Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001693

Physical Location & Seq

Genomic Coordinates Reverse (-)

43856896 .. 43860616

Gene Structure 3721 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00116610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGAACACGATGCACAAGTGTAGAGGTCTACGCATCTTATCCGCTCGCCTTCTCCTCACCACCGACATCTCATTTGTCACCGTTCTCTACACTCCCGTCAAGGATGAGATGGAAATGGCAAAGCTGGTAGAAGTTGTGGTGGAGAAGTCTAATACATGTGAAGAATGTGGTGCTAGTTTCAAGAAACCCGCATATCTCAAGAAGCGTATGCAAAGCCATTCTCCCGAGGTACACTCGGCTCAGGAGCATGGCGATCTTATCAATCTTCATGACCCGGTTCCGCCTTTCAAAACCATTGTCATTCAAGACAGCAGAAAGGGGACAAGCAAACCGGAAAAGTCCCCACTTAAGAAAAGAAAGGAAAGGAATGAATCTGAAAACAAGAGTGAAGCATCCATTCAAGTTGAGATTGAAGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000781 GO:0000784 GO:0000808 GO:0003674 GO:0003676 GO:0003677 GO:0003688 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005656 GO:0005664 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006267 GO:0006270 GO:0006725 GO:0006807 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009743 GO:0009744 GO:0009791 GO:0009987 GO:0010033 GO:0016043 GO:0022402 GO:0022607 GO:0022622 GO:0031261 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0032993 GO:0033260 GO:0034285 GO:0034622 GO:0034641 GO:0034645 GO:0036387 GO:0036388 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044786 GO:0046483 GO:0048364 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0050896 GO:0065003 GO:0065004 GO:0070013 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090696 GO:0097159 GO:0098687 GO:0099402 GO:1901360 GO:1901363 GO:1901576 GO:1901700 GO:1902299 GO:1990837

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

ORC3_N

Protein Analysis

139

Amino Acids

15.78

Weight (kDa)

8.75

Isoelectric Point (pI)

53.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001693)

Species	Orthologous Gene IDs
malus_domestica	MD15G1186700.v1.1
prunus_persica	Prupe.4G066100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0336331 RchiOBHm_Chr6g0290001 RchiOBHm_Chr7g0227531
rosa_laevigata	RLG00000002888 RLG00000019365
rosa_multiflora	Rmu_sc0000565.1_g000023 Rmu_sc0000776.1_g000047 Rmu_sc0002131.1_g000031 Rmu_sc0002701.1_g000052 Rmu_sc0003318.1_g000004 Rmu_sc0004517.1_g000008 Rmu_sc0004877.1_g000002 Rmu_sc0039095.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033520 Rroxscaffold_1G00040810 Rroxscaffold_1G00040820 Rroxscaffold_2G00107400 Rroxscaffold_2G00116610 Rroxscaffold_3G00224610 Rroxscaffold_4G00304390 Rroxscaffold_4G00304400 Rroxscaffold_4G00315830 Rroxscaffold_5G00346140 Rroxscaffold_5G00380560 Rroxscaffold_6G00389400 Rroxscaffold_7G00183550 Rroxscaffold_7G00205640
rosa_rugosa	Rorug06G0035900
rosa_samantha	Rh1AG116800 Rh2BG425100 Rh2CG611600 Rh2DG432400 Rh3CG233600 Rh4AG247700 Rh4BG058900 Rh4CG156400 Rh5AG268300 Rh5AG485100 Rh5BG239200 Rh5BG398300 Rh6CG191700 Rh7AG359900 Rh7AG382100 Rh7AG403900 Rh7CG188000 Rh7CG378300 Rh7DG395000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	44
AccI	GTMKAC	1 cut(s)	28
AciI	CCGC	3 cut(s)	42, 189, 281
AfaI	GTAC	1 cut(s)	231
AflII	CTTAAG	1 cut(s)	347
AflIII	ACRYGT	1 cut(s)	155
AgsI	TTSAA	5 cut(s)	181, 289, 305, 401, 413
AluBI	AGCT	1 cut(s)	124
AluI	AGCT	1 cut(s)	124
Ama87I	CYCGRG	1 cut(s)	224
ArsI	GACNNNNNNTTYG	4 cut(s)	56, 88, 282, 314
AsuC2I	CCSGG	1 cut(s)	275
AsuHPI	GGTGA	2 cut(s)	49, 70
AvaI	CYCGRG	1 cut(s)	224
BccI	CCATC	1 cut(s)	103
BcnI	CCSGG	1 cut(s)	275
BfaI	CTAG	1 cut(s)	174
BfrI	CTTAAG	1 cut(s)	347
Bme1390I	CCNGG	1 cut(s)	275
BmeT110I	CYCGRG	1 cut(s)	224
BmiI	GGNNCC	1 cut(s)	279
BmrFI	CCNGG	1 cut(s)	275
BmsI	GCATC	2 cut(s)	42, 401
BplI	GAGNNNNNCTC	2 cut(s)	218, 250
Bpu10I	CCTNAGC	1 cut(s)	240
BpuEI	CTTGAG	1 cut(s)	182
BpuMI	CCSGG	1 cut(s)	275
BsaJI	CCNNGG	1 cut(s)	225
BsaWI	WCCGGW	1 cut(s)	331
BseDI	CCNNGG	1 cut(s)	225
BseGI	GGATG	2 cut(s)	109, 392
BseMII	CTCAG	1 cut(s)	254
BseRI	GAGGAG	1 cut(s)	44
BsiHKCI	CYCGRG	1 cut(s)	224
BsiSI	CCGG	2 cut(s)	275, 332
BslFI	GGGAC	2 cut(s)	325, 334
BsmFI	GGGAC	2 cut(s)	325, 334
BsoBI	CYCGRG	1 cut(s)	224
Bsp143I	GATC	1 cut(s)	253
BspACI	CCGC	3 cut(s)	42, 189, 281
BspCNI	CTCAG	1 cut(s)	253
BspHI	TCATGA	1 cut(s)	268
BspLI	GGNNCC	1 cut(s)	279
BspTI	CTTAAG	1 cut(s)	347
BsrBI	CCGCTC	1 cut(s)	44
BssECI	CCNNGG	1 cut(s)	225
BssMI	GATC	1 cut(s)	253
Bst4CI	ACNGT	1 cut(s)	82
BstAFI	CTTAAG	1 cut(s)	347
BstC8I	GCNNGC	1 cut(s)	46
BstDEI	CTNAG	1 cut(s)	240
BstF5I	GGATG	2 cut(s)	109, 392
BstKTI	GATC	1 cut(s)	256
BstMBI	GATC	1 cut(s)	253
BstNSI	RCATGY	1 cut(s)	159
BstSCI	CCNGG	1 cut(s)	273
BtsCI	GGATG	2 cut(s)	109, 392
Cac8I	GCNNGC	1 cut(s)	46
CciI	TCATGA	1 cut(s)	268
Csp6I	GTAC	1 cut(s)	230
CviAII	CATG	3 cut(s)	156, 248, 269
CviJI	RGCY	3 cut(s)	124, 216, 239
CviKI_1	RGCY	3 cut(s)	124, 216, 239
CviQI	GTAC	1 cut(s)	230
DdeI	CTNAG	1 cut(s)	240
DpnI	GATC	1 cut(s)	255
DpnII	GATC	1 cut(s)	253
EciI	GGCGGA	1 cut(s)	270
Eco88I	CYCGRG	1 cut(s)	224
FaeI	CATG	3 cut(s)	159, 251, 272
FaiI	YATR	5 cut(s)	157, 193, 209, 249, 270
FaqI	GGGAC	2 cut(s)	325, 334
FatI	CATG	3 cut(s)	155, 247, 268
FauI	CCCGC	1 cut(s)	196
FblI	GTMKAC	1 cut(s)	28
FokI	GGATG	2 cut(s)	116, 379
FspBI	CTAG	1 cut(s)	174
HapII	CCGG	2 cut(s)	275, 332
Hin1II	CATG	3 cut(s)	159, 251, 272
HinfI	GANTC	1 cut(s)	371
HpaII	CCGG	2 cut(s)	275, 332
HphI	GGTGA	2 cut(s)	49, 70
Hpy166II	GTNNAC	2 cut(s)	29, 232
Hpy188I	TCNGA	1 cut(s)	376
Hpy188III	TCNNGA	6 cut(s)	181, 199, 224, 242, 269, 305
Hpy8I	GTNNAC	2 cut(s)	29, 232
HpyAV	CCTTC	1 cut(s)	59
HpyCH4III	ACNGT	1 cut(s)	82
HpyCH4V	TGCA	2 cut(s)	13, 211
HpyF3I	CTNAG	1 cut(s)	240
Hsp92II	CATG	3 cut(s)	159, 251, 272
Kzo9I	GATC	1 cut(s)	253
LmnI	GCTCC	1 cut(s)	244
LpnPI	CCDG	4 cut(s)	110, 227, 288, 345
LweI	GCATC	2 cut(s)	42, 401
MaeI	CTAG	1 cut(s)	174
MaeIII	GTNAC	1 cut(s)	76
MalI	GATC	1 cut(s)	255
MbiI	CCGCTC	1 cut(s)	44
MboI	GATC	1 cut(s)	253
MboII	GAAGA	2 cut(s)	173, 257
MnlI	CCTC	3 cut(s)	17, 65, 220
MseI	TTAA	1 cut(s)	348
MspCI	CTTAAG	1 cut(s)	347
MspI	CCGG	2 cut(s)	275, 332
MspR9I	CCNGG	1 cut(s)	275
NciI	CCSGG	1 cut(s)	275
NdeII	GATC	1 cut(s)	253
NlaIII	CATG	3 cut(s)	159, 251, 272
NlaIV	GGNNCC	1 cut(s)	279
NmeAIII	GCCGAG	1 cut(s)	215
NmuCI	GTSAC	1 cut(s)	76
NspI	RCATGY	1 cut(s)	159
PagI	TCATGA	1 cut(s)	268
PciI	ACATGT	1 cut(s)	155
PfeI	GAWTC	1 cut(s)	371
PscI	ACATGT	1 cut(s)	155
PspN4I	GGNNCC	1 cut(s)	279
RsaI	GTAC	1 cut(s)	231
RsaNI	GTAC	1 cut(s)	230
SaqAI	TTAA	1 cut(s)	348
Sau3AI	GATC	1 cut(s)	253
ScrFI	CCNGG	1 cut(s)	275
SetI	ASST	3 cut(s)	28, 126, 231
SfaNI	GCATC	2 cut(s)	42, 401
SmlI	CTYRAG	2 cut(s)	197, 347
SmoI	CTYRAG	2 cut(s)	197, 347
SsiI	CCGC	3 cut(s)	42, 189, 281
SspMI	CTAG	1 cut(s)	174
StyD4I	CCNGG	1 cut(s)	273
TaaI	ACNGT	1 cut(s)	82
TfiI	GAWTC	1 cut(s)	371
Tru1I	TTAA	1 cut(s)	348
Tru9I	TTAA	1 cut(s)	348
TseFI	GTSAC	1 cut(s)	76
Tsp45I	GTSAC	1 cut(s)	76
TspDTI	ATGAA	3 cut(s)	17, 257, 384
Vha464I	CTTAAG	1 cut(s)	347
XceI	RCATGY	1 cut(s)	159
XmiI	GTMKAC	1 cut(s)	28
XspI	CTAG	1 cut(s)	174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.