RLG00000010553

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0001058
Physical Location & Seq
Reverse (-)
2581775 .. 2582635
861 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010553

Sequence Viewer

Length: 861 bp
ATGTCAAATTTTCATTTATCAGAGTACGTCATCAGCAATACTAAAGTAGATGTCAATTGTAGGAACCAAAGAGGTCAAACAGCATTGGACATCCTAGACGAGCAAAGAATATCTTCTAATCTTAGATATACGTTGAAGAGTTTTGGTGGCAGAACAAGTACTGAGCTATTCTCTTTAACCCCAAAGGTTGATGAGATAGATTCTGGGACTACAACAACATTAGAAAGTCCTAGAGCTGCACTGGAGCAAGAATTTGAAAGGCTTTTTGAATGTAACACGCATCCAGGAAGTGATCAATCTGATTGTGAAATTGACATGGGGCGTATGGCTCGAAACAATCAACAAAGGAAACACTTCGCTACAGTACAAGCAGAGATGAATCCCAGTCATGATGTTTTAATGAATTCTGACGTTCTTTTTAGAGGGACAGTGGATAAAACTAGGCAATATGAGATATATAGAGAGGCATTGCAAAATACTAGAAACACTATCACAATAGTTGCTGTTTTGACTGACTCAGTTACTTTTACTGCTGGCATAAACCCACCTGGTGGTGTCTACGAGGAGGGATGGCTTAAAGGACAGTCAATATACAGTTGGCAGAACAACAGCTTTAAGGTCTTTACAATAAGCAACACAGTGGCATTGTTCATATCTATGTGCATTGTCATTGTGTTGGTGAGCATCATTCCCTTCCGGCGAAAATCACTGATGACACTACTTGTGGTTGCTCACAAAGTGTTTATTGGTGGCAGTGTCACTCATGTTGCTCACAAAGTCTTGTTGGTGATATTGCAGCCTCATGGATATTCATGCCACATGGACGTGGTGAAGGAGAAAATTGGACCCTTGAAGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 Ank_4 Ank_5 PGG

Protein Analysis

287

Amino Acids

32.21

Weight (kDa)

7.12

Isoelectric Point (pI)

29.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGG PF13962 155 - 249 4.5e-23 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 551
AccI GTMKAC 1 cut(s) 558
AcsI RAATTY 3 cut(s) 7, 251, 403
AdeI CACNNNGTG 2 cut(s) 551, 739
AfaI GTAC 3 cut(s) 26, 160, 366
AfiI CCNNNNNNNGG 1 cut(s) 551
AgsI TTSAA 4 cut(s) 136, 257, 269, 853
AjiI CACGTC 1 cut(s) 826
AjnI CCWGG 2 cut(s) 283, 547
AluBI AGCT 3 cut(s) 166, 236, 612
AluI AGCT 3 cut(s) 166, 236, 612
ApeKI GCWGC 2 cut(s) 236, 796
ApoI RAATTY 3 cut(s) 7, 251, 403
Asp700I GAANNNNTTC 2 cut(s) 112, 353
AspS9I GGNCC 1 cut(s) 845
AsuHPI GGTGA 3 cut(s) 691, 799, 841
AvaII GGWCC 1 cut(s) 845
BbvI GCAGC 2 cut(s) 223, 808
BccI CCATC 1 cut(s) 564
BciT130I CCWGG 2 cut(s) 285, 549
BclI TGATCA 1 cut(s) 292
BfaI CTAG 4 cut(s) 95, 231, 441, 480
BfmI CTRYAG 1 cut(s) 360
BisI GCNGC 2 cut(s) 237, 797
BlsI GCNGC 2 cut(s) 238, 798
BmcAI AGTACT 1 cut(s) 160
Bme1390I CCNGG 2 cut(s) 285, 549
Bme18I GGWCC 1 cut(s) 845
BmgBI CACGTC 1 cut(s) 826
BmgT120I GGNCC 1 cut(s) 845
BmiI GGNNCC 2 cut(s) 65, 847
BmrFI CCNGG 2 cut(s) 285, 549
BmrI ACTGGG 1 cut(s) 378
BmsI GCATC 2 cut(s) 289, 693
BmuI ACTGGG 1 cut(s) 378
BplI GAGNNNNNCTC 2 cut(s) 155, 187
BpmI CTGGAG 1 cut(s) 263
Bsc4I CCNNNNNNNGG 1 cut(s) 551
Bse1I ACTGG 2 cut(s) 246, 384
Bse3DI GCAATG 1 cut(s) 467
BseBI CCWGG 2 cut(s) 285, 549
BseGI GGATG 3 cut(s) 90, 280, 575
BseLI CCNNNNNNNGG 1 cut(s) 551
BseMI GCAATG 1 cut(s) 467
BseMII CTCAG 2 cut(s) 153, 531
BseNI ACTGG 2 cut(s) 246, 384
BseRI GAGGAG 1 cut(s) 578
BseXI GCAGC 2 cut(s) 223, 808
BsgI GTGCAG 1 cut(s) 222
BsiSI CCGG 1 cut(s) 697
BslFI GGGAC 2 cut(s) 220, 439
BslI CCNNNNNNNGG 1 cut(s) 551
BsmFI GGGAC 2 cut(s) 220, 439
Bsp143I GATC 1 cut(s) 292
BspCNI CTCAG 2 cut(s) 154, 530
BspHI TCATGA 1 cut(s) 388
BspLI GGNNCC 2 cut(s) 65, 847
BsrDI GCAATG 1 cut(s) 467
BsrI ACTGG 2 cut(s) 246, 384
BssMI GATC 1 cut(s) 292
Bst2UI CCWGG 2 cut(s) 285, 549
Bst4CI ACNGT 5 cut(s) 364, 430, 585, 596, 640
Bst6I CTCTTC 1 cut(s) 131
BstC8I GCNNGC 1 cut(s) 535
BstDEI CTNAG 3 cut(s) 122, 162, 517
BstF5I GGATG 3 cut(s) 90, 280, 575
BstKTI GATC 1 cut(s) 295
BstMBI GATC 1 cut(s) 292
BstNI CCWGG 2 cut(s) 285, 549
BstSCI CCNGG 2 cut(s) 283, 547
BstSFI CTRYAG 1 cut(s) 360
BstV1I GCAGC 2 cut(s) 223, 808
BtrI CACGTC 1 cut(s) 826
BtsCI GGATG 3 cut(s) 90, 280, 575
BtsI GCAGTG 1 cut(s) 760
BtsIMutI CAGTG 5 cut(s) 239, 435, 645, 707, 760
Cac8I GCNNGC 1 cut(s) 535
CciI TCATGA 1 cut(s) 388
Cfr13I GGNCC 1 cut(s) 845
CsiI ACCWGGT 1 cut(s) 547
Csp6I GTAC 3 cut(s) 25, 159, 365
CviAII CATG 6 cut(s) 316, 389, 764, 803, 813, 820
CviJI RGCY 7 cut(s) 166, 236, 262, 329, 574, 612, 799
CviKI_1 RGCY 7 cut(s) 166, 236, 262, 329, 574, 612, 799
CviQI GTAC 3 cut(s) 25, 159, 365
DdeI CTNAG 3 cut(s) 122, 162, 517
DpnI GATC 1 cut(s) 294
DpnII GATC 1 cut(s) 292
DraIII CACNNNGTG 2 cut(s) 551, 739
Eam1104I CTCTTC 1 cut(s) 131
EarI CTCTTC 1 cut(s) 131
Eco47I GGWCC 1 cut(s) 845
EcoRI GAATTC 1 cut(s) 403
EcoRII CCWGG 2 cut(s) 283, 547
FaeI CATG 6 cut(s) 319, 392, 767, 806, 816, 823
FalI AAGNNNNNCTT 2 cut(s) 97, 129
FaqI GGGAC 2 cut(s) 220, 439
FatI CATG 6 cut(s) 315, 388, 763, 802, 812, 819
FbaI TGATCA 1 cut(s) 292
FblI GTMKAC 1 cut(s) 558
Fnu4HI GCNGC 2 cut(s) 237, 797
FokI GGATG 3 cut(s) 77, 267, 582
Fsp4HI GCNGC 2 cut(s) 237, 797
FspBI CTAG 4 cut(s) 95, 231, 441, 480
GluI GCNGC 2 cut(s) 237, 797
GsuI CTGGAG 1 cut(s) 263
HapII CCGG 1 cut(s) 697
Hin1II CATG 6 cut(s) 319, 392, 767, 806, 816, 823
HinfI GANTC 3 cut(s) 200, 379, 515
HpaII CCGG 1 cut(s) 697
HphI GGTGA 3 cut(s) 691, 799, 841
Hpy166II GTNNAC 1 cut(s) 559
Hpy188I TCNGA 4 cut(s) 22, 301, 409, 860
Hpy188III TCNNGA 1 cut(s) 389
Hpy8I GTNNAC 1 cut(s) 559
HpyAV CCTTC 2 cut(s) 703, 826
HpyCH4III ACNGT 5 cut(s) 364, 430, 585, 596, 640
HpyCH4IV ACGT 4 cut(s) 27, 131, 411, 825
HpyCH4V TGCA 4 cut(s) 239, 472, 663, 796
HpyF3I CTNAG 3 cut(s) 122, 162, 517
HpySE526I ACGT 4 cut(s) 27, 131, 411, 825
Hsp92II CATG 6 cut(s) 319, 392, 767, 806, 816, 823
Ksp22I TGATCA 1 cut(s) 292
Kzo9I GATC 1 cut(s) 292
LmnI GCTCC 1 cut(s) 244
LpnPI CCDG 9 cut(s) 189, 227, 270, 297, 397, 519, 534, 561, 710
Lsp1109I GCAGC 2 cut(s) 223, 808
LweI GCATC 2 cut(s) 289, 693
MabI ACCWGGT 1 cut(s) 547
MaeI CTAG 4 cut(s) 95, 231, 441, 480
MaeII ACGT 4 cut(s) 27, 131, 411, 825
MaeIII GTNAC 3 cut(s) 272, 520, 757
MalI GATC 1 cut(s) 294
MboI GATC 1 cut(s) 292
MboII GAAGA 2 cut(s) 105, 148
MfeI CAATTG 1 cut(s) 55
MluCI AATT 6 cut(s) 7, 55, 251, 309, 403, 840
MlyI GAGTC 1 cut(s) 509
MnlI CCTC 6 cut(s) 65, 416, 457, 556, 559, 810
MroXI GAANNNNTTC 2 cut(s) 112, 353
MseI TTAA 4 cut(s) 176, 398, 576, 615
MslI CAYNNNNRTG 2 cut(s) 656, 824
MspI CCGG 1 cut(s) 697
MspR9I CCNGG 2 cut(s) 285, 549
MunI CAATTG 1 cut(s) 55
MvaI CCWGG 2 cut(s) 285, 549
NdeII GATC 1 cut(s) 292
NlaIII CATG 6 cut(s) 319, 392, 767, 806, 816, 823
NlaIV GGNNCC 2 cut(s) 65, 847
NmuCI GTSAC 1 cut(s) 757
PagI TCATGA 1 cut(s) 388
PdmI GAANNNNTTC 2 cut(s) 112, 353
PfeI GAWTC 2 cut(s) 200, 379
PflMI CCANNNNNTGG 1 cut(s) 551
PfoI TCCNGGA 1 cut(s) 283
PkrI GCNGC 2 cut(s) 238, 798
PleI GAGTC 1 cut(s) 509
PpsI GAGTC 1 cut(s) 509
Psp6I CCWGG 2 cut(s) 283, 547
PspGI CCWGG 2 cut(s) 283, 547
PspN4I GGNNCC 2 cut(s) 65, 847
PspPI GGNCC 1 cut(s) 845
RsaI GTAC 3 cut(s) 26, 160, 366
RsaNI GTAC 3 cut(s) 25, 159, 365
RseI CAYNNNNRTG 2 cut(s) 656, 824
SaqAI TTAA 4 cut(s) 176, 398, 576, 615
SatI GCNGC 2 cut(s) 237, 797
Sau3AI GATC 1 cut(s) 292
Sau96I GGNCC 1 cut(s) 845
ScaI AGTACT 1 cut(s) 160
SchI GAGTC 1 cut(s) 509
ScrFI CCNGG 2 cut(s) 285, 549
SexAI ACCWGGT 1 cut(s) 547
SfaNI GCATC 2 cut(s) 289, 693
SfcI CTRYAG 1 cut(s) 360
SinI GGWCC 1 cut(s) 845
SmiMI CAYNNNNRTG 2 cut(s) 656, 824
Sse9I AATT 6 cut(s) 7, 55, 251, 309, 403, 840
SspMI CTAG 4 cut(s) 95, 231, 441, 480
StyD4I CCNGG 2 cut(s) 283, 547
TaaI ACNGT 5 cut(s) 364, 430, 585, 596, 640
TaiI ACGT 4 cut(s) 30, 134, 414, 828
TaqI TCGA 1 cut(s) 331
TasI AATT 6 cut(s) 7, 55, 251, 309, 403, 840
TatI WGTACW 2 cut(s) 158, 364
TfiI GAWTC 2 cut(s) 200, 379
Tru1I TTAA 4 cut(s) 176, 398, 576, 615
Tru9I TTAA 4 cut(s) 176, 398, 576, 615
TscAI CASTG 5 cut(s) 246, 435, 645, 714, 760
TseFI GTSAC 1 cut(s) 757
TseI GCWGC 2 cut(s) 236, 796
Tsp45I GTSAC 1 cut(s) 757
TspDTI ATGAA 4 cut(s) 392, 416, 640, 801
TspRI CASTG 5 cut(s) 246, 435, 645, 714, 760
Van91I CCANNNNNTGG 1 cut(s) 551
VpaK11BI GGWCC 1 cut(s) 845
XapI RAATTY 3 cut(s) 7, 251, 403
XmiI GTMKAC 1 cut(s) 558
XmnI GAANNNNTTC 2 cut(s) 112, 353
XspI CTAG 4 cut(s) 95, 231, 441, 480
ZrmI AGTACT 1 cut(s) 160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.