Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8276735.1

Orthogroup ID

OG0001058

Physical Location & Seq

Genomic Coordinates Forward (+)

61 .. 718

Gene Structure 658 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8276735.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

atgttgctcgatttatgtagtaattccaaagtgtttactttgcaattgaaagggtgcgccaggtttgcttggaaggttgacagcaatgggtgtctaccgctgcatatagcttgcgaaaaaggtcacttagagatagcaagaacactgttgatgattgatccagaccttgctcttgaatttgaccattatcattacacaccagtacacttggctgcaatggctgacaagcatggtaacacaatcttacatcttgctgtctctgcagggaacattacattgtcggagcacataatcaggaatactacagttgatgtcaattgtagaaatcaaagaggtcaaatagcaatggacatcttatgccagcaaagaagagcgtcggatgtcagaaacatgttgaagagttttggtggcaggaagagcactgagctgttgtctttaacaccaaagattgatgagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_4 Ank_5 PGG

Protein Analysis

152

Amino Acids

16.99

Weight (kDa)

7.69

Isoelectric Point (pI)

37.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001058)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50140 AT5G54710 AT5G54710
fragaria_vesca	FvH4_6g32122 FvH4_6g32123
prunus_persica	Prupe.3G061800_v2.0.a1 Prupe.3G061800_v2.0.a1 Prupe.3G062200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0139931 RchiOBHm_Chr2g0139941 RchiOBHm_Chr2g0139951 RchiOBHm_Chr2g0139971 RchiOBHm_Chr2g0139981 RchiOBHm_Chr2g0139991 RchiOBHm_Chr2g0140001 RchiOBHm_Chr2g0140011 RchiOBHm_Chr2g0140021 RchiOBHm_Chr6g0309561
rosa_laevigata	RLG00000010553 RLG00000019839 RLG00000019840 RLG00000019841 RLG00000019842
rosa_multiflora	Rmu_co8276735.1_g000001 Rmu_co8522085.1_g000001 Rmu_sc0000545.1_g000024 Rmu_sc0000545.1_g000026 Rmu_sc0000545.1_g000027 Rmu_sc0003101.1_g000002 Rmu_sc0007283.1_g000013 Rmu_sc0030536.1_g000003
rosa_roxburghii	Rroxscaffold_2G00105140 Rroxscaffold_2G00105150
rosa_rugosa	Rorug02G0360300 Rorug02G0360400 Rorug02G0360500
rosa_samantha	Rh2AG410600 Rh2AG410900 Rh2AG411000 Rh2AG411100 Rh2BG420800 Rh2BG420900 Rh2BG421000 Rh2BG421100 Rh2BG421200 Rh2BG421300 Rh2CG396700 Rh2CG396900 Rh2CG397100 Rh2CG397200 Rh2DG430300 Rh2DG430500 Rh2DG430800 Rh6AG486300 Rh6BG495700
rosa_wichuraiana	Rw2G033340 Rw2G033550 Rw2G033650 Rw2G033660 Rw2G033670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	94
AciI	CCGC	1 cut(s)	98
AclWI	GGATC	1 cut(s)	152
AcsI	RAATTY	1 cut(s)	176
AfaI	GTAC	1 cut(s)	204
AflIII	ACRYGT	1 cut(s)	390
AgsI	TTSAA	3 cut(s)	49, 176, 397
AjnI	CCWGG	1 cut(s)	59
AluBI	AGCT	2 cut(s)	110, 427
AluI	AGCT	2 cut(s)	110, 427
Alw21I	GWGCWC	2 cut(s)	288, 422
Alw26I	GTCTC	1 cut(s)	262
AlwI	GGATC	1 cut(s)	152
ApeKI	GCWGC	2 cut(s)	100, 212
ApoI	RAATTY	1 cut(s)	176
AspLEI	GCGC	1 cut(s)	59
Bbv12I	GWGCWC	2 cut(s)	288, 422
BbvI	GCAGC	2 cut(s)	87, 199
BciT130I	CCWGG	1 cut(s)	61
BcoDI	GTCTC	1 cut(s)	262
BfmI	CTRYAG	2 cut(s)	261, 303
BisI	GCNGC	2 cut(s)	101, 213
BlsI	GCNGC	2 cut(s)	102, 214
Bme1390I	CCNGG	1 cut(s)	61
BmrFI	CCNGG	1 cut(s)	61
Bse1I	ACTGG	1 cut(s)	200
Bse3DI	GCAATG	3 cut(s)	91, 222, 351
BseBI	CCWGG	1 cut(s)	61
BseGI	GGATG	1 cut(s)	385
BseMI	GCAATG	3 cut(s)	91, 222, 351
BseMII	CTCAG	1 cut(s)	414
BseNI	ACTGG	1 cut(s)	200
BseXI	GCAGC	2 cut(s)	87, 199
BsiHKAI	GWGCWC	2 cut(s)	288, 422
BsmAI	GTCTC	1 cut(s)	262
Bsp1286I	GDGCHC	2 cut(s)	288, 422
Bsp143I	GATC	1 cut(s)	157
BspACI	CCGC	1 cut(s)	98
BspCNI	CTCAG	1 cut(s)	415
BspMAI	CTGCAG	1 cut(s)	265
BspPI	GGATC	1 cut(s)	152
BspQI	GCTCTTC	2 cut(s)	364, 410
BsrDI	GCAATG	3 cut(s)	91, 222, 351
BsrI	ACTGG	1 cut(s)	200
BssMI	GATC	1 cut(s)	157
Bst2UI	CCWGG	1 cut(s)	61
Bst4CI	ACNGT	2 cut(s)	147, 307
Bst6I	CTCTTC	3 cut(s)	364, 392, 410
BstC8I	GCNNGC	2 cut(s)	112, 362
BstDEI	CTNAG	2 cut(s)	127, 423
BstF5I	GGATG	1 cut(s)	385
BstHHI	GCGC	1 cut(s)	59
BstKTI	GATC	1 cut(s)	160
BstMAI	GTCTC	1 cut(s)	262
BstMBI	GATC	1 cut(s)	157
BstMWI	GCNNNNNNNGC	4 cut(s)	65, 218, 260, 417
BstNI	CCWGG	1 cut(s)	61
BstNSI	RCATGY	1 cut(s)	394
BstSCI	CCNGG	1 cut(s)	59
BstSFI	CTRYAG	2 cut(s)	261, 303
BstV1I	GCAGC	2 cut(s)	87, 199
BtsCI	GGATG	1 cut(s)	385
BtsIMutI	CAGTG	2 cut(s)	143, 420
Cac8I	GCNNGC	2 cut(s)	112, 362
CfoI	GCGC	1 cut(s)	59
CseI	GACGC	1 cut(s)	363
Csp6I	GTAC	1 cut(s)	203
CviAII	CATG	2 cut(s)	230, 391
CviJI	RGCY	4 cut(s)	110, 212, 221, 427
CviKI_1	RGCY	4 cut(s)	110, 212, 221, 427
CviQI	GTAC	1 cut(s)	203
DdeI	CTNAG	2 cut(s)	127, 423
DpnI	GATC	1 cut(s)	159
DpnII	GATC	1 cut(s)	157
Eam1104I	CTCTTC	3 cut(s)	364, 392, 410
EarI	CTCTTC	3 cut(s)	364, 392, 410
EcoRII	CCWGG	1 cut(s)	59
FaeI	CATG	2 cut(s)	233, 394
FaiI	YATR	7 cut(s)	16, 105, 107, 231, 290, 358, 392
FatI	CATG	2 cut(s)	229, 390
FblI	GTMKAC	1 cut(s)	94
Fnu4HI	GCNGC	2 cut(s)	101, 213
FokI	GGATG	1 cut(s)	392
Fsp4HI	GCNGC	2 cut(s)	101, 213
GlaI	GCGC	1 cut(s)	58
GluI	GCNGC	2 cut(s)	101, 213
HgaI	GACGC	1 cut(s)	363
HhaI	GCGC	1 cut(s)	59
Hin1II	CATG	2 cut(s)	233, 394
Hin6I	GCGC	1 cut(s)	57
HinP1I	GCGC	1 cut(s)	57
HincII	GTYRAC	1 cut(s)	79
HindII	GTYRAC	1 cut(s)	79
Hpy166II	GTNNAC	4 cut(s)	36, 79, 95, 205
Hpy188I	TCNGA	3 cut(s)	283, 379, 386
Hpy188III	TCNNGA	3 cut(s)	161, 173, 295
Hpy8I	GTNNAC	4 cut(s)	36, 79, 95, 205
Hpy99I	CGWCG	1 cut(s)	379
HpyAV	CCTTC	1 cut(s)	67
HpyCH4III	ACNGT	2 cut(s)	147, 307
HpyCH4V	TGCA	4 cut(s)	43, 103, 215, 263
HpyF10VI	GCNNNNNNNGC	4 cut(s)	65, 218, 260, 417
HpyF3I	CTNAG	2 cut(s)	127, 423
Hsp92II	CATG	2 cut(s)	233, 394
HspAI	GCGC	1 cut(s)	57
Kzo9I	GATC	1 cut(s)	157
LguI	GCTCTTC	2 cut(s)	364, 410
LmnI	GCTCC	1 cut(s)	283
LpnPI	CCDG	8 cut(s)	46, 73, 174, 213, 249, 280, 374, 397
Lsp1109I	GCAGC	2 cut(s)	87, 199
MaeIII	GTNAC	2 cut(s)	122, 233
MalI	GATC	1 cut(s)	159
MboI	GATC	1 cut(s)	157
MboII	GAAGA	3 cut(s)	381, 409, 427
MfeI	CAATTG	2 cut(s)	44, 316
MhlI	GDGCHC	2 cut(s)	288, 422
MluCI	AATT	4 cut(s)	22, 44, 176, 316
MmeI	TCCRAC	2 cut(s)	261, 357
MnlI	CCTC	1 cut(s)	326
MseI	TTAA	1 cut(s)	437
MspA1I	CMGCKG	1 cut(s)	100
MspR9I	CCNGG	1 cut(s)	61
MunI	CAATTG	2 cut(s)	44, 316
MvaI	CCWGG	1 cut(s)	61
MwoI	GCNNNNNNNGC	4 cut(s)	65, 218, 260, 417
NdeII	GATC	1 cut(s)	157
NlaIII	CATG	2 cut(s)	233, 394
NmuCI	GTSAC	1 cut(s)	122
NspI	RCATGY	1 cut(s)	394
PciI	ACATGT	1 cut(s)	390
PciSI	GCTCTTC	2 cut(s)	364, 410
PkrI	GCNGC	2 cut(s)	102, 214
PscI	ACATGT	1 cut(s)	390
Psp6I	CCWGG	1 cut(s)	59
PspGI	CCWGG	1 cut(s)	59
PstI	CTGCAG	1 cut(s)	265
RsaI	GTAC	1 cut(s)	204
RsaNI	GTAC	1 cut(s)	203
SapI	GCTCTTC	2 cut(s)	364, 410
SaqAI	TTAA	1 cut(s)	437
SatI	GCNGC	2 cut(s)	101, 213
Sau3AI	GATC	1 cut(s)	157
ScrFI	CCNGG	1 cut(s)	61
SduI	GDGCHC	2 cut(s)	288, 422
SetI	ASST	7 cut(s)	65, 78, 112, 124, 168, 337, 429
SfcI	CTRYAG	2 cut(s)	261, 303
Sse9I	AATT	4 cut(s)	22, 44, 176, 316
SsiI	CCGC	1 cut(s)	98
StyD4I	CCNGG	1 cut(s)	59
TaaI	ACNGT	2 cut(s)	147, 307
TaqI	TCGA	1 cut(s)	9
TasI	AATT	4 cut(s)	22, 44, 176, 316
TatI	WGTACW	1 cut(s)	202
Tru1I	TTAA	1 cut(s)	437
Tru9I	TTAA	1 cut(s)	437
TscAI	CASTG	2 cut(s)	150, 427
TseFI	GTSAC	1 cut(s)	122
TseI	GCWGC	2 cut(s)	100, 212
Tsp45I	GTSAC	1 cut(s)	122
TspRI	CASTG	2 cut(s)	150, 427
XapI	RAATTY	1 cut(s)	176
XceI	RCATGY	1 cut(s)	394
XmiI	GTMKAC	1 cut(s)	94

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.