Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001693

Physical Location & Seq

Genomic Coordinates Forward (+)

25071189 .. 25075063

Gene Structure 3875 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00304400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGTCGATGCATTGCAAGATATGATTAGTGGTGAGGAGCTCTCTTTATATGGGTCAGCTCAAAACAATGCAGAATCAGCTCGGTTTGTTCACTTTTCGAAGAATGCATTTCCTGTTTATGTTTTAATCTGCTTGATTTGTTCCATACGGGGAATTTTTAATGAAAAAACAGTGAGAGGATCTCTGCCATTGCAGAACGAGATATTGTGTGCTGTTCGAGTCATGGAAATAATGGTTCGCTCTGTGTTCTTCGTCGGTCAATTCATCCGAAATGATTACGAGAGATCCAGGGAGAAGCCTTTTCCGTATGAAATTGTGGCAAATGGGCGTAATGGTATGGAAGCGATTGTTTTTGCCCGGATCTATATGCTTTTGATTCGGGTAAAACGATTGTTGGCACCGGTTCATAATTCTCTGTTGGCTTGCTTTCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0031123 GO:0031124 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043631 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

CPSF_A MMS1_N

Protein Analysis

144

Amino Acids

16.45

Weight (kDa)

8.78

Isoelectric Point (pI)

43.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001693)

Species	Orthologous Gene IDs
malus_domestica	MD15G1186700.v1.1
prunus_persica	Prupe.4G066100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0336331 RchiOBHm_Chr6g0290001 RchiOBHm_Chr7g0227531
rosa_laevigata	RLG00000002888 RLG00000019365
rosa_multiflora	Rmu_sc0000565.1_g000023 Rmu_sc0000776.1_g000047 Rmu_sc0002131.1_g000031 Rmu_sc0002701.1_g000052 Rmu_sc0003318.1_g000004 Rmu_sc0004517.1_g000008 Rmu_sc0004877.1_g000002 Rmu_sc0039095.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033520 Rroxscaffold_1G00040810 Rroxscaffold_1G00040820 Rroxscaffold_2G00107400 Rroxscaffold_2G00116610 Rroxscaffold_3G00224610 Rroxscaffold_4G00304390 Rroxscaffold_4G00304400 Rroxscaffold_4G00315830 Rroxscaffold_5G00346140 Rroxscaffold_5G00380560 Rroxscaffold_6G00389400 Rroxscaffold_7G00183550 Rroxscaffold_7G00205640
rosa_rugosa	Rorug06G0035900
rosa_samantha	Rh1AG116800 Rh2BG425100 Rh2CG611600 Rh2DG432400 Rh3CG233600 Rh4AG247700 Rh4BG058900 Rh4CG156400 Rh5AG268300 Rh5AG485100 Rh5BG239200 Rh5BG398300 Rh6CG191700 Rh7AG359900 Rh7AG382100 Rh7AG403900 Rh7CG188000 Rh7CG378300 Rh7DG395000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	397
AclWI	GGATC	3 cut(s)	187, 279, 368
AcsI	RAATTY	1 cut(s)	153
AgeI	ACCGGT	1 cut(s)	400
AjnI	CCWGG	1 cut(s)	287
AluBI	AGCT	3 cut(s)	40, 59, 80
AluI	AGCT	3 cut(s)	40, 59, 80
Alw21I	GWGCWC	1 cut(s)	42
AlwI	GGATC	3 cut(s)	187, 279, 368
ApoI	RAATTY	1 cut(s)	153
AsiGI	ACCGGT	1 cut(s)	400
AsuC2I	CCSGG	1 cut(s)	358
AsuHPI	GGTGA	1 cut(s)	44
AsuII	TTCGAA	1 cut(s)	98
BanI	GGYRCC	1 cut(s)	397
BanII	GRGCYC	1 cut(s)	42
Bbv12I	GWGCWC	1 cut(s)	42
BciT130I	CCWGG	1 cut(s)	289
BcnI	CCSGG	1 cut(s)	358
BfaI	CTAG	1 cut(s)	433
Bme1390I	CCNGG	2 cut(s)	289, 358
BmiI	GGNNCC	1 cut(s)	399
BmrFI	CCNGG	2 cut(s)	289, 358
BplI	GAGNNNNNCTC	4 cut(s)	26, 58, 166, 198
Bpu14I	TTCGAA	1 cut(s)	98
BpuMI	CCSGG	1 cut(s)	358
BsaJI	CCNNGG	1 cut(s)	288
BsaWI	WCCGGW	1 cut(s)	400
Bse118I	RCCGGY	1 cut(s)	400
Bse3DI	GCAATG	2 cut(s)	11, 188
BseBI	CCWGG	1 cut(s)	289
BseDI	CCNNGG	1 cut(s)	288
BseGI	GGATG	1 cut(s)	264
BseMI	GCAATG	2 cut(s)	11, 188
BseRI	GAGGAG	1 cut(s)	50
BshNI	GGYRCC	1 cut(s)	397
BshTI	ACCGGT	1 cut(s)	400
BsiHKAI	GWGCWC	1 cut(s)	42
BsiSI	CCGG	2 cut(s)	358, 401
BsmI	GAATGC	1 cut(s)	109
Bsp119I	TTCGAA	1 cut(s)	98
Bsp1286I	GDGCHC	1 cut(s)	42
Bsp143I	GATC	3 cut(s)	179, 284, 360
BspLI	GGNNCC	1 cut(s)	399
BspPI	GGATC	3 cut(s)	187, 279, 368
BspT104I	TTCGAA	1 cut(s)	98
BspT107I	GGYRCC	1 cut(s)	397
BsrDI	GCAATG	2 cut(s)	11, 188
BsrFI	RCCGGY	1 cut(s)	400
BssAI	RCCGGY	1 cut(s)	400
BssECI	CCNNGG	1 cut(s)	288
BssMI	GATC	3 cut(s)	179, 284, 360
Bst2UI	CCWGG	1 cut(s)	289
Bst4CI	ACNGT	1 cut(s)	172
BstBI	TTCGAA	1 cut(s)	98
BstC8I	GCNNGC	1 cut(s)	424
BstF5I	GGATG	1 cut(s)	264
BstKTI	GATC	3 cut(s)	182, 287, 363
BstMBI	GATC	3 cut(s)	179, 284, 360
BstMWI	GCNNNNNNNGC	1 cut(s)	77
BstNI	CCWGG	1 cut(s)	289
BstSCI	CCNGG	2 cut(s)	287, 356
BstX2I	RGATCY	3 cut(s)	179, 284, 360
BstYI	RGATCY	3 cut(s)	179, 284, 360
BtsCI	GGATG	1 cut(s)	264
BtsIMutI	CAGTG	1 cut(s)	177
Cac8I	GCNNGC	1 cut(s)	424
Cfr10I	RCCGGY	1 cut(s)	400
CspAI	ACCGGT	1 cut(s)	400
CviAII	CATG	1 cut(s)	223
CviJI	RGCY	5 cut(s)	40, 59, 80, 298, 422
CviKI_1	RGCY	5 cut(s)	40, 59, 80, 298, 422
DpnI	GATC	3 cut(s)	181, 286, 362
DpnII	GATC	3 cut(s)	179, 284, 360
Ecl136II	GAGCTC	1 cut(s)	40
Eco24I	GRGCYC	1 cut(s)	42
Eco53kI	GAGCTC	1 cut(s)	40
EcoICRI	GAGCTC	1 cut(s)	40
EcoRII	CCWGG	1 cut(s)	287
EcoT22I	ATGCAT	2 cut(s)	13, 109
EcoT38I	GRGCYC	1 cut(s)	42
FaeI	CATG	1 cut(s)	226
FatI	CATG	1 cut(s)	222
FokI	GGATG	1 cut(s)	251
FriOI	GRGCYC	1 cut(s)	42
FspBI	CTAG	1 cut(s)	433
HapII	CCGG	2 cut(s)	358, 401
Hin1II	CATG	1 cut(s)	226
HinfI	GANTC	3 cut(s)	74, 219, 376
HpaII	CCGG	2 cut(s)	358, 401
HphI	GGTGA	1 cut(s)	44
Hpy166II	GTNNAC	1 cut(s)	91
Hpy188I	TCNGA	1 cut(s)	269
Hpy8I	GTNNAC	1 cut(s)	91
Hpy99I	CGWCG	1 cut(s)	257
HpyCH4III	ACNGT	1 cut(s)	172
HpyCH4V	TGCA	5 cut(s)	11, 16, 71, 107, 193
HpyF10VI	GCNNNNNNNGC	1 cut(s)	77
Hsp92II	CATG	1 cut(s)	226
Kzo9I	GATC	3 cut(s)	179, 284, 360
LmnI	GCTCC	1 cut(s)	37
LpnPI	CCDG	5 cut(s)	126, 274, 301, 371, 414
MaeI	CTAG	1 cut(s)	433
MalI	GATC	3 cut(s)	181, 286, 362
MboI	GATC	3 cut(s)	179, 284, 360
MboII	GAAGA	2 cut(s)	112, 241
MflI	RGATCY	3 cut(s)	179, 284, 360
MhlI	GDGCHC	1 cut(s)	42
MluCI	AATT	4 cut(s)	153, 260, 312, 409
MlyI	GAGTC	1 cut(s)	228
MnlI	CCTC	2 cut(s)	28, 170
Mph1103I	ATGCAT	2 cut(s)	13, 109
MseI	TTAA	2 cut(s)	125, 159
MspI	CCGG	2 cut(s)	358, 401
MspR9I	CCNGG	2 cut(s)	289, 358
Mva1269I	GAATGC	1 cut(s)	109
MvaI	CCWGG	1 cut(s)	289
MwoI	GCNNNNNNNGC	1 cut(s)	77
NciI	CCSGG	1 cut(s)	358
NdeII	GATC	3 cut(s)	179, 284, 360
NlaIII	CATG	1 cut(s)	226
NlaIV	GGNNCC	1 cut(s)	399
NsiI	ATGCAT	2 cut(s)	13, 109
NspV	TTCGAA	1 cut(s)	98
PcsI	WCGNNNNNNNCGW	1 cut(s)	385
PctI	GAATGC	1 cut(s)	109
PfeI	GAWTC	2 cut(s)	74, 376
PinAI	ACCGGT	1 cut(s)	400
PleI	GAGTC	1 cut(s)	227
PpsI	GAGTC	1 cut(s)	227
Psp124BI	GAGCTC	1 cut(s)	42
Psp6I	CCWGG	1 cut(s)	287
PspGI	CCWGG	1 cut(s)	287
PspN4I	GGNNCC	1 cut(s)	399
PsuI	RGATCY	3 cut(s)	179, 284, 360
SacI	GAGCTC	1 cut(s)	42
SaqAI	TTAA	2 cut(s)	125, 159
Sau3AI	GATC	3 cut(s)	179, 284, 360
SchI	GAGTC	1 cut(s)	228
ScrFI	CCNGG	2 cut(s)	289, 358
SduI	GDGCHC	1 cut(s)	42
SetI	ASST	3 cut(s)	42, 61, 82
SfuI	TTCGAA	1 cut(s)	98
Sse9I	AATT	4 cut(s)	153, 260, 312, 409
SspMI	CTAG	1 cut(s)	433
SstI	GAGCTC	1 cut(s)	42
StyD4I	CCNGG	2 cut(s)	287, 356
TaaI	ACNGT	1 cut(s)	172
TaqI	TCGA	3 cut(s)	6, 98, 217
TaqII	GACCGA	1 cut(s)	245
TasI	AATT	4 cut(s)	153, 260, 312, 409
TfiI	GAWTC	2 cut(s)	74, 376
Tru1I	TTAA	2 cut(s)	125, 159
Tru9I	TTAA	2 cut(s)	125, 159
TscAI	CASTG	1 cut(s)	177
TspDTI	ATGAA	4 cut(s)	177, 253, 324, 395
TspGWI	ACGGA	1 cut(s)	294
TspRI	CASTG	1 cut(s)	177
XapI	RAATTY	1 cut(s)	153
XspI	CTAG	1 cut(s)	433
Zsp2I	ATGCAT	2 cut(s)	13, 109

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.