Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0001693

Physical Location & Seq

Genomic Coordinates Reverse (-)

2914163 .. 2916864

Gene Structure 2702 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00389400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGCAGCTCTCGCACCCTTCGAGGCTTGACATGTCTTGGCGGCATGTCTACTTGATGACGCAGTCTTTTCCTTCTTTGCCGGGAATAAACAAGGCCTGCTCCTTGTTCTTCAAAGGAGTAGCGGCAGCGGTCATCGACGAAGAACCGACATTCGGTAGGCCTTGTCGCGCCGATTCGAGGTCTTTCTCATTTGCTGTCGAGAGATTCTTTGTTAACGTTGGTCCTTTGAAGGACTTCTCCTATGGGCTAAGGATAAATGCAGATGCAAATGCTACCGGAATTGCTAAACAGAGCAATTATGAACTGGTAGCTGATGCACTTACTCCCATTGTTATATACAAGTTTTCCTTGATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0031123 GO:0031124 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043631 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

CPSF_A MMS1_N

Protein Analysis

118

Amino Acids

13.14

Weight (kDa)

8.66

Isoelectric Point (pI)

40.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001693)

Species	Orthologous Gene IDs
malus_domestica	MD15G1186700.v1.1
prunus_persica	Prupe.4G066100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0336331 RchiOBHm_Chr6g0290001 RchiOBHm_Chr7g0227531
rosa_laevigata	RLG00000002888 RLG00000019365
rosa_multiflora	Rmu_sc0000565.1_g000023 Rmu_sc0000776.1_g000047 Rmu_sc0002131.1_g000031 Rmu_sc0002701.1_g000052 Rmu_sc0003318.1_g000004 Rmu_sc0004517.1_g000008 Rmu_sc0004877.1_g000002 Rmu_sc0039095.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033520 Rroxscaffold_1G00040810 Rroxscaffold_1G00040820 Rroxscaffold_2G00107400 Rroxscaffold_2G00116610 Rroxscaffold_3G00224610 Rroxscaffold_4G00304390 Rroxscaffold_4G00304400 Rroxscaffold_4G00315830 Rroxscaffold_5G00346140 Rroxscaffold_5G00380560 Rroxscaffold_6G00389400 Rroxscaffold_7G00183550 Rroxscaffold_7G00205640
rosa_rugosa	Rorug06G0035900
rosa_samantha	Rh1AG116800 Rh2BG425100 Rh2CG611600 Rh2DG432400 Rh3CG233600 Rh4AG247700 Rh4BG058900 Rh4CG156400 Rh5AG268300 Rh5AG485100 Rh5BG239200 Rh5BG398300 Rh6CG191700 Rh7AG359900 Rh7AG382100 Rh7AG403900 Rh7CG188000 Rh7CG378300 Rh7DG395000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	48
AccII	CGCG	1 cut(s)	168
AciI	CCGC	3 cut(s)	40, 122, 128
AclI	AACGTT	1 cut(s)	216
AfiI	CCNNNNNNNGG	2 cut(s)	152, 177
AflIII	ACRYGT	1 cut(s)	30
AgsI	TTSAA	2 cut(s)	112, 229
AluBI	AGCT	2 cut(s)	7, 311
AluI	AGCT	2 cut(s)	7, 311
AoxI	GGCC	2 cut(s)	93, 158
ApeKI	GCWGC	2 cut(s)	4, 125
Asp700I	GAANNNNTTC	1 cut(s)	233
AspLEI	GCGC	1 cut(s)	170
AspS9I	GGNCC	1 cut(s)	221
AsuC2I	CCSGG	1 cut(s)	81
AvaII	GGWCC	1 cut(s)	221
BbvI	GCAGC	2 cut(s)	16, 137
BcnI	CCSGG	1 cut(s)	81
BisI	GCNGC	4 cut(s)	5, 41, 123, 126
BlsI	GCNGC	4 cut(s)	6, 42, 124, 127
Bme1390I	CCNGG	1 cut(s)	81
Bme18I	GGWCC	1 cut(s)	221
BmgT120I	GGNCC	1 cut(s)	221
BmrFI	CCNGG	1 cut(s)	81
BmsI	GCATC	2 cut(s)	253, 304
Bpu10I	CCTNAGC	1 cut(s)	248
BpuMI	CCSGG	1 cut(s)	81
BsaWI	WCCGGW	1 cut(s)	275
Bsc4I	CCNNNNNNNGG	2 cut(s)	152, 177
Bse1I	ACTGG	1 cut(s)	309
BseLI	CCNNNNNNNGG	2 cut(s)	152, 177
BseNI	ACTGG	1 cut(s)	309
BseXI	GCAGC	2 cut(s)	16, 137
Bsh1236I	CGCG	1 cut(s)	168
BshFI	GGCC	2 cut(s)	95, 160
BsiSI	CCGG	2 cut(s)	80, 276
BslI	CCNNNNNNNGG	2 cut(s)	152, 177
BsnI	GGCC	2 cut(s)	95, 160
BspACI	CCGC	3 cut(s)	40, 122, 128
BspANI	GGCC	2 cut(s)	95, 160
BspFNI	CGCG	1 cut(s)	168
BsrI	ACTGG	1 cut(s)	309
BstC8I	GCNNGC	1 cut(s)	97
BstDEI	CTNAG	1 cut(s)	248
BstFNI	CGCG	1 cut(s)	168
BstHHI	GCGC	1 cut(s)	170
BstMWI	GCNNNNNNNGC	1 cut(s)	10
BstNSI	RCATGY	2 cut(s)	34, 47
BstSCI	CCNGG	1 cut(s)	79
BstUI	CGCG	1 cut(s)	168
BstV1I	GCAGC	2 cut(s)	16, 137
BsuRI	GGCC	2 cut(s)	95, 160
Cac8I	GCNNGC	1 cut(s)	97
CfoI	GCGC	1 cut(s)	170
Cfr13I	GGNCC	1 cut(s)	221
CseI	GACGC	1 cut(s)	67
CviAII	CATG	2 cut(s)	31, 44
CviJI	RGCY	6 cut(s)	7, 25, 95, 160, 247, 311
CviKI_1	RGCY	6 cut(s)	7, 25, 95, 160, 247, 311
DdeI	CTNAG	1 cut(s)	248
Eco147I	AGGCCT	2 cut(s)	95, 160
Eco47I	GGWCC	1 cut(s)	221
FaeI	CATG	2 cut(s)	34, 47
FaiI	YATR	7 cut(s)	32, 45, 243, 300, 335, 337, 355
FalI	AAGNNNNNCTT	1 cut(s)	332
FatI	CATG	2 cut(s)	30, 43
FblI	GTMKAC	1 cut(s)	48
Fnu4HI	GCNGC	4 cut(s)	5, 41, 123, 126
Fsp4HI	GCNGC	4 cut(s)	5, 41, 123, 126
GlaI	GCGC	1 cut(s)	169
GluI	GCNGC	4 cut(s)	5, 41, 123, 126
HaeIII	GGCC	2 cut(s)	95, 160
HapII	CCGG	2 cut(s)	80, 276
HgaI	GACGC	1 cut(s)	67
HhaI	GCGC	1 cut(s)	170
Hin1II	CATG	2 cut(s)	34, 47
Hin6I	GCGC	1 cut(s)	168
HinP1I	GCGC	1 cut(s)	168
HincII	GTYRAC	1 cut(s)	214
HindII	GTYRAC	1 cut(s)	214
HinfI	GANTC	2 cut(s)	173, 204
HpaI	GTTAAC	1 cut(s)	214
HpaII	CCGG	2 cut(s)	80, 276
Hpy166II	GTNNAC	2 cut(s)	49, 214
Hpy188III	TCNNGA	1 cut(s)	199
Hpy8I	GTNNAC	2 cut(s)	49, 214
Hpy99I	CGWCG	1 cut(s)	140
HpyAV	CCTTC	3 cut(s)	27, 81, 223
HpyCH4IV	ACGT	1 cut(s)	216
HpyCH4V	TGCA	4 cut(s)	4, 260, 266, 317
HpyF10VI	GCNNNNNNNGC	1 cut(s)	10
HpyF3I	CTNAG	1 cut(s)	248
HpySE526I	ACGT	1 cut(s)	216
Hsp92II	CATG	2 cut(s)	34, 47
HspAI	GCGC	1 cut(s)	168
KspAI	GTTAAC	1 cut(s)	214
LmnI	GCTCC	1 cut(s)	104
LpnPI	CCDG	4 cut(s)	93, 109, 289, 290
Lsp1109I	GCAGC	2 cut(s)	16, 137
LweI	GCATC	2 cut(s)	253, 304
MaeII	ACGT	1 cut(s)	216
MboII	GAAGA	2 cut(s)	100, 152
MluCI	AATT	2 cut(s)	279, 295
MnlI	CCTC	2 cut(s)	15, 171
MroXI	GAANNNNTTC	1 cut(s)	233
MseI	TTAA	1 cut(s)	213
MspA1I	CMGCKG	1 cut(s)	128
MspI	CCGG	2 cut(s)	80, 276
MspR9I	CCNGG	1 cut(s)	81
MvnI	CGCG	1 cut(s)	168
MwoI	GCNNNNNNNGC	1 cut(s)	10
NciI	CCSGG	1 cut(s)	81
NlaIII	CATG	2 cut(s)	34, 47
NspI	RCATGY	2 cut(s)	34, 47
PceI	AGGCCT	2 cut(s)	95, 160
PciI	ACATGT	1 cut(s)	30
PcsI	WCGNNNNNNNCGW	1 cut(s)	17
PdmI	GAANNNNTTC	1 cut(s)	233
PfeI	GAWTC	2 cut(s)	173, 204
PflFI	GACNNNGTC	1 cut(s)	61
PkrI	GCNGC	4 cut(s)	6, 42, 124, 127
PscI	ACATGT	1 cut(s)	30
Psp1406I	AACGTT	1 cut(s)	216
PspPI	GGNCC	1 cut(s)	221
PsyI	GACNNNGTC	1 cut(s)	61
SaqAI	TTAA	1 cut(s)	213
SatI	GCNGC	4 cut(s)	5, 41, 123, 126
Sau96I	GGNCC	1 cut(s)	221
ScrFI	CCNGG	1 cut(s)	81
SetI	ASST	4 cut(s)	9, 182, 219, 313
SfaNI	GCATC	2 cut(s)	253, 304
SinI	GGWCC	1 cut(s)	221
Sse9I	AATT	2 cut(s)	279, 295
SseBI	AGGCCT	2 cut(s)	95, 160
SsiI	CCGC	3 cut(s)	40, 122, 128
StuI	AGGCCT	2 cut(s)	95, 160
StyD4I	CCNGG	1 cut(s)	79
TaiI	ACGT	1 cut(s)	219
TaqI	TCGA	4 cut(s)	20, 135, 176, 198
TasI	AATT	2 cut(s)	279, 295
TauI	GCSGC	2 cut(s)	43, 125
TfiI	GAWTC	2 cut(s)	173, 204
Tru1I	TTAA	1 cut(s)	213
Tru9I	TTAA	1 cut(s)	213
TseI	GCWGC	2 cut(s)	4, 125
TspDTI	ATGAA	1 cut(s)	315
Tth111I	GACNNNGTC	1 cut(s)	61
VpaK11BI	GGWCC	1 cut(s)	221
XceI	RCATGY	2 cut(s)	34, 47
XmiI	GTMKAC	1 cut(s)	48
XmnI	GAANNNNTTC	1 cut(s)	233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.