Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0001693

Physical Location & Seq

Genomic Coordinates Reverse (-)

22085129 .. 22094749

Gene Structure 9621 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG233600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGGGAGTCTTATTTGGGAACTTGAAGGCTGGTGTTTCTCTTGCTTGGGCCTTTGACAAGAGTGTTCCAGGCCTGGTTTTCTATTCTACCTGGCTATTCCGCGAGAATTTTATGGATGAGATGGAAATGGCAAAGGCTAGTGAGGAAGTTGTGGTGGAGAATTCTAATACATGTGAAGAATGTGCTGCTAGTTTCAAGAAACCTGCATATCTCAAGCAGCATATGCAAAACCATTCTCTTGAGGACAAGGAACTTGCTTCTATGATTGAGAGTGTTTCCAAGAAACAGCATTTTACCGCAAAATGGCTTGAACTGCCGAGACTGGATGAGATTTTAGTACAAGATGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000182 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0008097 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019843 GO:0022613 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0042254 GO:0042273 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0080084 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR zf-C2H2

Protein Analysis

116

Amino Acids

13.21

Weight (kDa)

5.02

Isoelectric Point (pI)

36.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001693)

Species	Orthologous Gene IDs
malus_domestica	MD15G1186700.v1.1
prunus_persica	Prupe.4G066100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0336331 RchiOBHm_Chr6g0290001 RchiOBHm_Chr7g0227531
rosa_laevigata	RLG00000002888 RLG00000019365
rosa_multiflora	Rmu_sc0000565.1_g000023 Rmu_sc0000776.1_g000047 Rmu_sc0002131.1_g000031 Rmu_sc0002701.1_g000052 Rmu_sc0003318.1_g000004 Rmu_sc0004517.1_g000008 Rmu_sc0004877.1_g000002 Rmu_sc0039095.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033520 Rroxscaffold_1G00040810 Rroxscaffold_1G00040820 Rroxscaffold_2G00107400 Rroxscaffold_2G00116610 Rroxscaffold_3G00224610 Rroxscaffold_4G00304390 Rroxscaffold_4G00304400 Rroxscaffold_4G00315830 Rroxscaffold_5G00346140 Rroxscaffold_5G00380560 Rroxscaffold_6G00389400 Rroxscaffold_7G00183550 Rroxscaffold_7G00205640
rosa_rugosa	Rorug06G0035900
rosa_samantha	Rh1AG116800 Rh2BG425100 Rh2CG611600 Rh2DG432400 Rh3CG233600 Rh4AG247700 Rh4BG058900 Rh4CG156400 Rh5AG268300 Rh5AG485100 Rh5BG239200 Rh5BG398300 Rh6CG191700 Rh7AG359900 Rh7AG382100 Rh7AG403900 Rh7CG188000 Rh7CG378300 Rh7DG395000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	211
AccII	CGCG	1 cut(s)	102
AciI	CCGC	2 cut(s)	100, 297
AcsI	RAATTY	2 cut(s)	106, 160
AfaI	GTAC	1 cut(s)	339
AfiI	CCNNNNNNNGG	1 cut(s)	303
AflIII	ACRYGT	1 cut(s)	170
AgsI	TTSAA	3 cut(s)	25, 196, 311
AjnI	CCWGG	3 cut(s)	67, 72, 89
Alw26I	GTCTC	1 cut(s)	313
AoxI	GGCC	2 cut(s)	48, 70
ApeKI	GCWGC	2 cut(s)	185, 217
ApoI	RAATTY	2 cut(s)	106, 160
AspS9I	GGNCC	1 cut(s)	48
BbvI	GCAGC	2 cut(s)	172, 229
BccI	CCATC	2 cut(s)	115, 338
BciT130I	CCWGG	3 cut(s)	69, 74, 91
BcoDI	GTCTC	1 cut(s)	313
BfaI	CTAG	2 cut(s)	138, 189
BfuAI	ACCTGC	1 cut(s)	211
BisI	GCNGC	2 cut(s)	186, 218
BlsI	GCNGC	2 cut(s)	187, 219
Bme1390I	CCNGG	3 cut(s)	69, 74, 91
BmgT120I	GGNCC	1 cut(s)	48
BmrFI	CCNGG	3 cut(s)	69, 74, 91
BpuEI	CTTGAG	2 cut(s)	197, 260
Bsc4I	CCNNNNNNNGG	1 cut(s)	303
Bse1I	ACTGG	1 cut(s)	327
BseBI	CCWGG	3 cut(s)	69, 74, 91
BseGI	GGATG	2 cut(s)	121, 331
BseLI	CCNNNNNNNGG	1 cut(s)	303
BseNI	ACTGG	1 cut(s)	327
BseXI	GCAGC	2 cut(s)	172, 229
Bsh1236I	CGCG	1 cut(s)	102
BshFI	GGCC	2 cut(s)	50, 72
BslI	CCNNNNNNNGG	1 cut(s)	303
BsmAI	GTCTC	1 cut(s)	313
BsnI	GGCC	2 cut(s)	50, 72
BspACI	CCGC	2 cut(s)	100, 297
BspANI	GGCC	2 cut(s)	50, 72
BspFNI	CGCG	1 cut(s)	102
BspMI	ACCTGC	1 cut(s)	211
BsrI	ACTGG	1 cut(s)	327
Bst2UI	CCWGG	3 cut(s)	69, 74, 91
BstAPI	GCANNNNNTGC	1 cut(s)	223
BstF5I	GGATG	2 cut(s)	121, 331
BstFNI	CGCG	1 cut(s)	102
BstMAI	GTCTC	1 cut(s)	313
BstMWI	GCNNNNNNNGC	2 cut(s)	223, 313
BstNI	CCWGG	3 cut(s)	69, 74, 91
BstNSI	RCATGY	1 cut(s)	174
BstSCI	CCNGG	3 cut(s)	67, 72, 89
BstUI	CGCG	1 cut(s)	102
BstV1I	GCAGC	2 cut(s)	172, 229
BsuRI	GGCC	2 cut(s)	50, 72
BtsCI	GGATG	2 cut(s)	121, 331
BveI	ACCTGC	1 cut(s)	211
Cfr13I	GGNCC	1 cut(s)	48
Csp6I	GTAC	1 cut(s)	338
CviAII	CATG	1 cut(s)	171
CviJI	RGCY	6 cut(s)	29, 50, 72, 94, 137, 307
CviKI_1	RGCY	6 cut(s)	29, 50, 72, 94, 137, 307
CviQI	GTAC	1 cut(s)	338
Eco147I	AGGCCT	1 cut(s)	72
EcoRI	GAATTC	1 cut(s)	160
EcoRII	CCWGG	3 cut(s)	67, 72, 89
FaeI	CATG	1 cut(s)	174
FaiI	YATR	6 cut(s)	113, 172, 208, 222, 224, 263
FatI	CATG	1 cut(s)	170
FauNDI	CATATG	1 cut(s)	222
Fnu4HI	GCNGC	2 cut(s)	186, 218
FokI	GGATG	2 cut(s)	128, 338
Fsp4HI	GCNGC	2 cut(s)	186, 218
FspBI	CTAG	2 cut(s)	138, 189
GluI	GCNGC	2 cut(s)	186, 218
HaeIII	GGCC	2 cut(s)	50, 72
Hin1II	CATG	1 cut(s)	174
HinfI	GANTC	1 cut(s)	6
Hpy188III	TCNNGA	2 cut(s)	196, 239
HpyAV	CCTTC	1 cut(s)	19
HpyCH4V	TGCA	2 cut(s)	206, 226
HpyF10VI	GCNNNNNNNGC	2 cut(s)	223, 313
Hsp92II	CATG	1 cut(s)	174
LpnPI	CCDG	9 cut(s)	15, 54, 59, 76, 81, 86, 103, 216, 308
Lsp1109I	GCAGC	2 cut(s)	172, 229
MaeI	CTAG	2 cut(s)	138, 189
MboII	GAAGA	1 cut(s)	188
MluCI	AATT	2 cut(s)	106, 160
MlyI	GAGTC	1 cut(s)	15
MnlI	CCTC	2 cut(s)	136, 235
MspR9I	CCNGG	3 cut(s)	69, 74, 91
MvaI	CCWGG	3 cut(s)	69, 74, 91
MvnI	CGCG	1 cut(s)	102
MwoI	GCNNNNNNNGC	2 cut(s)	223, 313
NdeI	CATATG	1 cut(s)	222
NlaIII	CATG	1 cut(s)	174
NmeAIII	GCCGAG	1 cut(s)	342
NspI	RCATGY	1 cut(s)	174
PceI	AGGCCT	1 cut(s)	72
PciI	ACATGT	1 cut(s)	170
PkrI	GCNGC	2 cut(s)	187, 219
PleI	GAGTC	1 cut(s)	14
PpsI	GAGTC	1 cut(s)	14
PscI	ACATGT	1 cut(s)	170
Psp6I	CCWGG	3 cut(s)	67, 72, 89
PspGI	CCWGG	3 cut(s)	67, 72, 89
PspPI	GGNCC	1 cut(s)	48
RsaI	GTAC	1 cut(s)	339
RsaNI	GTAC	1 cut(s)	338
SatI	GCNGC	2 cut(s)	186, 218
Sau96I	GGNCC	1 cut(s)	48
SchI	GAGTC	1 cut(s)	15
ScrFI	CCNGG	3 cut(s)	69, 74, 91
SetI	ASST	2 cut(s)	92, 205
SmlI	CTYRAG	2 cut(s)	212, 239
SmoI	CTYRAG	2 cut(s)	212, 239
Sse9I	AATT	2 cut(s)	106, 160
SseBI	AGGCCT	1 cut(s)	72
SsiI	CCGC	2 cut(s)	100, 297
SspMI	CTAG	2 cut(s)	138, 189
StuI	AGGCCT	1 cut(s)	72
StyD4I	CCNGG	3 cut(s)	67, 72, 89
TasI	AATT	2 cut(s)	106, 160
TatI	WGTACW	1 cut(s)	337
TseI	GCWGC	2 cut(s)	185, 217
XapI	RAATTY	2 cut(s)	106, 160
XceI	RCATGY	1 cut(s)	174
XspI	CTAG	2 cut(s)	138, 189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.