Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001693

Physical Location & Seq

Genomic Coordinates Forward (+)

41257229 .. 41258846

Gene Structure 1618 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002888

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGAACACGATGCACTACATGGAGGTGAACACCACTGGTACCACCGACAAGCTCAACGAGGTCGACATCGAGTCCGGCGAGGTCTTGTACCCCGGCCCCTCAGATGAGATGGAAATGGCAAAGGCTAGTGAGGAAGTTGTGGTGGAGAATTCTAATACATGTGAAGAATGTGGTGCTAGTTTCAAGAAACCTGAATATCTCAAGCAGCATATGCAAAGCCATTCTCTTAAGATAGAGTTTTTGCAGGAATCAACATGTTTAAGAACTATACCGTTTGGATCGCGTGAAGCATTGGATCCCACCAAAGAACTCCAAAATGCGAATGTAGCAAATGGGCAGTTTGATAGATACTCTTATGATTCTTTCGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000182 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0008097 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019843 GO:0022613 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0042254 GO:0042273 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0080084 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR zf-C2H2

Protein Analysis

124

Amino Acids

13.87

Weight (kDa)

4.51

Isoelectric Point (pI)

55.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001693)

Species	Orthologous Gene IDs
malus_domestica	MD15G1186700.v1.1
prunus_persica	Prupe.4G066100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0336331 RchiOBHm_Chr6g0290001 RchiOBHm_Chr7g0227531
rosa_laevigata	RLG00000002888 RLG00000019365
rosa_multiflora	Rmu_sc0000565.1_g000023 Rmu_sc0000776.1_g000047 Rmu_sc0002131.1_g000031 Rmu_sc0002701.1_g000052 Rmu_sc0003318.1_g000004 Rmu_sc0004517.1_g000008 Rmu_sc0004877.1_g000002 Rmu_sc0039095.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033520 Rroxscaffold_1G00040810 Rroxscaffold_1G00040820 Rroxscaffold_2G00107400 Rroxscaffold_2G00116610 Rroxscaffold_3G00224610 Rroxscaffold_4G00304390 Rroxscaffold_4G00304400 Rroxscaffold_4G00315830 Rroxscaffold_5G00346140 Rroxscaffold_5G00380560 Rroxscaffold_6G00389400 Rroxscaffold_7G00183550 Rroxscaffold_7G00205640
rosa_rugosa	Rorug06G0035900
rosa_samantha	Rh1AG116800 Rh2BG425100 Rh2CG611600 Rh2DG432400 Rh3CG233600 Rh4AG247700 Rh4BG058900 Rh4CG156400 Rh5AG268300 Rh5AG485100 Rh5BG239200 Rh5BG398300 Rh6CG191700 Rh7AG359900 Rh7AG382100 Rh7AG403900 Rh7CG188000 Rh7CG378300 Rh7DG395000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	38
AccB1I	GGYRCC	1 cut(s)	38
AccI	GTMKAC	1 cut(s)	63
AccII	CGCG	1 cut(s)	283
AclWI	GGATC	3 cut(s)	286, 290, 303
AcsI	RAATTY	1 cut(s)	148
AfaI	GTAC	2 cut(s)	40, 89
AflII	CTTAAG	1 cut(s)	227
AflIII	ACRYGT	2 cut(s)	158, 254
AgsI	TTSAA	1 cut(s)	184
AhdI	GACNNNNNGTC	1 cut(s)	70
AluBI	AGCT	1 cut(s)	52
AluI	AGCT	1 cut(s)	52
AlwI	GGATC	3 cut(s)	286, 290, 303
AoxI	GGCC	1 cut(s)	94
ApeKI	GCWGC	1 cut(s)	205
ApoI	RAATTY	1 cut(s)	148
Asp718I	GGTACC	1 cut(s)	38
AspS9I	GGNCC	1 cut(s)	95
AsuC2I	CCSGG	1 cut(s)	93
AsuHPI	GGTGA	1 cut(s)	37
BamHI	GGATCC	1 cut(s)	295
BanI	GGYRCC	1 cut(s)	38
BbvI	GCAGC	1 cut(s)	217
BccI	CCATC	1 cut(s)	103
BcnI	CCSGG	1 cut(s)	93
BfaI	CTAG	2 cut(s)	126, 177
BfrI	CTTAAG	1 cut(s)	227
BisI	GCNGC	1 cut(s)	206
BlsI	GCNGC	1 cut(s)	207
Bme1390I	CCNGG	1 cut(s)	93
BmeRI	GACNNNNNGTC	1 cut(s)	70
BmgT120I	GGNCC	1 cut(s)	95
BmiI	GGNNCC	3 cut(s)	40, 97, 297
BmrFI	CCNGG	1 cut(s)	93
BpuEI	CTTGAG	1 cut(s)	185
BpuMI	CCSGG	1 cut(s)	93
BsaJI	CCNNGG	1 cut(s)	91
Bse1I	ACTGG	1 cut(s)	40
BseDI	CCNNGG	1 cut(s)	91
BseMII	CTCAG	1 cut(s)	114
BseNI	ACTGG	1 cut(s)	40
BseXI	GCAGC	1 cut(s)	217
Bsh1236I	CGCG	1 cut(s)	283
BshFI	GGCC	1 cut(s)	96
BshNI	GGYRCC	1 cut(s)	38
BsiSI	CCGG	2 cut(s)	75, 93
BsnI	GGCC	1 cut(s)	96
Bsp143I	GATC	2 cut(s)	278, 295
BspANI	GGCC	1 cut(s)	96
BspCNI	CTCAG	1 cut(s)	113
BspFNI	CGCG	1 cut(s)	283
BspLI	GGNNCC	3 cut(s)	40, 97, 297
BspPI	GGATC	3 cut(s)	286, 290, 303
BspT107I	GGYRCC	1 cut(s)	38
BspTI	CTTAAG	1 cut(s)	227
BsrI	ACTGG	1 cut(s)	40
BssECI	CCNNGG	1 cut(s)	91
BssMI	GATC	2 cut(s)	278, 295
Bst4CI	ACNGT	1 cut(s)	273
BstAFI	CTTAAG	1 cut(s)	227
BstAPI	GCANNNNNTGC	1 cut(s)	211
BstDEI	CTNAG	1 cut(s)	100
BstFNI	CGCG	1 cut(s)	283
BstKTI	GATC	2 cut(s)	281, 298
BstMBI	GATC	2 cut(s)	278, 295
BstMWI	GCNNNNNNNGC	2 cut(s)	211, 326
BstNSI	RCATGY	2 cut(s)	162, 258
BstSCI	CCNGG	1 cut(s)	91
BstUI	CGCG	1 cut(s)	283
BstV1I	GCAGC	1 cut(s)	217
BstX2I	RGATCY	1 cut(s)	295
BstYI	RGATCY	1 cut(s)	295
BsuRI	GGCC	1 cut(s)	96
BtsIMutI	CAGTG	1 cut(s)	33
Cfr13I	GGNCC	1 cut(s)	95
Csp6I	GTAC	2 cut(s)	39, 88
CviAII	CATG	3 cut(s)	19, 159, 255
CviJI	RGCY	4 cut(s)	52, 96, 125, 219
CviKI_1	RGCY	4 cut(s)	52, 96, 125, 219
CviQI	GTAC	2 cut(s)	39, 88
DdeI	CTNAG	1 cut(s)	100
DpnI	GATC	2 cut(s)	280, 297
DpnII	GATC	2 cut(s)	278, 295
DriI	GACNNNNNGTC	1 cut(s)	70
Eam1105I	GACNNNNNGTC	1 cut(s)	70
EcoRI	GAATTC	1 cut(s)	148
FaeI	CATG	3 cut(s)	22, 162, 258
FaiI	YATR	7 cut(s)	20, 160, 210, 212, 256, 269, 357
FatI	CATG	3 cut(s)	18, 158, 254
FauNDI	CATATG	1 cut(s)	210
FblI	GTMKAC	1 cut(s)	63
Fnu4HI	GCNGC	1 cut(s)	206
Fsp4HI	GCNGC	1 cut(s)	206
FspBI	CTAG	2 cut(s)	126, 177
GluI	GCNGC	1 cut(s)	206
HaeIII	GGCC	1 cut(s)	96
HapII	CCGG	2 cut(s)	75, 93
Hin1II	CATG	3 cut(s)	22, 162, 258
HincII	GTYRAC	1 cut(s)	64
HindII	GTYRAC	1 cut(s)	64
HinfI	GANTC	3 cut(s)	71, 248, 359
HpaII	CCGG	2 cut(s)	75, 93
HphI	GGTGA	1 cut(s)	37
Hpy166II	GTNNAC	2 cut(s)	28, 64
Hpy188I	TCNGA	1 cut(s)	103
Hpy188III	TCNNGA	1 cut(s)	184
Hpy8I	GTNNAC	2 cut(s)	28, 64
HpyCH4III	ACNGT	1 cut(s)	273
HpyCH4V	TGCA	3 cut(s)	13, 214, 244
HpyF10VI	GCNNNNNNNGC	2 cut(s)	211, 326
HpyF3I	CTNAG	1 cut(s)	100
Hsp92II	CATG	3 cut(s)	22, 162, 258
KpnI	GGTACC	1 cut(s)	42
Kzo9I	GATC	2 cut(s)	278, 295
LpnPI	CCDG	5 cut(s)	21, 88, 106, 204, 230
Lsp1109I	GCAGC	1 cut(s)	217
MaeI	CTAG	2 cut(s)	126, 177
MalI	GATC	2 cut(s)	280, 297
MboI	GATC	2 cut(s)	278, 295
MboII	GAAGA	1 cut(s)	176
MflI	RGATCY	1 cut(s)	295
MluCI	AATT	1 cut(s)	148
MlyI	GAGTC	1 cut(s)	80
MnlI	CCTC	5 cut(s)	16, 52, 73, 109, 124
MseI	TTAA	2 cut(s)	228, 260
MslI	CAYNNNNRTG	1 cut(s)	23
MspCI	CTTAAG	1 cut(s)	227
MspI	CCGG	2 cut(s)	75, 93
MspR9I	CCNGG	1 cut(s)	93
MvnI	CGCG	1 cut(s)	283
MwoI	GCNNNNNNNGC	2 cut(s)	211, 326
NciI	CCSGG	1 cut(s)	93
NdeI	CATATG	1 cut(s)	210
NdeII	GATC	2 cut(s)	278, 295
NlaIII	CATG	3 cut(s)	22, 162, 258
NlaIV	GGNNCC	3 cut(s)	40, 97, 297
NspI	RCATGY	2 cut(s)	162, 258
PciI	ACATGT	2 cut(s)	158, 254
PcsI	WCGNNNNNNNCGW	1 cut(s)	75
PfeI	GAWTC	2 cut(s)	248, 359
PkrI	GCNGC	1 cut(s)	207
PleI	GAGTC	1 cut(s)	79
PpsI	GAGTC	1 cut(s)	79
PscI	ACATGT	2 cut(s)	158, 254
PspN4I	GGNNCC	3 cut(s)	40, 97, 297
PspPI	GGNCC	1 cut(s)	95
PsuI	RGATCY	1 cut(s)	295
RsaI	GTAC	2 cut(s)	40, 89
RsaNI	GTAC	2 cut(s)	39, 88
RseI	CAYNNNNRTG	1 cut(s)	23
SalI	GTCGAC	1 cut(s)	62
SaqAI	TTAA	2 cut(s)	228, 260
SatI	GCNGC	1 cut(s)	206
Sau3AI	GATC	2 cut(s)	278, 295
Sau96I	GGNCC	1 cut(s)	95
SchI	GAGTC	1 cut(s)	80
ScrFI	CCNGG	1 cut(s)	93
SetI	ASST	5 cut(s)	27, 54, 63, 84, 193
SmiMI	CAYNNNNRTG	1 cut(s)	23
SmlI	CTYRAG	2 cut(s)	200, 227
SmoI	CTYRAG	2 cut(s)	200, 227
Sse9I	AATT	1 cut(s)	148
SspMI	CTAG	2 cut(s)	126, 177
StyD4I	CCNGG	1 cut(s)	91
TaaI	ACNGT	1 cut(s)	273
TaqI	TCGA	2 cut(s)	63, 69
TasI	AATT	1 cut(s)	148
TfiI	GAWTC	2 cut(s)	248, 359
Tru1I	TTAA	2 cut(s)	228, 260
Tru9I	TTAA	2 cut(s)	228, 260
TscAI	CASTG	1 cut(s)	40
TseI	GCWGC	1 cut(s)	205
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	40
Vha464I	CTTAAG	1 cut(s)	227
XapI	RAATTY	1 cut(s)	148
XceI	RCATGY	2 cut(s)	162, 258
XmiI	GTMKAC	1 cut(s)	63
XspI	CTAG	2 cut(s)	126, 177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.