RLG00000019841

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0001058
Physical Location & Seq
Forward (+)
57345539 .. 57347219
1681 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019841

Sequence Viewer

Length: 1593 bp
ATGAATGGTCAAATCCAAATCCTAGAGGAACTTCTTTTGTGGTCTCCCGGATCCTTGAAAGTTTGCACTGGAAACGGAGAAAATGTGTTTCATCTTTCTGTAAGATTCAACAGATATGATGTGTTCACCTCTTTGGCAAAGAATTATAACCGCACCAGCCTGCTCAACCAGGCTGACAAGCAGGGTAACACAGTCTTACATCTTGCTGTCTCTGCAGGGAACACTAGATTATCAGAGTACATAATCAGCAATACTGCAGTAGATGTCAATTGTAGGAACCAAAGAGGTCAAACAGCATTGGACATCCTAAACGAGCAAAGCATATCGGCTGATCTTAGACATACGTTGAAGAGATTTGGTGGCAGAACAAGTACTGAGCTGTTCTCTTTAACCCCAAAGGTTGATGAGATATATTCTGGGACTACAACAACATCAGAAAGTCCTAGAGCTGCACTGGAGAAAGAATTTGATAGGATTTTTGAATTTAACACGCGTCCAGGAAGTGATCAATCTGATTGTGAAATTGGCATGGGGCGTATGGCTCGAAACAATCAACAAATGGAACACTTCGCTACAGTACAAGCAGAGATGAATCCCAGTCTTGAAGTTGTGATAAATTCTGATGTTCCTTTTAGCTCAGAATCGTATAGAACAAGTATGAGCTCCCCAGTCTTCAGTCCACAGCAGCTTCGAAAGCCAGGAGGGAAAGTGGGTAAAAGGAAGCAATATGAGATATATAGAGAGGCATTGCAAAATACTAGGAACACTATCACAATAGTTGCTGTTTTGATTGCCTCAGTTACTTTTACTGCTGGCATAAACCCACCTGGAGGTGTCTACCAGGAGGGATGGCTTAAAGGACAATCAGTAGTTGGCAGAACAACAGCTTTTAAGGTCTTCACAATAAGCAACACAGCGGCATTGTTCATATCCATGTGCATTGTTATTTTATTGGTGAGCATCATTCCCTTCCGGCGAAAATCGCTGATGAAACTACTTGTGGTTGCTCACAAAGTCCTGTGGGTGGCGGTGTCACTCATGGCCACAGCTTACATTGCAGCCTCATGGATAATCATGCCACATGGACGTGCTGAAGGAGAAAATTGGACCCTTGAAGTTGTGATATCTGTGTGTGCAGGGACTGTGGGATCTATGTTCTTATTTCTTGGTGCCACCTGGACCCGACACTGGTTGATGAAATTGAAATGGAGGAAACAGCAACGTACAACTGCAACACGAGCACAGAAACAAGCACAAAGGCAACCAGCACAAGCAGAGCAACATGCACAAAGACAAGCAGCACGAGCAGAGCAACAAGCACAAAAACAAGCAGCACGAGCACAGCAAGAAGCACAAAGACAAACAGCACGAGCAGAGCAACAAGCACAAAGACAAGCAGCACGAGCACAGAAACAAGCACAAAGACAAGCAGCACGAGCACAGAAACAAGCACAAAGACAAGCAGCACGAGCACAGAAACGAGCGCATAAAATGGCACAGAGAAGAACAGAGGAAACACCAGAATATAGCTCGTCAGTATCCACGAACTCCCCTGCTGAGAGTTGCAAAGAACTAGGATATCATACATACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 Ank_4 Ank_5 PGG

Protein Analysis

531

Amino Acids

59.29

Weight (kDa)

10.03

Isoelectric Point (pI)

40.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 2 - 92 1.4e-07 Ankyrin repeats (3 copies)
Ank_5 PF13857 54 - 102 1.3e-06 Ankyrin repeats (many copies)
PGG PF13962 248 - 357 8e-31 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 147
AccB1I GGYRCC 1 cut(s) 1169
AccI GTMKAC 1 cut(s) 837
AccII CGCG 1 cut(s) 493
AciI CCGC 3 cut(s) 151, 917, 1028
AclWI GGATC 3 cut(s) 45, 58, 1156
AcoI YGGCCR 1 cut(s) 1041
AcsI RAATTY 3 cut(s) 464, 482, 616
AcuI CTGAAG 2 cut(s) 658, 1113
AfaI GTAC 4 cut(s) 239, 373, 579, 1225
AfiI CCNNNNNNNGG 3 cut(s) 830, 1024, 1188
AflIII ACRYGT 1 cut(s) 491
AgsI TTSAA 7 cut(s) 58, 109, 349, 482, 605, 1115, 1204
AjiI CACGTC 1 cut(s) 1088
AjnI CCWGG 6 cut(s) 168, 496, 697, 826, 840, 1175
AluBI AGCT 8 cut(s) 379, 449, 636, 663, 688, 887, 1049, 1530
AluI AGCT 8 cut(s) 379, 449, 636, 663, 688, 887, 1049, 1530
Alw21I GWGCWC 6 cut(s) 665, 1243, 1342, 1408, 1441, 1474
Alw26I GTCTC 2 cut(s) 48, 214
AlwI GGATC 3 cut(s) 45, 58, 1156
AlwNI CAGNNNCTG 1 cut(s) 1142
AoxI GGCC 1 cut(s) 1041
ApeKI GCWGC 8 cut(s) 449, 685, 1058, 1298, 1331, 1397, 1430, 1463
ApoI RAATTY 3 cut(s) 464, 482, 616
AspLEI GCGC 1 cut(s) 1486
AspS9I GGNCC 2 cut(s) 1107, 1179
AsuC2I CCSGG 1 cut(s) 48
AsuHPI GGTGA 2 cut(s) 118, 967
AsuII TTCGAA 1 cut(s) 691
AvaII GGWCC 2 cut(s) 1107, 1179
BalI TGGCCA 1 cut(s) 1043
BamHI GGATCC 1 cut(s) 50
BanI GGYRCC 1 cut(s) 1169
BanII GRGCYC 1 cut(s) 665
BauI CACGAG 7 cut(s) 1236, 1302, 1335, 1368, 1401, 1434, 1467
BbsI GAAGAC 2 cut(s) 664, 889
Bbv12I GWGCWC 6 cut(s) 665, 1243, 1342, 1408, 1441, 1474
BbvI GCAGC 8 cut(s) 436, 697, 1070, 1310, 1343, 1409, 1442, 1475
BccI CCATC 1 cut(s) 843
BciT130I CCWGG 6 cut(s) 170, 498, 699, 828, 842, 1177
BciVI GTATCC 1 cut(s) 1549
BclI TGATCA 1 cut(s) 505
BcnI CCSGG 1 cut(s) 48
BcoDI GTCTC 2 cut(s) 48, 214
BfaI CTAG 5 cut(s) 23, 225, 444, 759, 1574
BfmI CTRYAG 3 cut(s) 213, 255, 573
BfuI GTATCC 1 cut(s) 1549
BisI GCNGC 9 cut(s) 450, 686, 918, 1059, 1299, 1332, 1398, 1431, 1464
BlsI GCNGC 9 cut(s) 451, 687, 919, 1060, 1300, 1333, 1399, 1432, 1465
BmcAI AGTACT 1 cut(s) 373
Bme1390I CCNGG 7 cut(s) 48, 170, 498, 699, 828, 842, 1177
Bme18I GGWCC 2 cut(s) 1107, 1179
BmgBI CACGTC 1 cut(s) 1088
BmgT120I GGNCC 2 cut(s) 1107, 1179
BmiI GGNNCC 5 cut(s) 52, 278, 1109, 1171, 1181
BmrFI CCNGG 7 cut(s) 48, 170, 498, 699, 828, 842, 1177
BmrI ACTGGG 2 cut(s) 591, 662
BmsI GCATC 1 cut(s) 969
BmuI ACTGGG 2 cut(s) 591, 662
BpiI GAAGAC 2 cut(s) 664, 889
BplI GAGNNNNNCTC 2 cut(s) 368, 400
BpmI CTGGAG 2 cut(s) 476, 849
Bpu14I TTCGAA 1 cut(s) 691
BpuMI CCSGG 1 cut(s) 48
BsaI GGTCTC 1 cut(s) 48
BsaXI ACNNNNNCTCC 4 cut(s) 69, 99, 693, 723
Bsc4I CCNNNNNNNGG 3 cut(s) 830, 1024, 1188
Bse1I ACTGG 5 cut(s) 73, 459, 597, 668, 1193
Bse3DI GCAATG 2 cut(s) 746, 1053
BseBI CCWGG 6 cut(s) 170, 498, 699, 828, 842, 1177
BseGI GGATG 2 cut(s) 303, 854
BseLI CCNNNNNNNGG 3 cut(s) 830, 1024, 1188
BseMI GCAATG 2 cut(s) 746, 1053
BseMII CTCAG 4 cut(s) 366, 651, 810, 1548
BseNI ACTGG 5 cut(s) 73, 459, 597, 668, 1193
BseXI GCAGC 8 cut(s) 436, 697, 1070, 1310, 1343, 1409, 1442, 1475
BsgI GTGCAG 2 cut(s) 435, 1155
Bsh1236I CGCG 1 cut(s) 493
BshFI GGCC 1 cut(s) 1043
BshNI GGYRCC 1 cut(s) 1169
BsiHKAI GWGCWC 6 cut(s) 665, 1243, 1342, 1408, 1441, 1474
BsiSI CCGG 2 cut(s) 48, 973
BslFI GGGAC 2 cut(s) 433, 1153
BslI CCNNNNNNNGG 3 cut(s) 830, 1024, 1188
BsmAI GTCTC 2 cut(s) 48, 214
BsmFI GGGAC 2 cut(s) 433, 1153
BsnI GGCC 1 cut(s) 1043
Bso31I GGTCTC 1 cut(s) 48
Bsp119I TTCGAA 1 cut(s) 691
Bsp1286I GDGCHC 6 cut(s) 665, 1243, 1342, 1408, 1441, 1474
Bsp143I GATC 4 cut(s) 50, 331, 505, 1148
BspACI CCGC 3 cut(s) 151, 917, 1028
BspANI GGCC 1 cut(s) 1043
BspCNI CTCAG 4 cut(s) 367, 650, 809, 1549
BspFNI CGCG 1 cut(s) 493
BspLI GGNNCC 5 cut(s) 52, 278, 1109, 1171, 1181
BspMAI CTGCAG 2 cut(s) 217, 259
BspPI GGATC 3 cut(s) 45, 58, 1156
BspT104I TTCGAA 1 cut(s) 691
BspT107I GGYRCC 1 cut(s) 1169
BspTNI GGTCTC 1 cut(s) 48
BsrDI GCAATG 2 cut(s) 746, 1053
BsrI ACTGG 5 cut(s) 73, 459, 597, 668, 1193
BssMI GATC 4 cut(s) 50, 331, 505, 1148
BssSI CACGAG 7 cut(s) 1236, 1302, 1335, 1368, 1401, 1434, 1467
Bst2BI CACGAG 7 cut(s) 1236, 1302, 1335, 1368, 1401, 1434, 1467
Bst2UI CCWGG 6 cut(s) 170, 498, 699, 828, 842, 1177
Bst4CI ACNGT 3 cut(s) 193, 577, 1144
Bst6I CTCTTC 1 cut(s) 344
BstBI TTCGAA 1 cut(s) 691
BstC8I GCNNGC 2 cut(s) 161, 814
BstDEI CTNAG 5 cut(s) 335, 375, 637, 796, 1557
BstF5I GGATG 2 cut(s) 303, 854
BstFNI CGCG 1 cut(s) 493
BstHHI GCGC 1 cut(s) 1486
BstKTI GATC 4 cut(s) 53, 334, 508, 1151
BstMAI GTCTC 2 cut(s) 48, 214
BstMBI GATC 4 cut(s) 50, 331, 505, 1148
BstNI CCWGG 6 cut(s) 170, 498, 699, 828, 842, 1177
BstNSI RCATGY 1 cut(s) 1286
BstSCI CCNGG 7 cut(s) 46, 168, 496, 697, 826, 840, 1175
BstSFI CTRYAG 3 cut(s) 213, 255, 573
BstUI CGCG 1 cut(s) 493
BstV1I GCAGC 8 cut(s) 436, 697, 1070, 1310, 1343, 1409, 1442, 1475
BstV2I GAAGAC 2 cut(s) 664, 889
BstX2I RGATCY 2 cut(s) 50, 1148
BstYI RGATCY 2 cut(s) 50, 1148
BsuI GTATCC 1 cut(s) 1549
BsuRI GGCC 1 cut(s) 1043
BtrI CACGTC 1 cut(s) 1088
BtsCI GGATG 2 cut(s) 303, 854
BtsIMutI CAGTG 3 cut(s) 66, 452, 1186
Cac8I GCNNGC 2 cut(s) 161, 814
CaiI CAGNNNCTG 1 cut(s) 1142
CfoI GCGC 1 cut(s) 1486
Cfr13I GGNCC 2 cut(s) 1107, 1179
CseI GACGC 1 cut(s) 482
Csp6I GTAC 4 cut(s) 238, 372, 578, 1224
CviAII CATG 7 cut(s) 529, 934, 1039, 1065, 1075, 1082, 1283
CviQI GTAC 4 cut(s) 238, 372, 578, 1224
DdeI CTNAG 5 cut(s) 335, 375, 637, 796, 1557
DpnI GATC 4 cut(s) 52, 333, 507, 1150
DpnII GATC 4 cut(s) 50, 331, 505, 1148
EaeI YGGCCR 1 cut(s) 1041
Eam1104I CTCTTC 1 cut(s) 344
EarI CTCTTC 1 cut(s) 344
Ecl136II GAGCTC 1 cut(s) 663
Eco24I GRGCYC 1 cut(s) 665
Eco31I GGTCTC 1 cut(s) 48
Eco32I GATATC 2 cut(s) 1125, 1580
Eco47I GGWCC 2 cut(s) 1107, 1179
Eco53kI GAGCTC 1 cut(s) 663
Eco57I CTGAAG 2 cut(s) 658, 1113
EcoICRI GAGCTC 1 cut(s) 663
EcoRII CCWGG 6 cut(s) 168, 496, 697, 826, 840, 1175
EcoRV GATATC 2 cut(s) 1125, 1580
EcoT38I GRGCYC 1 cut(s) 665
FaeI CATG 7 cut(s) 532, 937, 1042, 1068, 1078, 1085, 1286
FaqI GGGAC 2 cut(s) 433, 1153
FatI CATG 7 cut(s) 528, 933, 1038, 1064, 1074, 1081, 1282
FbaI TGATCA 1 cut(s) 505
FblI GTMKAC 1 cut(s) 837
Fnu4HI GCNGC 9 cut(s) 450, 686, 918, 1059, 1299, 1332, 1398, 1431, 1464
FokI GGATG 2 cut(s) 290, 861
FriOI GRGCYC 1 cut(s) 665
Fsp4HI GCNGC 9 cut(s) 450, 686, 918, 1059, 1299, 1332, 1398, 1431, 1464
FspBI CTAG 5 cut(s) 23, 225, 444, 759, 1574
GlaI GCGC 1 cut(s) 1485
GluI GCNGC 9 cut(s) 450, 686, 918, 1059, 1299, 1332, 1398, 1431, 1464
GsuI CTGGAG 2 cut(s) 476, 849
HaeIII GGCC 1 cut(s) 1043
HapII CCGG 2 cut(s) 48, 973
HgaI GACGC 1 cut(s) 482
HhaI GCGC 1 cut(s) 1486
Hin1II CATG 7 cut(s) 532, 937, 1042, 1068, 1078, 1085, 1286
Hin6I GCGC 1 cut(s) 1484
HinP1I GCGC 1 cut(s) 1484
HinfI GANTC 3 cut(s) 105, 592, 641
HpaII CCGG 2 cut(s) 48, 973
HphI GGTGA 2 cut(s) 118, 967
Hpy166II GTNNAC 3 cut(s) 126, 680, 838
Hpy188I TCNGA 5 cut(s) 235, 436, 514, 622, 640
Hpy188III TCNNGA 1 cut(s) 602
Hpy8I GTNNAC 3 cut(s) 126, 680, 838
HpyAV CCTTC 2 cut(s) 979, 1088
HpyCH4III ACNGT 3 cut(s) 193, 577, 1144
HpyCH4IV ACGT 3 cut(s) 344, 1087, 1222
HpyF3I CTNAG 5 cut(s) 335, 375, 637, 796, 1557
HpySE526I ACGT 3 cut(s) 344, 1087, 1222
Hsp92II CATG 7 cut(s) 532, 937, 1042, 1068, 1078, 1085, 1286
HspAI GCGC 1 cut(s) 1484
Ksp22I TGATCA 1 cut(s) 505
Kzo9I GATC 4 cut(s) 50, 331, 505, 1148
LmnI GCTCC 1 cut(s) 668
Lsp1109I GCAGC 8 cut(s) 436, 697, 1070, 1310, 1343, 1409, 1442, 1475
LweI GCATC 1 cut(s) 969
MaeI CTAG 5 cut(s) 23, 225, 444, 759, 1574
MaeII ACGT 3 cut(s) 344, 1087, 1222
MaeIII GTNAC 3 cut(s) 185, 799, 1032
MalI GATC 4 cut(s) 52, 333, 507, 1150
MboI GATC 4 cut(s) 50, 331, 505, 1148
MboII GAAGA 4 cut(s) 361, 664, 889, 1515
MfeI CAATTG 1 cut(s) 268
MflI RGATCY 2 cut(s) 50, 1148
MhlI GDGCHC 6 cut(s) 665, 1243, 1342, 1408, 1441, 1474
MlsI TGGCCA 1 cut(s) 1043
MluCI AATT 8 cut(s) 142, 268, 464, 482, 522, 616, 1102, 1199
MluI ACGCGT 1 cut(s) 491
MluNI TGGCCA 1 cut(s) 1043
Mox20I TGGCCA 1 cut(s) 1043
MscI TGGCCA 1 cut(s) 1043
MseI TTAA 4 cut(s) 389, 486, 855, 891
MslI CAYNNNNRTG 2 cut(s) 932, 1086
Msp20I TGGCCA 1 cut(s) 1043
MspA1I CMGCKG 1 cut(s) 917
MspI CCGG 2 cut(s) 48, 973
MspR9I CCNGG 7 cut(s) 48, 170, 498, 699, 828, 842, 1177
MunI CAATTG 1 cut(s) 268
MvaI CCWGG 6 cut(s) 170, 498, 699, 828, 842, 1177
MvnI CGCG 1 cut(s) 493
NciI CCSGG 1 cut(s) 48
NdeII GATC 4 cut(s) 50, 331, 505, 1148
NlaIII CATG 7 cut(s) 532, 937, 1042, 1068, 1078, 1085, 1286
NlaIV GGNNCC 5 cut(s) 52, 278, 1109, 1171, 1181
NmuCI GTSAC 1 cut(s) 1032
NspI RCATGY 1 cut(s) 1286
NspV TTCGAA 1 cut(s) 691
PfeI GAWTC 3 cut(s) 105, 592, 641
PfoI TCCNGGA 2 cut(s) 46, 496
PkrI GCNGC 9 cut(s) 451, 687, 919, 1060, 1300, 1333, 1399, 1432, 1465
PsiI TTATAA 1 cut(s) 147
Psp124BI GAGCTC 1 cut(s) 665
Psp6I CCWGG 6 cut(s) 168, 496, 697, 826, 840, 1175
PspGI CCWGG 6 cut(s) 168, 496, 697, 826, 840, 1175
PspN4I GGNNCC 5 cut(s) 52, 278, 1109, 1171, 1181
PspPI GGNCC 2 cut(s) 1107, 1179
PstI CTGCAG 2 cut(s) 217, 259
PstNI CAGNNNCTG 1 cut(s) 1142
PsuI RGATCY 2 cut(s) 50, 1148
RsaI GTAC 4 cut(s) 239, 373, 579, 1225
RsaNI GTAC 4 cut(s) 238, 372, 578, 1224
RseI CAYNNNNRTG 2 cut(s) 932, 1086
SacI GAGCTC 1 cut(s) 665
SaqAI TTAA 4 cut(s) 389, 486, 855, 891
SatI GCNGC 9 cut(s) 450, 686, 918, 1059, 1299, 1332, 1398, 1431, 1464
Sau3AI GATC 4 cut(s) 50, 331, 505, 1148
Sau96I GGNCC 2 cut(s) 1107, 1179
ScaI AGTACT 1 cut(s) 373
ScrFI CCNGG 7 cut(s) 48, 170, 498, 699, 828, 842, 1177
SduI GDGCHC 6 cut(s) 665, 1243, 1342, 1408, 1441, 1474
SfaNI GCATC 1 cut(s) 969
SfcI CTRYAG 3 cut(s) 213, 255, 573
SfuI TTCGAA 1 cut(s) 691
SinI GGWCC 2 cut(s) 1107, 1179
SmiMI CAYNNNNRTG 2 cut(s) 932, 1086
Sse9I AATT 8 cut(s) 142, 268, 464, 482, 522, 616, 1102, 1199
SsiI CCGC 3 cut(s) 151, 917, 1028
SspMI CTAG 5 cut(s) 23, 225, 444, 759, 1574
SstI GAGCTC 1 cut(s) 665
StyD4I CCNGG 7 cut(s) 46, 168, 496, 697, 826, 840, 1175
TaaI ACNGT 3 cut(s) 193, 577, 1144
TaiI ACGT 3 cut(s) 347, 1090, 1225
TaqI TCGA 2 cut(s) 544, 691
TasI AATT 8 cut(s) 142, 268, 464, 482, 522, 616, 1102, 1199
TatI WGTACW 3 cut(s) 237, 371, 577
TauI GCSGC 1 cut(s) 920
TfiI GAWTC 3 cut(s) 105, 592, 641
Tru1I TTAA 4 cut(s) 389, 486, 855, 891
Tru9I TTAA 4 cut(s) 389, 486, 855, 891
TscAI CASTG 3 cut(s) 73, 459, 1193
TseFI GTSAC 1 cut(s) 1032
TseI GCWGC 8 cut(s) 449, 685, 1058, 1298, 1331, 1397, 1430, 1463
Tsp45I GTSAC 1 cut(s) 1032
TspDTI ATGAA 6 cut(s) 17, 80, 605, 916, 1004, 1211
TspGWI ACGGA 1 cut(s) 90
TspRI CASTG 3 cut(s) 73, 459, 1193
VpaK11BI GGWCC 2 cut(s) 1107, 1179
XapI RAATTY 3 cut(s) 464, 482, 616
XceI RCATGY 1 cut(s) 1286
XmiI GTMKAC 1 cut(s) 837
XspI CTAG 5 cut(s) 23, 225, 444, 759, 1574
ZrmI AGTACT 1 cut(s) 373
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.