Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0001693

Physical Location & Seq

Genomic Coordinates Reverse (-)

56051157 .. 56065824

Gene Structure 14668 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG247700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGGGTTCAGCCTTGGTAACAAAGGGATCAAATGAATATAATTCAAGGAAGAAAGACAAGCTTGGTGAACCAATAGCAGCTCCACGACGGCTTGTTTCTTCTATGTGGAAAGATCAGCTATTGCTTCCAATGATGAAGCCATCCAGTAGTCCAGTACTGAATGGTTACCAGAAGAGTTGCTGGTACGAGAAGGAAATCGAAGAAACCTTAGGATGGAGCTTTGCTTTTAATATGCCTGCAGCTGGGGTCAGGTTACATCGTATGATGCTTGAAGATTTGCCGAATGGTATTATGGATGAGGATGAGATGGAAATGGCAAAGGCTGGTGGGGAAGTTGTGGTGGAGAAGTCTAATACATGTGAAGAATGTGGTGCTAGTTTCAAGAAACCTGCGTATCTCAAGAAGCGTATGCAAAGCCATTCTCCTGAGTATTCCCATCCAGATAACATGTCTTCTGCAGAAAAGCTGAAAATTGAGCTTGGCAAAGTTAGAGATGAATTTAAAATGTCAGAGTCAGATTGTGGTTCTGCACGAGTTCAAGGGCACACCAGTCCTTTTCGTGGAGGGCTGTTTGGTGTGCTAAAGTACTGCTTAAGTGCCATTGCTATGTATAATGCACAGAGAGGCAGGAAAGGCAGGAGTTCAGTTCTGTGGAAGAATTTAGTGAGTTCTGTAGTTACCTGGGAGCTTATGGATGGTATTTACATTGGTAGAGAAAATATTTTGGAACTCGGTCCCTCCTGTTTCATAACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S15

Protein Analysis

251

Amino Acids

28.08

Weight (kDa)

8.43

Isoelectric Point (pI)

51.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001693)

Species	Orthologous Gene IDs
malus_domestica	MD15G1186700.v1.1
prunus_persica	Prupe.4G066100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0336331 RchiOBHm_Chr6g0290001 RchiOBHm_Chr7g0227531
rosa_laevigata	RLG00000002888 RLG00000019365
rosa_multiflora	Rmu_sc0000565.1_g000023 Rmu_sc0000776.1_g000047 Rmu_sc0002131.1_g000031 Rmu_sc0002701.1_g000052 Rmu_sc0003318.1_g000004 Rmu_sc0004517.1_g000008 Rmu_sc0004877.1_g000002 Rmu_sc0039095.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033520 Rroxscaffold_1G00040810 Rroxscaffold_1G00040820 Rroxscaffold_2G00107400 Rroxscaffold_2G00116610 Rroxscaffold_3G00224610 Rroxscaffold_4G00304390 Rroxscaffold_4G00304400 Rroxscaffold_4G00315830 Rroxscaffold_5G00346140 Rroxscaffold_5G00380560 Rroxscaffold_6G00389400 Rroxscaffold_7G00183550 Rroxscaffold_7G00205640
rosa_rugosa	Rorug06G0035900
rosa_samantha	Rh1AG116800 Rh2BG425100 Rh2CG611600 Rh2DG432400 Rh3CG233600 Rh4AG247700 Rh4BG058900 Rh4CG156400 Rh5AG268300 Rh5AG485100 Rh5BG239200 Rh5BG398300 Rh6CG191700 Rh7AG359900 Rh7AG382100 Rh7AG403900 Rh7CG188000 Rh7CG378300 Rh7DG395000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	397
AclWI	GGATC	1 cut(s)	34
AcsI	RAATTY	2 cut(s)	497, 658
AfaI	GTAC	3 cut(s)	156, 185, 587
AfiI	CCNNNNNNNGG	3 cut(s)	213, 242, 560
AflII	CTTAAG	1 cut(s)	592
AflIII	ACRYGT	2 cut(s)	356, 447
AgsI	TTSAA	4 cut(s)	45, 272, 382, 539
AjnI	CCWGG	1 cut(s)	680
AluBI	AGCT	8 cut(s)	61, 80, 118, 219, 242, 466, 478, 688
AluI	AGCT	8 cut(s)	61, 80, 118, 219, 242, 466, 478, 688
AlwI	GGATC	1 cut(s)	34
ApeKI	GCWGC	2 cut(s)	77, 239
ApoI	RAATTY	2 cut(s)	497, 658
AspS9I	GGNCC	1 cut(s)	734
AsuHPI	GGTGA	1 cut(s)	77
AvaII	GGWCC	1 cut(s)	734
AxyI	CCTNAGG	1 cut(s)	208
BaeGI	GKGCMC	1 cut(s)	546
BaeI	ACNNNNGTAYC	2 cut(s)	377, 410
BauI	CACGAG	1 cut(s)	531
BbsI	GAAGAC	1 cut(s)	444
BbvI	GCAGC	2 cut(s)	89, 251
BccI	CCATC	5 cut(s)	148, 207, 301, 444, 689
BceAI	ACGGC	1 cut(s)	104
BciT130I	CCWGG	1 cut(s)	682
BfaI	CTAG	2 cut(s)	375, 754
BfmI	CTRYAG	3 cut(s)	237, 456, 672
BfrI	CTTAAG	1 cut(s)	592
BfuAI	ACCTGC	1 cut(s)	397
BisI	GCNGC	2 cut(s)	78, 240
BlsI	GCNGC	2 cut(s)	79, 241
BmcAI	AGTACT	2 cut(s)	156, 587
Bme1390I	CCNGG	1 cut(s)	682
Bme18I	GGWCC	1 cut(s)	734
BmgT120I	GGNCC	1 cut(s)	734
BmiI	GGNNCC	1 cut(s)	736
BmrFI	CCNGG	1 cut(s)	682
BmsI	GCATC	1 cut(s)	255
BpiI	GAAGAC	1 cut(s)	444
BpuEI	CTTGAG	1 cut(s)	383
BsaJI	CCNNGG	2 cut(s)	12, 681
Bsc4I	CCNNNNNNNGG	3 cut(s)	213, 242, 560
Bse1I	ACTGG	3 cut(s)	144, 152, 549
Bse21I	CCTNAGG	1 cut(s)	208
Bse3DI	GCAATG	1 cut(s)	600
BseBI	CCWGG	1 cut(s)	682
BseDI	CCNNGG	2 cut(s)	12, 681
BseGI	GGATG	6 cut(s)	140, 218, 301, 307, 436, 700
BseLI	CCNNNNNNNGG	3 cut(s)	213, 242, 560
BseMI	GCAATG	1 cut(s)	600
BseMII	CTCAG	1 cut(s)	417
BseNI	ACTGG	3 cut(s)	144, 152, 549
BseSI	GKGCMC	1 cut(s)	546
BseXI	GCAGC	2 cut(s)	89, 251
BseYI	CCCAGC	1 cut(s)	242
BsgI	GTGCAG	1 cut(s)	513
BslFI	GGGAC	1 cut(s)	720
BslI	CCNNNNNNNGG	3 cut(s)	213, 242, 560
BsmFI	GGGAC	1 cut(s)	720
Bsp1286I	GDGCHC	1 cut(s)	546
Bsp143I	GATC	2 cut(s)	26, 112
BspCNI	CTCAG	1 cut(s)	418
BspLI	GGNNCC	1 cut(s)	736
BspMAI	CTGCAG	2 cut(s)	241, 460
BspMI	ACCTGC	1 cut(s)	397
BspPI	GGATC	1 cut(s)	34
BspTI	CTTAAG	1 cut(s)	592
BsrDI	GCAATG	1 cut(s)	600
BsrI	ACTGG	3 cut(s)	144, 152, 549
BssECI	CCNNGG	2 cut(s)	12, 681
BssMI	GATC	2 cut(s)	26, 112
BssSI	CACGAG	1 cut(s)	531
BssT1I	CCWWGG	1 cut(s)	12
Bst2BI	CACGAG	1 cut(s)	531
Bst2UI	CCWGG	1 cut(s)	682
Bst6I	CTCTTC	1 cut(s)	167
BstAFI	CTTAAG	1 cut(s)	592
BstC8I	GCNNGC	1 cut(s)	237
BstDEI	CTNAG	2 cut(s)	208, 426
BstEII	GGTNACC	1 cut(s)	164
BstF5I	GGATG	6 cut(s)	140, 218, 301, 307, 436, 700
BstKTI	GATC	2 cut(s)	29, 115
BstMBI	GATC	2 cut(s)	26, 112
BstMWI	GCNNNNNNNGC	1 cut(s)	633
BstNI	CCWGG	1 cut(s)	682
BstNSI	RCATGY	2 cut(s)	360, 451
BstPI	GGTNACC	1 cut(s)	164
BstSCI	CCNGG	1 cut(s)	680
BstSFI	CTRYAG	3 cut(s)	237, 456, 672
BstSLI	GKGCMC	1 cut(s)	546
BstV1I	GCAGC	2 cut(s)	89, 251
BstV2I	GAAGAC	1 cut(s)	444
Bsu36I	CCTNAGG	1 cut(s)	208
BtsCI	GGATG	6 cut(s)	140, 218, 301, 307, 436, 700
BveI	ACCTGC	1 cut(s)	397
Cac8I	GCNNGC	1 cut(s)	237
Cfr13I	GGNCC	1 cut(s)	734
Csp6I	GTAC	3 cut(s)	155, 184, 586
CviAII	CATG	2 cut(s)	357, 448
CviQI	GTAC	3 cut(s)	155, 184, 586
DdeI	CTNAG	2 cut(s)	208, 426
DpnI	GATC	2 cut(s)	28, 114
DpnII	GATC	2 cut(s)	26, 112
DraI	TTTAAA	1 cut(s)	502
Eam1104I	CTCTTC	1 cut(s)	167
EarI	CTCTTC	1 cut(s)	167
Eco130I	CCWWGG	1 cut(s)	12
Eco47I	GGWCC	1 cut(s)	734
Eco81I	CCTNAGG	1 cut(s)	208
Eco91I	GGTNACC	1 cut(s)	164
EcoO65I	GGTNACC	1 cut(s)	164
EcoRII	CCWGG	1 cut(s)	680
EcoT14I	CCWWGG	1 cut(s)	12
ErhI	CCWWGG	1 cut(s)	12
FaeI	CATG	2 cut(s)	360, 451
FalI	AAGNNNNNCTT	4 cut(s)	45, 77, 575, 607
FaqI	GGGAC	1 cut(s)	720
FatI	CATG	2 cut(s)	356, 447
Fnu4HI	GCNGC	2 cut(s)	78, 240
FokI	GGATG	6 cut(s)	127, 225, 308, 314, 423, 707
Fsp4HI	GCNGC	2 cut(s)	78, 240
FspBI	CTAG	2 cut(s)	375, 754
GluI	GCNGC	2 cut(s)	78, 240
GsaI	CCCAGC	1 cut(s)	246
Hin1II	CATG	2 cut(s)	360, 451
HindIII	AAGCTT	1 cut(s)	59
HinfI	GANTC	1 cut(s)	512
HphI	GGTGA	1 cut(s)	77
Hpy166II	GTNNAC	1 cut(s)	68
Hpy188I	TCNGA	2 cut(s)	511, 517
Hpy188III	TCNNGA	4 cut(s)	382, 400, 425, 440
Hpy8I	GTNNAC	1 cut(s)	68
Hpy99I	CGWCG	1 cut(s)	90
HpyAV	CCTTC	1 cut(s)	184
HpyCH4V	TGCA	5 cut(s)	239, 412, 458, 530, 617
HpyF10VI	GCNNNNNNNGC	1 cut(s)	633
HpyF3I	CTNAG	2 cut(s)	208, 426
Hsp92II	CATG	2 cut(s)	360, 451
Kzo9I	GATC	2 cut(s)	26, 112
LmnI	GCTCC	3 cut(s)	85, 216, 685
Lsp1109I	GCAGC	2 cut(s)	89, 251
LweI	GCATC	1 cut(s)	255
MaeI	CTAG	2 cut(s)	375, 754
MaeIII	GTNAC	4 cut(s)	16, 164, 252, 676
MalI	GATC	2 cut(s)	28, 114
MboI	GATC	2 cut(s)	26, 112
MboII	GAAGA	8 cut(s)	61, 90, 184, 212, 284, 374, 444, 667
MhlI	GDGCHC	1 cut(s)	546
MluCI	AATT	4 cut(s)	40, 471, 497, 658
MlyI	GAGTC	1 cut(s)	521
MnlI	CCTC	4 cut(s)	292, 557, 617, 748
MseI	TTAA	3 cut(s)	228, 501, 593
MslI	CAYNNNNRTG	1 cut(s)	605
MspA1I	CMGCKG	1 cut(s)	242
MspCI	CTTAAG	1 cut(s)	592
MspR9I	CCNGG	1 cut(s)	682
MvaI	CCWGG	1 cut(s)	682
MwoI	GCNNNNNNNGC	1 cut(s)	633
NdeII	GATC	2 cut(s)	26, 112
NlaIII	CATG	2 cut(s)	360, 451
NlaIV	GGNNCC	1 cut(s)	736
NspI	RCATGY	2 cut(s)	360, 451
PciI	ACATGT	2 cut(s)	356, 447
PkrI	GCNGC	2 cut(s)	79, 241
PleI	GAGTC	1 cut(s)	520
PpsI	GAGTC	1 cut(s)	520
PscI	ACATGT	2 cut(s)	356, 447
Psp6I	CCWGG	1 cut(s)	680
PspEI	GGTNACC	1 cut(s)	164
PspFI	CCCAGC	1 cut(s)	242
PspGI	CCWGG	1 cut(s)	680
PspN4I	GGNNCC	1 cut(s)	736
PspPI	GGNCC	1 cut(s)	734
PstI	CTGCAG	2 cut(s)	241, 460
PvuII	CAGCTG	1 cut(s)	242
RsaI	GTAC	3 cut(s)	156, 185, 587
RsaNI	GTAC	3 cut(s)	155, 184, 586
RseI	CAYNNNNRTG	1 cut(s)	605
SaqAI	TTAA	3 cut(s)	228, 501, 593
SatI	GCNGC	2 cut(s)	78, 240
Sau3AI	GATC	2 cut(s)	26, 112
Sau96I	GGNCC	1 cut(s)	734
ScaI	AGTACT	2 cut(s)	156, 587
SchI	GAGTC	1 cut(s)	521
ScrFI	CCNGG	1 cut(s)	682
SduI	GDGCHC	1 cut(s)	546
SfaNI	GCATC	1 cut(s)	255
SfcI	CTRYAG	3 cut(s)	237, 456, 672
SinI	GGWCC	1 cut(s)	734
SmiMI	CAYNNNNRTG	1 cut(s)	605
SmlI	CTYRAG	2 cut(s)	398, 592
SmoI	CTYRAG	2 cut(s)	398, 592
Sse9I	AATT	4 cut(s)	40, 471, 497, 658
SspI	AATATT	1 cut(s)	721
SspMI	CTAG	2 cut(s)	375, 754
StyD4I	CCNGG	1 cut(s)	680
StyI	CCWWGG	1 cut(s)	12
TaqI	TCGA	1 cut(s)	198
TaqII	GACCGA	1 cut(s)	722
TasI	AATT	4 cut(s)	40, 471, 497, 658
TatI	WGTACW	2 cut(s)	154, 585
Tru1I	TTAA	3 cut(s)	228, 501, 593
Tru9I	TTAA	3 cut(s)	228, 501, 593
TseI	GCWGC	2 cut(s)	77, 239
TspDTI	ATGAA	4 cut(s)	48, 149, 510, 736
Vha464I	CTTAAG	1 cut(s)	592
VpaK11BI	GGWCC	1 cut(s)	734
XapI	RAATTY	2 cut(s)	497, 658
XceI	RCATGY	2 cut(s)	360, 451
XspI	CTAG	2 cut(s)	375, 754
ZrmI	AGTACT	2 cut(s)	156, 587

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.