Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003318.1

Orthogroup ID

OG0001693

Physical Location & Seq

Genomic Coordinates Forward (+)

22319 .. 22682

Gene Structure 364 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003318.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 213 bp

atggaggaagctgaagccgagacggaggggcctactttcagggacattaggcgctattactgcgattactgtggcatctgcaggtccaaaaagtccctcattgcttctcacgtcctcacccaccacaaggacgagagggatatggccgaggctaatggagatggcgattcagaagttgagaaagtccaatacttgccaggaatgtgggcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000182 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0008097 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019843 GO:0022613 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0042254 GO:0042273 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0080084 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR zf-C2H2

Protein Analysis

70

Amino Acids

8.04

Weight (kDa)

4.88

Isoelectric Point (pI)

42.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001693)

Species	Orthologous Gene IDs
malus_domestica	MD15G1186700.v1.1
prunus_persica	Prupe.4G066100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0336331 RchiOBHm_Chr6g0290001 RchiOBHm_Chr7g0227531
rosa_laevigata	RLG00000002888 RLG00000019365
rosa_multiflora	Rmu_sc0000565.1_g000023 Rmu_sc0000776.1_g000047 Rmu_sc0002131.1_g000031 Rmu_sc0002701.1_g000052 Rmu_sc0003318.1_g000004 Rmu_sc0004517.1_g000008 Rmu_sc0004877.1_g000002 Rmu_sc0039095.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033520 Rroxscaffold_1G00040810 Rroxscaffold_1G00040820 Rroxscaffold_2G00107400 Rroxscaffold_2G00116610 Rroxscaffold_3G00224610 Rroxscaffold_4G00304390 Rroxscaffold_4G00304400 Rroxscaffold_4G00315830 Rroxscaffold_5G00346140 Rroxscaffold_5G00380560 Rroxscaffold_6G00389400 Rroxscaffold_7G00183550 Rroxscaffold_7G00205640
rosa_rugosa	Rorug06G0035900
rosa_samantha	Rh1AG116800 Rh2BG425100 Rh2CG611600 Rh2DG432400 Rh3CG233600 Rh4AG247700 Rh4BG058900 Rh4CG156400 Rh5AG268300 Rh5AG485100 Rh5BG239200 Rh5BG398300 Rh6CG191700 Rh7AG359900 Rh7AG382100 Rh7AG403900 Rh7CG188000 Rh7CG378300 Rh7DG395000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	72
AcoI	YGGCCR	1 cut(s)	144
AcuI	CTGAAG	1 cut(s)	33
AfiI	CCNNNNNNNGG	1 cut(s)	127
AjiI	CACGTC	1 cut(s)	112
AjnI	CCWGG	1 cut(s)	196
AluBI	AGCT	1 cut(s)	11
AluI	AGCT	1 cut(s)	11
Alw26I	GTCTC	1 cut(s)	14
AoxI	GGCC	2 cut(s)	29, 144
AspLEI	GCGC	1 cut(s)	54
AspS9I	GGNCC	2 cut(s)	29, 84
AsuHPI	GGTGA	1 cut(s)	109
AvaII	GGWCC	1 cut(s)	84
BccI	CCATC	1 cut(s)	155
BciT130I	CCWGG	1 cut(s)	198
BcoDI	GTCTC	1 cut(s)	14
BfmI	CTRYAG	1 cut(s)	79
BfoI	RGCGCY	1 cut(s)	55
BfuAI	ACCTGC	1 cut(s)	72
Bme1390I	CCNGG	1 cut(s)	198
Bme18I	GGWCC	1 cut(s)	84
BmgBI	CACGTC	1 cut(s)	112
BmgT120I	GGNCC	2 cut(s)	29, 84
BmiI	GGNNCC	1 cut(s)	30
BmrFI	CCNGG	1 cut(s)	198
BmsI	GCATC	1 cut(s)	84
BsaJI	CCNNGG	1 cut(s)	147
Bsc4I	CCNNNNNNNGG	1 cut(s)	127
Bse3DI	GCAATG	1 cut(s)	99
BseBI	CCWGG	1 cut(s)	198
BseDI	CCNNGG	1 cut(s)	147
BseLI	CCNNNNNNNGG	1 cut(s)	127
BseMI	GCAATG	1 cut(s)	99
BshFI	GGCC	2 cut(s)	31, 146
BslFI	GGGAC	2 cut(s)	56, 79
BslI	CCNNNNNNNGG	1 cut(s)	127
BsmAI	GTCTC	1 cut(s)	14
BsmBI	CGTCTC	1 cut(s)	14
BsmFI	GGGAC	2 cut(s)	56, 79
BsnI	GGCC	2 cut(s)	31, 146
BspANI	GGCC	2 cut(s)	31, 146
BspLI	GGNNCC	1 cut(s)	30
BspMAI	CTGCAG	1 cut(s)	83
BspMI	ACCTGC	1 cut(s)	72
BsrDI	GCAATG	1 cut(s)	99
BssECI	CCNNGG	1 cut(s)	147
Bst2UI	CCWGG	1 cut(s)	198
Bst4CI	ACNGT	1 cut(s)	71
BstDEI	CTNAG	1 cut(s)	210
BstH2I	RGCGCY	1 cut(s)	55
BstHHI	GCGC	1 cut(s)	54
BstMAI	GTCTC	1 cut(s)	14
BstMWI	GCNNNNNNNGC	1 cut(s)	60
BstNI	CCWGG	1 cut(s)	198
BstSCI	CCNGG	1 cut(s)	196
BstSFI	CTRYAG	1 cut(s)	79
BstXI	CCANNNNNNTGG	1 cut(s)	204
BsuRI	GGCC	2 cut(s)	31, 146
BtrI	CACGTC	1 cut(s)	112
BveI	ACCTGC	1 cut(s)	72
CfoI	GCGC	1 cut(s)	54
Cfr13I	GGNCC	2 cut(s)	29, 84
CviJI	RGCY	6 cut(s)	11, 17, 31, 146, 152, 209
CviKI_1	RGCY	6 cut(s)	11, 17, 31, 146, 152, 209
DdeI	CTNAG	1 cut(s)	210
EaeI	YGGCCR	1 cut(s)	144
Eco47I	GGWCC	1 cut(s)	84
Eco57I	CTGAAG	1 cut(s)	33
EcoO109I	RGGNCCY	1 cut(s)	29
EcoRII	CCWGG	1 cut(s)	196
Esp3I	CGTCTC	1 cut(s)	14
FaiI	YATR	1 cut(s)	143
FaqI	GGGAC	2 cut(s)	56, 79
GlaI	GCGC	1 cut(s)	53
HaeII	RGCGCY	1 cut(s)	55
HaeIII	GGCC	2 cut(s)	31, 146
HhaI	GCGC	1 cut(s)	54
Hin6I	GCGC	1 cut(s)	52
HinP1I	GCGC	1 cut(s)	52
HinfI	GANTC	1 cut(s)	167
HphI	GGTGA	1 cut(s)	109
Hpy188I	TCNGA	1 cut(s)	172
HpyCH4III	ACNGT	1 cut(s)	71
HpyCH4IV	ACGT	1 cut(s)	111
HpyCH4V	TGCA	1 cut(s)	81
HpyF10VI	GCNNNNNNNGC	1 cut(s)	60
HpyF3I	CTNAG	1 cut(s)	210
HpySE526I	ACGT	1 cut(s)	111
HspAI	GCGC	1 cut(s)	52
LpnPI	CCDG	3 cut(s)	25, 67, 183
LweI	GCATC	1 cut(s)	84
MaeII	ACGT	1 cut(s)	111
MnlI	CCTC	5 cut(s)	19, 107, 125, 129, 142
MspR9I	CCNGG	1 cut(s)	198
MvaI	CCWGG	1 cut(s)	198
MwoI	GCNNNNNNNGC	1 cut(s)	60
NlaIV	GGNNCC	1 cut(s)	30
NmeAIII	GCCGAG	2 cut(s)	43, 172
PfeI	GAWTC	1 cut(s)	167
Psp6I	CCWGG	1 cut(s)	196
PspGI	CCWGG	1 cut(s)	196
PspN4I	GGNNCC	1 cut(s)	30
PspPI	GGNCC	2 cut(s)	29, 84
PstI	CTGCAG	1 cut(s)	83
Sau96I	GGNCC	2 cut(s)	29, 84
ScrFI	CCNGG	1 cut(s)	198
SetI	ASST	3 cut(s)	13, 86, 114
SfaNI	GCATC	1 cut(s)	84
SfcI	CTRYAG	1 cut(s)	79
SgeI	CNNG	9 cut(s)	31, 52, 94, 122, 139, 145, 160, 205, 209
SinI	GGWCC	1 cut(s)	84
StyD4I	CCNGG	1 cut(s)	196
TaaI	ACNGT	1 cut(s)	71
TaiI	ACGT	1 cut(s)	114
TfiI	GAWTC	1 cut(s)	167
TspGWI	ACGGA	1 cut(s)	38
VpaK11BI	GGWCC	1 cut(s)	84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.