Rh2BG420800

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0001058
Physical Location & Seq
Forward (+)
59210087 .. 59210413
327 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG420800.1

Sequence Viewer

Length: 327 bp
ATGAAGAATTTCTTATGCAGAAAACTGGCGAAACAAAGAAACTCAGTGTGGCACCTTGCTGCAAGGTTCGGTCACATTGAGCTACTTGCCTTTATCATTGAGCTACTTCCTGACTTGGTTTCTATTGGAAACGTCAAGGGTGAAACTCCGTTACACGAAACTTGTTGCCAAGGGAATACCAATGTTGTGAAGCTGCTGGTAGAGGCCAATCCATATGTGATTGGTACTCTTAACCATGAAATGCAAACTGCTTTTTACATAGCCTGCAGTTATAGGCATGTTGATGTTGTCAAGTACATGGCACCAACCAGGGGTGTTAGACTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 Ank_4 Ank_5 PGG

Protein Analysis

108

Amino Acids

12.24

Weight (kDa)

9.02

Isoelectric Point (pI)

29.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 18 - 101 1.3e-13 Ankyrin repeats (3 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 51, 301
AcsI RAATTY 1 cut(s) 7
AfaI GTAC 2 cut(s) 226, 296
AfiI CCNNNNNNNGG 1 cut(s) 311
AjnI CCWGG 1 cut(s) 308
AluBI AGCT 3 cut(s) 82, 103, 193
AluI AGCT 3 cut(s) 82, 103, 193
AoxI GGCC 1 cut(s) 204
ApeKI GCWGC 2 cut(s) 59, 193
ApoI RAATTY 1 cut(s) 7
Asp700I GAANNNNTTC 1 cut(s) 8
AsuHPI GGTGA 1 cut(s) 152
BanI GGYRCC 2 cut(s) 51, 301
BbvI GCAGC 2 cut(s) 46, 180
BciT130I CCWGG 1 cut(s) 310
BfmI CTRYAG 1 cut(s) 265
BisI GCNGC 2 cut(s) 60, 194
BlsI GCNGC 2 cut(s) 61, 195
Bme1390I CCNGG 1 cut(s) 310
BmiI GGNNCC 2 cut(s) 53, 303
BmrFI CCNGG 1 cut(s) 310
BsaJI CCNNGG 2 cut(s) 169, 309
Bsc4I CCNNNNNNNGG 1 cut(s) 311
Bse1I ACTGG 1 cut(s) 30
BseBI CCWGG 1 cut(s) 310
BseDI CCNNGG 2 cut(s) 169, 309
BseLI CCNNNNNNNGG 1 cut(s) 311
BseMII CTCAG 1 cut(s) 57
BseNI ACTGG 1 cut(s) 30
BseXI GCAGC 2 cut(s) 46, 180
BshFI GGCC 1 cut(s) 206
BshNI GGYRCC 2 cut(s) 51, 301
BslI CCNNNNNNNGG 1 cut(s) 311
BsnI GGCC 1 cut(s) 206
BspANI GGCC 1 cut(s) 206
BspCNI CTCAG 1 cut(s) 56
BspLI GGNNCC 2 cut(s) 53, 303
BspMAI CTGCAG 1 cut(s) 269
BspT107I GGYRCC 2 cut(s) 51, 301
BsrI ACTGG 1 cut(s) 30
BssECI CCNNGG 2 cut(s) 169, 309
BssT1I CCWWGG 1 cut(s) 169
Bst2UI CCWGG 1 cut(s) 310
BstC8I GCNNGC 1 cut(s) 265
BstDEI CTNAG 1 cut(s) 43
BstNI CCWGG 1 cut(s) 310
BstNSI RCATGY 1 cut(s) 281
BstSCI CCNGG 1 cut(s) 308
BstSFI CTRYAG 1 cut(s) 265
BstV1I GCAGC 2 cut(s) 46, 180
BsuRI GGCC 1 cut(s) 206
BtsIMutI CAGTG 1 cut(s) 51
Cac8I GCNNGC 1 cut(s) 265
Csp6I GTAC 2 cut(s) 225, 295
CviAII CATG 3 cut(s) 236, 278, 298
CviJI RGCY 5 cut(s) 82, 103, 193, 206, 263
CviKI_1 RGCY 5 cut(s) 82, 103, 193, 206, 263
CviQI GTAC 2 cut(s) 225, 295
DdeI CTNAG 1 cut(s) 43
Eco130I CCWWGG 1 cut(s) 169
EcoRII CCWGG 1 cut(s) 308
EcoT14I CCWWGG 1 cut(s) 169
ErhI CCWWGG 1 cut(s) 169
FaeI CATG 3 cut(s) 239, 281, 301
FaiI YATR 8 cut(s) 16, 214, 216, 237, 260, 273, 279, 299
FalI AAGNNNNNCTT 1 cut(s) 28
FatI CATG 3 cut(s) 235, 277, 297
FauNDI CATATG 1 cut(s) 214
Fnu4HI GCNGC 2 cut(s) 60, 194
Fsp4HI GCNGC 2 cut(s) 60, 194
GluI GCNGC 2 cut(s) 60, 194
HaeIII GGCC 1 cut(s) 206
Hin1II CATG 3 cut(s) 239, 281, 301
HinfI GANTC 1 cut(s) 321
HphI GGTGA 1 cut(s) 152
Hpy188I TCNGA 1 cut(s) 326
Hpy188III TCNNGA 1 cut(s) 110
HpyCH4IV ACGT 1 cut(s) 132
HpyCH4V TGCA 4 cut(s) 18, 62, 244, 267
HpyF3I CTNAG 1 cut(s) 43
HpySE526I ACGT 1 cut(s) 132
Hsp92II CATG 3 cut(s) 239, 281, 301
LpnPI CCDG 6 cut(s) 11, 123, 182, 277, 295, 322
Lsp1109I GCAGC 2 cut(s) 46, 180
MaeII ACGT 1 cut(s) 132
MaeIII GTNAC 2 cut(s) 71, 150
MboII GAAGA 1 cut(s) 16
MluCI AATT 1 cut(s) 7
MlyI GAGTC 1 cut(s) 315
MnlI CCTC 1 cut(s) 196
MroXI GAANNNNTTC 1 cut(s) 8
MseI TTAA 1 cut(s) 231
MslI CAYNNNNRTG 1 cut(s) 282
MspR9I CCNGG 1 cut(s) 310
MvaI CCWGG 1 cut(s) 310
NdeI CATATG 1 cut(s) 214
NlaIII CATG 3 cut(s) 239, 281, 301
NlaIV GGNNCC 2 cut(s) 53, 303
NmuCI GTSAC 1 cut(s) 71
NspI RCATGY 1 cut(s) 281
PdmI GAANNNNTTC 1 cut(s) 8
PkrI GCNGC 2 cut(s) 61, 195
PleI GAGTC 1 cut(s) 315
PpsI GAGTC 1 cut(s) 315
Psp6I CCWGG 1 cut(s) 308
PspGI CCWGG 1 cut(s) 308
PspN4I GGNNCC 2 cut(s) 53, 303
PstI CTGCAG 1 cut(s) 269
RsaI GTAC 2 cut(s) 226, 296
RsaNI GTAC 2 cut(s) 225, 295
RseI CAYNNNNRTG 1 cut(s) 282
SaqAI TTAA 1 cut(s) 231
SatI GCNGC 2 cut(s) 60, 194
SchI GAGTC 1 cut(s) 315
ScrFI CCNGG 1 cut(s) 310
SetI ASST 6 cut(s) 57, 68, 84, 105, 135, 195
SfcI CTRYAG 1 cut(s) 265
SmiMI CAYNNNNRTG 1 cut(s) 282
Sse9I AATT 1 cut(s) 7
StyD4I CCNGG 1 cut(s) 308
StyI CCWWGG 1 cut(s) 169
TaiI ACGT 1 cut(s) 135
TaqII GACCGA 1 cut(s) 59
TasI AATT 1 cut(s) 7
TatI WGTACW 1 cut(s) 294
Tru1I TTAA 1 cut(s) 231
Tru9I TTAA 1 cut(s) 231
TscAI CASTG 1 cut(s) 51
TseFI GTSAC 1 cut(s) 71
TseI GCWGC 2 cut(s) 59, 193
Tsp45I GTSAC 1 cut(s) 71
TspDTI ATGAA 2 cut(s) 17, 252
TspGWI ACGGA 1 cut(s) 138
TspRI CASTG 1 cut(s) 51
XapI RAATTY 1 cut(s) 7
XceI RCATGY 1 cut(s) 281
XmnI GAANNNNTTC 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.