2 cut(s) 168, 533
EcoRI GAATTC 1 cut(s) 88
EcoRII CCWGG 1 cut(s) 246
FaeI CATG 5 cut(s) 77, 455, 494, 504, 511
FaqI GGGAC 1 cut(s) 124
FatI CATG 5 cut(s) 73, 451, 490, 500, 507
FblI GTMKAC 1 cut(s) 243
Fnu4HI GCNGC 2 cut(s) 327, 485
FokI GGATG 1 cut(s) 267
Fsp4HI GCNGC 2 cut(s) 327, 485
FspBI CTAG 2 cut(s) 126, 165
GluI GCNGC 2 cut(s) 327, 485
HapII CCGG 2 cut(s) 69, 382
Hin1II CATG 5 cut(s) 77, 455, 494, 504, 511
HinfI GANTC 2 cut(s) 64, 200
HpaII CCGG 2 cut(s) 69, 382
HphI GGTGA 3 cut(s) 376, 487, 529
Hpy166II GTNNAC 1 cut(s) 244
Hpy188I TCNGA 1 cut(s) 94
Hpy188III TCNNGA 2 cut(s) 43, 74
Hpy8I GTNNAC 1 cut(s) 244
HpyAV CCTTC 2 cut(s) 388, 514
HpyCH4III ACNGT 4 cut(s) 49, 115, 270, 281
HpyCH4IV ACGT 2 cut(s) 96, 513
HpyCH4V TGCA 3 cut(s) 157, 348, 484
HpyF3I CTNAG 1 cut(s) 202
HpySE526I ACGT 2 cut(s) 96, 513
Hsp92II CATG 5 cut(s) 77, 455, 494, 504, 511
Kzo9I GATC 1 cut(s) 399
LpnPI CCDG 5 cut(s) 82, 204, 233, 260, 395
Lsp1109I GCAGC 1 cut(s) 496
LweI GCATC 1 cut(s) 378
MaeI CTAG 2 cut(s) 126, 165
MaeII ACGT 2 cut(s) 96, 513
MaeIII GTNAC 3 cut(s) 205, 445, 475
MalI GATC 1 cut(s) 401
MboI GATC 1 cut(s) 399
MboII GAAGA 1 cut(s) 298
MluCI AATT 2 cut(s) 88, 528
MlyI GAGTC 1 cut(s) 194
MnlI CCTC 4 cut(s) 101, 142, 244, 498
MroXI GAANNNNTTC 1 cut(s) 38
MseI TTAA 3 cut(s) 83, 261, 300
MslI CAYNNNNRTG 2 cut(s) 341, 512
MspA1I CMGCKG 1 cut(s) 326
MspI CCGG 2 cut(s) 69, 382
MspR9I CCNGG 2 cut(s) 69, 248
MvaI CCWGG 1 cut(s) 248
MvnI CGCG 1 cut(s) 44
NciI CCSGG 1 cut(s) 69
NdeII GATC 1 cut(s) 399
NlaIII CATG 5 cut(s) 77, 455, 494, 504, 511
NlaIV GGNNCC 1 cut(s) 535
NmuCI GTSAC 2 cut(s) 445, 475
NruI TCGCGA 1 cut(s) 44
PagI TCATGA 1 cut(s) 73
PdmI GAANNNNTTC 1 cut(s) 38
PfeI GAWTC 1 cut(s) 64
PflMI CCANNNNNTGG 1 cut(s) 236
PkrI GCNGC 2 cut(s) 328, 486
PleI GAGTC 1 cut(s) 194
PpsI GAGTC 1 cut(s) 194
Psp6I CCWGG 1 cut(s) 246
PspGI CCWGG 1 cut(s) 246
PspN4I GGNNCC 1 cut(s) 535
PspPI GGNCC 2 cut(s) 168, 533
PstI CTGCAG 1 cut(s) 486
RruI TCGCGA 1 cut(s) 44
RsaI GTAC 1 cut(s) 51
RsaNI GTAC 1 cut(s) 50
RseI CAYNNNNRTG 2 cut(s) 341, 512
SaqAI TTAA 3 cut(s) 83, 261, 300
SatI GCNGC 2 cut(s) 327, 485
Sau3AI GATC 1 cut(s) 399
Sau96I GGNCC 2 cut(s) 168, 533
SchI GAGTC 1 cut(s) 194
ScrFI CCNGG 2 cut(s) 69, 248
SetI ASST 5 cut(s) 99, 235, 299, 306, 516
SfaNI GCATC 1 cut(s) 378
SfcI CTRYAG 1 cut(s) 482
SinI GGWCC 2 cut(s) 168, 533
SmiMI CAYNNNNRTG 2 cut(s) 341, 512
Sse9I AATT 2 cut(s) 88, 528
SsiI CCGC 1 cut(s) 326
SspMI CTAG 2 cut(s) 126, 165
StyD4I CCNGG 2 cut(s) 67, 246
TaaI ACNGT 4 cut(s) 49, 115, 270, 281
TaiI ACGT 2 cut(s) 99, 516
TaqI TCGA 2 cut(s) 16, 402
TasI AATT 2 cut(s) 88, 528
TatI WGTACW 1 cut(s) 49
TauI GCSGC 1 cut(s) 329
TfiI GAWTC 1 cut(s) 64
Tru1I TTAA 3 cut(s) 83, 261, 300
Tru9I TTAA 3 cut(s) 83, 261, 300
TscAI CASTG 4 cut(s) 120, 399, 448, 486
TseFI GTSAC 2 cut(s) 445, 475
TseI GCWGC 1 cut(s) 484
Tsp45I GTSAC 2 cut(s) 445, 475
TspDTI ATGAA 5 cut(s) 47, 77, 101, 325, 489
TspRI CASTG 4 cut(s) 120, 399, 448, 486
Van91I CCANNNNNTGG 1 cut(s) 236
VpaK11BI GGWCC 2 cut(s) 168, 533
XapI RAATTY 1 cut(s) 88
XmiI GTMKAC 1 cut(s) 243
XmnI GAANNNNTTC 1 cut(s) 38
XspI CTAG 2 cut(s) 126, 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.