Rmu_sc0030536.1_g000003

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0030536.1
OG0001058
Physical Location & Seq
Reverse (-)
7637 .. 10538
2902 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0030536.1_g000003.1.cds

Sequence Viewer

Length: 1104 bp
ctgttctctttaaccccaaaggttgatgagatagattctgggactacaacaacattagaaagtcctagagctgcacaggaggaagaatttgaaaggctttctgaaggtaacacgcatccaggaagtgatcgatctgattgtgaaattgacatggggcgtatggctcgaaacaatcaacaaatgaaacacttcgctacagtacaagcaaagatgaatcccggtcatgatgttttaatgaattctgacgttctttttagagggacaatggataaaactaggcaatatgagatatatagagaggcattgcaaaatactaggaacactatcacaatagttgctgttttgactgactcagttacttttactgctggcataaacccacctggtggtgtctaccaggagggatggtttaaaggacagtcaatatacagttggcagaacaacagctttaaggtcttcacaataagcaacacagcggcattgttcatatctatgtgcattgtcattgtgttggtgagcatcattcccttccggcgaaaatcactgatgacactatttgtggttgctcacaaagtcttgttggtggcagtgtcactcatgttgctcacaaacgttgctgtgcaaggatcacacagcggcattgttgaagatgacagagttgcaagaggcggcgcgatggtgctcatggatgctggcggctccttttcctttggacgccttggacctaatctgctgacagagttcctaatgcctgatgtaggtggtggctttttgacgctaggctttactttcctagcgttagggtttggaccaatgtggtttcggcgaagaaatcaagatgaagaagaagaagaagaacgactctgttcctccccctctcattgtgaaaccccgattatgccccaaagcaattctcgaatggtccaacaccaccggcaagatcggccgctccgatttgaccgaaaaggccagagctcacctctccgcattgggctggaaattttggtacaaaaacaagtccaacaacaggatggagttgcgctacgaatctcccaccggaaaagtcttctactctctccgagcggcctgcaaggcctgcgttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 Ank_4 Ank_5 PGG

Protein Analysis

367

Amino Acids

40.95

Weight (kDa)

7.28

Isoelectric Point (pI)

47.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 386
AccBSI CCGCTC 2 cut(s) 949, 1083
AccI GTMKAC 1 cut(s) 393
AccII CGCG 1 cut(s) 674
AciI CCGC 7 cut(s) 476, 636, 669, 696, 947, 985, 1083
AclI AACGTT 1 cut(s) 612
AclWI GGATC 1 cut(s) 634
AcoI YGGCCR 1 cut(s) 944
AcsI RAATTY 3 cut(s) 86, 238, 999
AcuI CTGAAG 1 cut(s) 123
AcyI GRCGYC 1 cut(s) 715
AdeI CACNNNGTG 1 cut(s) 386
AfaI GTAC 2 cut(s) 201, 1008
AfiI CCNNNNNNNGG 3 cut(s) 386, 758, 1027
AgsI TTSAA 2 cut(s) 92, 647
AjnI CCWGG 3 cut(s) 118, 382, 396
AluBI AGCT 3 cut(s) 71, 447, 975
AluI AGCT 3 cut(s) 71, 447, 975
Alw21I GWGCWC 2 cut(s) 684, 977
AlwI GGATC 1 cut(s) 634
AoxI GGCC 4 cut(s) 944, 967, 1084, 1093
ApeKI GCWGC 1 cut(s) 71
ApoI RAATTY 3 cut(s) 86, 238, 999
Asp700I GAANNNNTTC 1 cut(s) 188
AspLEI GCGC 2 cut(s) 674, 1042
AspS9I GGNCC 3 cut(s) 722, 809, 922
AsuC2I CCSGG 1 cut(s) 219
AsuHPI GGTGA 2 cut(s) 526, 969
AvaII GGWCC 3 cut(s) 722, 809, 922
BanII GRGCYC 1 cut(s) 977
BbsI GAAGAC 2 cut(s) 448, 1058
Bbv12I GWGCWC 2 cut(s) 684, 977
BbvI GCAGC 1 cut(s) 58
BccI CCATC 3 cut(s) 399, 670, 1025
BcgI CGANNNNNNTGC 2 cut(s) 1069, 1103
BciT130I CCWGG 3 cut(s) 120, 384, 398
BcnI CCSGG 1 cut(s) 219
BfaI CTAG 5 cut(s) 66, 276, 315, 779, 794
BfmI CTRYAG 1 cut(s) 195
BglI GCCNNNNNGGC 1 cut(s) 1092
BisI GCNGC 7 cut(s) 72, 477, 637, 670, 697, 947, 1084
BlsI GCNGC 7 cut(s) 73, 478, 638, 671, 698, 948, 1085
Bme1390I CCNGG 4 cut(s) 120, 219, 384, 398
Bme18I GGWCC 3 cut(s) 722, 809, 922
BmgT120I GGNCC 3 cut(s) 722, 809, 922
BmiI GGNNCC 1 cut(s) 700
BmrFI CCNGG 4 cut(s) 120, 219, 384, 398
BmsI GCATC 3 cut(s) 124, 528, 679
BpiI GAAGAC 2 cut(s) 448, 1058
BplI GAGNNNNNCTC 2 cut(s) 964, 996
BpuMI CCSGG 1 cut(s) 219
Bsa29I ATCGAT 1 cut(s) 130
BsaHI GRCGYC 1 cut(s) 715
BsaJI CCNNGG 1 cut(s) 718
BsaWI WCCGGW 1 cut(s) 1056
BsaXI ACNNNNNCTCC 2 cut(s) 392, 422
Bsc4I CCNNNNNNNGG 3 cut(s) 386, 758, 1027
Bse118I RCCGGY 1 cut(s) 933
Bse3DI GCAATG 1 cut(s) 302
BseBI CCWGG 3 cut(s) 120, 384, 398
BseCI ATCGAT 1 cut(s) 130
BseDI CCNNGG 1 cut(s) 718
BseGI GGATG 4 cut(s) 115, 410, 694, 1036
BseLI CCNNNNNNNGG 3 cut(s) 386, 758, 1027
BseMI GCAATG 1 cut(s) 302
BseMII CTCAG 1 cut(s) 366
BseX3I CGGCCG 1 cut(s) 944
BseXI GCAGC 1 cut(s) 58
BsgI GTGCAG 1 cut(s) 57
Bsh1236I CGCG 1 cut(s) 674
Bsh1285I CGRYCG 1 cut(s) 947
BshFI GGCC 4 cut(s) 946, 969, 1086, 1095
BshVI ATCGAT 1 cut(s) 130
BsiEI CGRYCG 1 cut(s) 947
BsiHKAI GWGCWC 2 cut(s) 684, 977
BsiSI CCGG 4 cut(s) 219, 532, 934, 1057
BslFI GGGAC 2 cut(s) 55, 274
BslI CCNNNNNNNGG 3 cut(s) 386, 758, 1027
BsmFI GGGAC 2 cut(s) 55, 274
BsnI GGCC 4 cut(s) 946, 969, 1086, 1095
Bsp1286I GDGCHC 2 cut(s) 684, 977
Bsp143I GATC 4 cut(s) 127, 131, 626, 940
BspACI CCGC 7 cut(s) 476, 636, 669, 696, 947, 985, 1083
BspANI GGCC 4 cut(s) 946, 969, 1086, 1095
BspCNI CTCAG 1 cut(s) 365
BspDI ATCGAT 1 cut(s) 130
BspFNI CGCG 1 cut(s) 674
BspHI TCATGA 1 cut(s) 223
BspLI GGNNCC 1 cut(s) 700
BspPI GGATC 1 cut(s) 634
BsrBI CCGCTC 2 cut(s) 949, 1083
BsrDI GCAATG 1 cut(s) 302
BsrFI RCCGGY 1 cut(s) 933
BssAI RCCGGY 1 cut(s) 933
BssECI CCNNGG 1 cut(s) 718
BssMI GATC 4 cut(s) 127, 131, 626, 940
BssNI GRCGYC 1 cut(s) 715
BssT1I CCWWGG 1 cut(s) 718
Bst2UI CCWGG 3 cut(s) 120, 384, 398
Bst4CI ACNGT 3 cut(s) 199, 420, 431
BstACI GRCGYC 1 cut(s) 715
BstAPI GCANNNNNTGC 1 cut(s) 1096
BstC8I GCNNGC 4 cut(s) 370, 694, 1088, 1097
BstDEI CTNAG 1 cut(s) 352
BstENI CCTNNNNNAGG 1 cut(s) 756
BstF5I GGATG 4 cut(s) 115, 410, 694, 1036
BstFNI CGCG 1 cut(s) 674
BstHHI GCGC 2 cut(s) 674, 1042
BstKTI GATC 4 cut(s) 130, 134, 629, 943
BstMBI GATC 4 cut(s) 127, 131, 626, 940
BstMCI CGRYCG 1 cut(s) 947
BstMWI GCNNNNNNNGC 3 cut(s) 943, 1092, 1096
BstNI CCWGG 3 cut(s) 120, 384, 398
BstSCI CCNGG 4 cut(s) 118, 217, 382, 396
BstSFI CTRYAG 1 cut(s) 195
BstUI CGCG 1 cut(s) 674
BstV1I GCAGC 1 cut(s) 58
BstV2I GAAGAC 2 cut(s) 448, 1058
BstZI CGGCCG 1 cut(s) 944
Bsu15I ATCGAT 1 cut(s) 130
BsuRI GGCC 4 cut(s) 946, 969, 1086, 1095
BsuTUI ATCGAT 1 cut(s) 130
BtgZI GCGATG 1 cut(s) 689
BtsCI GGATG 4 cut(s) 115, 410, 694, 1036
BtsI GCAGTG 1 cut(s) 594
BtsIMutI CAGTG 2 cut(s) 542, 594
Cac8I GCNNGC 4 cut(s) 370, 694, 1088, 1097
CciI TCATGA 1 cut(s) 223
CfoI GCGC 2 cut(s) 674, 1042
Cfr10I RCCGGY 1 cut(s) 933
Cfr13I GGNCC 3 cut(s) 722, 809, 922
ClaI ATCGAT 1 cut(s) 130
CseI GACGC 2 cut(s) 723, 784
CsiI ACCWGGT 1 cut(s) 382
Csp6I GTAC 2 cut(s) 200, 1007
CviAII CATG 4 cut(s) 151, 224, 598, 685
CviQI GTAC 2 cut(s) 200, 1007
DdeI CTNAG 1 cut(s) 352
DpnI GATC 4 cut(s) 129, 133, 628, 942
DpnII GATC 4 cut(s) 127, 131, 626, 940
DraI TTTAAA 1 cut(s) 412
DraIII CACNNNGTG 1 cut(s) 386
EaeI YGGCCR 1 cut(s) 944
EagI CGGCCG 1 cut(s) 944
Ecl136II GAGCTC 1 cut(s) 975
EclXI CGGCCG 1 cut(s) 944
Eco130I CCWWGG 1 cut(s) 718
Eco147I AGGCCT 1 cut(s) 1095
Eco24I GRGCYC 1 cut(s) 977
Eco47I GGWCC 3 cut(s) 722, 809, 922
Eco52I CGGCCG 1 cut(s) 944
Eco53kI GAGCTC 1 cut(s) 975
Eco57I CTGAAG 1 cut(s) 123
EcoICRI GAGCTC 1 cut(s) 975
EcoNI CCTNNNNNAGG 1 cut(s) 756
EcoRI GAATTC 1 cut(s) 238
EcoRII CCWGG 3 cut(s) 118, 382, 396
EcoT14I CCWWGG 1 cut(s) 718
EcoT38I GRGCYC 1 cut(s) 977
ErhI CCWWGG 1 cut(s) 718
FaeI CATG 4 cut(s) 154, 227, 601, 688
FaqI GGGAC 2 cut(s) 55, 274
FatI CATG 4 cut(s) 150, 223, 597, 684
FblI GTMKAC 1 cut(s) 393
Fnu4HI GCNGC 7 cut(s) 72, 477, 637, 670, 697, 947, 1084
FokI GGATG 4 cut(s) 102, 417, 701, 1043
FriOI GRGCYC 1 cut(s) 977
Fsp4HI GCNGC 7 cut(s) 72, 477, 637, 670, 697, 947, 1084
FspBI CTAG 5 cut(s) 66, 276, 315, 779, 794
GlaI GCGC 2 cut(s) 673, 1041
GluI GCNGC 7 cut(s) 72, 477, 637, 670, 697, 947, 1084
HaeIII GGCC 4 cut(s) 946, 969, 1086, 1095
HapII CCGG 4 cut(s) 219, 532, 934, 1057
HgaI GACGC 2 cut(s) 723, 784
HhaI GCGC 2 cut(s) 674, 1042
Hin1I GRCGYC 1 cut(s) 715
Hin1II CATG 4 cut(s) 154, 227, 601, 688
Hin6I GCGC 2 cut(s) 672, 1040
HinP1I GCGC 2 cut(s) 672, 1040
HinfI GANTC 5 cut(s) 35, 214, 350, 861, 1047
HpaII CCGG 4 cut(s) 219, 532, 934, 1057
HphI GGTGA 2 cut(s) 526, 969
Hpy166II GTNNAC 1 cut(s) 394
Hpy188I TCNGA 5 cut(s) 103, 136, 244, 953, 1080
Hpy188III TCNNGA 3 cut(s) 224, 836, 915
Hpy8I GTNNAC 1 cut(s) 394
HpyAV CCTTC 2 cut(s) 98, 538
HpyCH4III ACNGT 3 cut(s) 199, 420, 431
HpyCH4IV ACGT 2 cut(s) 246, 612
HpyCH4V TGCA 6 cut(s) 74, 307, 498, 622, 662, 1090
HpyF10VI GCNNNNNNNGC 3 cut(s) 943, 1092, 1096
HpyF3I CTNAG 1 cut(s) 352
HpySE526I ACGT 2 cut(s) 246, 612
Hsp92I GRCGYC 1 cut(s) 715
Hsp92II CATG 4 cut(s) 154, 227, 601, 688
HspAI GCGC 2 cut(s) 672, 1040
Kzo9I GATC 4 cut(s) 127, 131, 626, 940
LmnI GCTCC 2 cut(s) 704, 954
Lsp1109I GCAGC 1 cut(s) 58
LweI GCATC 3 cut(s) 124, 528, 679
MabI ACCWGGT 1 cut(s) 382
MaeI CTAG 5 cut(s) 66, 276, 315, 779, 794
MaeII ACGT 2 cut(s) 246, 612
MaeIII GTNAC 3 cut(s) 107, 355, 591
MalI GATC 4 cut(s) 129, 133, 628, 942
MbiI CCGCTC 2 cut(s) 949, 1083
MboI GATC 4 cut(s) 127, 131, 626, 940
MhlI GDGCHC 2 cut(s) 684, 977
MluCI AATT 5 cut(s) 86, 144, 238, 910, 999
MlyI GAGTC 2 cut(s) 344, 855
MmeI TCCRAC 2 cut(s) 949, 1045
MnlI CCTC 8 cut(s) 73, 251, 292, 394, 659, 880, 886, 990
MroXI GAANNNNTTC 1 cut(s) 188
MseI TTAA 4 cut(s) 11, 233, 411, 450
MslI CAYNNNNRTG 1 cut(s) 491
MspA1I CMGCKG 2 cut(s) 476, 636
MspI CCGG 4 cut(s) 219, 532, 934, 1057
MspR9I CCNGG 4 cut(s) 120, 219, 384, 398
MvaI CCWGG 3 cut(s) 120, 384, 398
MvnI CGCG 1 cut(s) 674
MwoI GCNNNNNNNGC 3 cut(s) 943, 1092, 1096
NciI CCSGG 1 cut(s) 219
NdeII GATC 4 cut(s) 127, 131, 626, 940
NlaIII CATG 4 cut(s) 154, 227, 601, 688
NlaIV GGNNCC 1 cut(s) 700
NmuCI GTSAC 1 cut(s) 591
PagI TCATGA 1 cut(s) 223
PceI AGGCCT 1 cut(s) 1095
PcsI WCGNNNNNNNCGW 1 cut(s) 949
PdmI GAANNNNTTC 1 cut(s) 188
PfeI GAWTC 3 cut(s) 35, 214, 1047
PflMI CCANNNNNTGG 1 cut(s) 386
PfoI TCCNGGA 1 cut(s) 118
PkrI GCNGC 7 cut(s) 73, 478, 638, 671, 698, 948, 1085
PleI GAGTC 2 cut(s) 344, 855
PpsI GAGTC 2 cut(s) 344, 855
Psp124BI GAGCTC 1 cut(s) 977
Psp1406I AACGTT 1 cut(s) 612
Psp6I CCWGG 3 cut(s) 118, 382, 396
PspGI CCWGG 3 cut(s) 118, 382, 396
PspN4I GGNNCC 1 cut(s) 700
PspPI GGNCC 3 cut(s) 722, 809, 922
RsaI GTAC 2 cut(s) 201, 1008
RsaNI GTAC 2 cut(s) 200, 1007
RseI CAYNNNNRTG 1 cut(s) 491
SacI GAGCTC 1 cut(s) 977
SaqAI TTAA 4 cut(s) 11, 233, 411, 450
SatI GCNGC 7 cut(s) 72, 477, 637, 670, 697, 947, 1084
Sau3AI GATC 4 cut(s) 127, 131, 626, 940
Sau96I GGNCC 3 cut(s) 722, 809, 922
SchI GAGTC 2 cut(s) 344, 855
ScrFI CCNGG 4 cut(s) 120, 219, 384, 398
SduI GDGCHC 2 cut(s) 684, 977
SexAI ACCWGGT 1 cut(s) 382
SfaNI GCATC 3 cut(s) 124, 528, 679
SfcI CTRYAG 1 cut(s) 195
SfiI GGCCNNNNNGGCC 1 cut(s) 1092
SinI GGWCC 3 cut(s) 722, 809, 922
SmiMI CAYNNNNRTG 1 cut(s) 491
Sse9I AATT 5 cut(s) 86, 144, 238, 910, 999
SseBI AGGCCT 1 cut(s) 1095
SsiI CCGC 7 cut(s) 476, 636, 669, 696, 947, 985, 1083
SspMI CTAG 5 cut(s) 66, 276, 315, 779, 794
SstI GAGCTC 1 cut(s) 977
StuI AGGCCT 1 cut(s) 1095
StyD4I CCNGG 4 cut(s) 118, 217, 382, 396
StyI CCWWGG 1 cut(s) 718
TaaI ACNGT 3 cut(s) 199, 420, 431
TaiI ACGT 2 cut(s) 249, 615
TaqI TCGA 3 cut(s) 130, 166, 916
TaqII GACCGA 1 cut(s) 975
TasI AATT 5 cut(s) 86, 144, 238, 910, 999
TatI WGTACW 1 cut(s) 199
TauI GCSGC 6 cut(s) 479, 639, 672, 699, 949, 1086
TfiI GAWTC 3 cut(s) 35, 214, 1047
Tru1I TTAA 4 cut(s) 11, 233, 411, 450
Tru9I TTAA 4 cut(s) 11, 233, 411, 450
TscAI CASTG 2 cut(s) 549, 594
TseFI GTSAC 1 cut(s) 591
TseI GCWGC 1 cut(s) 71
Tsp45I GTSAC 1 cut(s) 591
TspDTI ATGAA 5 cut(s) 197, 227, 251, 475, 855
TspRI CASTG 2 cut(s) 549, 594
Van91I CCANNNNNTGG 1 cut(s) 386
VpaK11BI GGWCC 3 cut(s) 722, 809, 922
XagI CCTNNNNNAGG 1 cut(s) 756
XapI RAATTY 3 cut(s) 86, 238, 999
XcmI CCANNNNNNNNNTGG 1 cut(s) 1028
XmiI GTMKAC 1 cut(s) 393
XmnI GAANNNNTTC 1 cut(s) 188
XspI CTAG 5 cut(s) 66, 276, 315, 779, 794
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.