Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0001693

Physical Location & Seq

Genomic Coordinates Reverse (-)

31527549 .. 31535340

Gene Structure 7792 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG191700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGCGATTACATGCGGCGGAAGCGCATATGCTGGTGCATATGCGCGTCCGTCCATTTTATCAGTGTAAAATAGAGGGCCCAGATGCAGTACCAATTTTAAGGTACTTGACTGATAAGGCTGCTGCACTTTTGCTTTACTCTTTATTGCAAGGAAATGCTGACTTTCTGGAGTATGTCTTGGTGCGAACTTATTTGGATACACTGATTCTTGAAGCATCAAATGATGAAGAGGATGAGATGGAAATGGCAAAGGCTGGTGGGAAAGTTGTGGTGGAGAAGTCTAATACATGTGAAGAATGTGGTGCTAGTTTTAAGAAACCTGCGTATCTCAAGAAGCATATGCAAAGCCATTCTCCTGAGAAGGAAAAGTATCTGATTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000182 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0008097 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019843 GO:0022613 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0042254 GO:0042273 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0080084 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR zf-C2H2

Protein Analysis

127

Amino Acids

14.42

Weight (kDa)

5.94

Isoelectric Point (pI)

35.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001693)

Species	Orthologous Gene IDs
malus_domestica	MD15G1186700.v1.1
prunus_persica	Prupe.4G066100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0336331 RchiOBHm_Chr6g0290001 RchiOBHm_Chr7g0227531
rosa_laevigata	RLG00000002888 RLG00000019365
rosa_multiflora	Rmu_sc0000565.1_g000023 Rmu_sc0000776.1_g000047 Rmu_sc0002131.1_g000031 Rmu_sc0002701.1_g000052 Rmu_sc0003318.1_g000004 Rmu_sc0004517.1_g000008 Rmu_sc0004877.1_g000002 Rmu_sc0039095.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033520 Rroxscaffold_1G00040810 Rroxscaffold_1G00040820 Rroxscaffold_2G00107400 Rroxscaffold_2G00116610 Rroxscaffold_3G00224610 Rroxscaffold_4G00304390 Rroxscaffold_4G00304400 Rroxscaffold_4G00315830 Rroxscaffold_5G00346140 Rroxscaffold_5G00380560 Rroxscaffold_6G00389400 Rroxscaffold_7G00183550 Rroxscaffold_7G00205640
rosa_rugosa	Rorug06G0035900
rosa_samantha	Rh1AG116800 Rh2BG425100 Rh2CG611600 Rh2DG432400 Rh3CG233600 Rh4AG247700 Rh4BG058900 Rh4CG156400 Rh5AG268300 Rh5AG485100 Rh5BG239200 Rh5BG398300 Rh6CG191700 Rh7AG359900 Rh7AG382100 Rh7AG403900 Rh7CG188000 Rh7CG378300 Rh7DG395000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	328
AccII	CGCG	1 cut(s)	45
AciI	CCGC	2 cut(s)	14, 17
AfaI	GTAC	2 cut(s)	90, 104
AflIII	ACRYGT	1 cut(s)	287
AgsI	TTSAA	1 cut(s)	212
AoxI	GGCC	1 cut(s)	76
ApaI	GGGCCC	1 cut(s)	80
ApeKI	GCWGC	2 cut(s)	119, 122
AspLEI	GCGC	2 cut(s)	25, 45
AspS9I	GGNCC	2 cut(s)	76, 77
BaeGI	GKGCMC	1 cut(s)	80
BaeI	ACNNNNGTAYC	2 cut(s)	308, 341
BanII	GRGCYC	1 cut(s)	80
BbvI	GCAGC	2 cut(s)	106, 109
BccI	CCATC	1 cut(s)	232
BciVI	GTATCC	1 cut(s)	190
BfaI	CTAG	1 cut(s)	306
BfuAI	ACCTGC	1 cut(s)	328
BfuI	GTATCC	1 cut(s)	190
BisI	GCNGC	3 cut(s)	15, 120, 123
BlsI	GCNGC	3 cut(s)	16, 121, 124
BmgT120I	GGNCC	2 cut(s)	76, 77
BmiI	GGNNCC	1 cut(s)	78
BmsI	GCATC	2 cut(s)	73, 224
BpmI	CTGGAG	1 cut(s)	188
BpuEI	CTTGAG	1 cut(s)	314
BseGI	GGATG	1 cut(s)	238
BseMII	CTCAG	1 cut(s)	348
BseSI	GKGCMC	1 cut(s)	80
BseXI	GCAGC	2 cut(s)	106, 109
BsgI	GTGCAG	1 cut(s)	108
Bsh1236I	CGCG	1 cut(s)	45
BshFI	GGCC	1 cut(s)	78
BsnI	GGCC	1 cut(s)	78
Bsp120I	GGGCCC	1 cut(s)	76
Bsp1286I	GDGCHC	1 cut(s)	80
BspACI	CCGC	2 cut(s)	14, 17
BspANI	GGCC	1 cut(s)	78
BspCNI	CTCAG	1 cut(s)	349
BspFNI	CGCG	1 cut(s)	45
BspLI	GGNNCC	1 cut(s)	78
BspMI	ACCTGC	1 cut(s)	328
Bst6I	CTCTTC	1 cut(s)	222
BstDEI	CTNAG	1 cut(s)	357
BstF5I	GGATG	1 cut(s)	238
BstFNI	CGCG	1 cut(s)	45
BstHHI	GCGC	2 cut(s)	25, 45
BstMWI	GCNNNNNNNGC	1 cut(s)	20
BstNSI	RCATGY	2 cut(s)	14, 291
BstSLI	GKGCMC	1 cut(s)	80
BstUI	CGCG	1 cut(s)	45
BstV1I	GCAGC	2 cut(s)	106, 109
BsuI	GTATCC	1 cut(s)	190
BsuRI	GGCC	1 cut(s)	78
BtsCI	GGATG	1 cut(s)	238
BtsIMutI	CAGTG	2 cut(s)	68, 200
BveI	ACCTGC	1 cut(s)	328
CfoI	GCGC	2 cut(s)	25, 45
Cfr13I	GGNCC	2 cut(s)	76, 77
CseI	GACGC	1 cut(s)	34
Csp6I	GTAC	2 cut(s)	89, 103
CviAII	CATG	2 cut(s)	11, 288
CviJI	RGCY	4 cut(s)	78, 119, 254, 348
CviKI_1	RGCY	4 cut(s)	78, 119, 254, 348
CviQI	GTAC	2 cut(s)	89, 103
DdeI	CTNAG	1 cut(s)	357
Eam1104I	CTCTTC	1 cut(s)	222
EarI	CTCTTC	1 cut(s)	222
EciI	GGCGGA	1 cut(s)	32
Eco24I	GRGCYC	1 cut(s)	80
EcoO109I	RGGNCCY	1 cut(s)	76
EcoT38I	GRGCYC	1 cut(s)	80
FaeI	CATG	2 cut(s)	14, 291
FaiI	YATR	9 cut(s)	12, 27, 29, 39, 41, 174, 289, 339, 341
FatI	CATG	2 cut(s)	10, 287
FauNDI	CATATG	3 cut(s)	27, 39, 339
Fnu4HI	GCNGC	3 cut(s)	15, 120, 123
FokI	GGATG	1 cut(s)	245
FriOI	GRGCYC	1 cut(s)	80
Fsp4HI	GCNGC	3 cut(s)	15, 120, 123
FspBI	CTAG	1 cut(s)	306
GlaI	GCGC	2 cut(s)	24, 44
GluI	GCNGC	3 cut(s)	15, 120, 123
GsuI	CTGGAG	1 cut(s)	188
HaeIII	GGCC	1 cut(s)	78
HgaI	GACGC	1 cut(s)	34
HhaI	GCGC	2 cut(s)	25, 45
Hin1II	CATG	2 cut(s)	14, 291
Hin6I	GCGC	2 cut(s)	23, 43
HinP1I	GCGC	2 cut(s)	23, 43
HinfI	GANTC	1 cut(s)	205
Hpy188I	TCNGA	1 cut(s)	375
Hpy188III	TCNNGA	4 cut(s)	167, 209, 331, 356
HpyAV	CCTTC	1 cut(s)	355
HpyCH4V	TGCA	5 cut(s)	37, 86, 125, 148, 343
HpyF10VI	GCNNNNNNNGC	1 cut(s)	20
HpyF3I	CTNAG	1 cut(s)	357
Hsp92II	CATG	2 cut(s)	14, 291
HspAI	GCGC	2 cut(s)	23, 43
LpnPI	CCDG	6 cut(s)	17, 93, 152, 240, 333, 369
Lsp1109I	GCAGC	2 cut(s)	106, 109
LweI	GCATC	2 cut(s)	73, 224
MaeI	CTAG	1 cut(s)	306
MboII	GAAGA	2 cut(s)	239, 305
MhlI	GDGCHC	1 cut(s)	80
MluCI	AATT	1 cut(s)	93
MnlI	CCTC	2 cut(s)	67, 223
MseI	TTAA	2 cut(s)	98, 312
MvnI	CGCG	1 cut(s)	45
MwoI	GCNNNNNNNGC	1 cut(s)	20
NdeI	CATATG	3 cut(s)	27, 39, 339
NlaIII	CATG	2 cut(s)	14, 291
NlaIV	GGNNCC	1 cut(s)	78
NspI	RCATGY	2 cut(s)	14, 291
PciI	ACATGT	1 cut(s)	287
PfeI	GAWTC	1 cut(s)	205
PkrI	GCNGC	3 cut(s)	16, 121, 124
PscI	ACATGT	1 cut(s)	287
PspN4I	GGNNCC	1 cut(s)	78
PspOMI	GGGCCC	1 cut(s)	76
PspPI	GGNCC	2 cut(s)	76, 77
RsaI	GTAC	2 cut(s)	90, 104
RsaNI	GTAC	2 cut(s)	89, 103
SaqAI	TTAA	2 cut(s)	98, 312
SatI	GCNGC	3 cut(s)	15, 120, 123
Sau96I	GGNCC	2 cut(s)	76, 77
SduI	GDGCHC	1 cut(s)	80
SetI	ASST	2 cut(s)	104, 322
SfaNI	GCATC	2 cut(s)	73, 224
SmlI	CTYRAG	1 cut(s)	329
SmoI	CTYRAG	1 cut(s)	329
Sse9I	AATT	1 cut(s)	93
SsiI	CCGC	2 cut(s)	14, 17
SspMI	CTAG	1 cut(s)	306
TasI	AATT	1 cut(s)	93
TauI	GCSGC	1 cut(s)	17
TfiI	GAWTC	1 cut(s)	205
Tru1I	TTAA	2 cut(s)	98, 312
Tru9I	TTAA	2 cut(s)	98, 312
TscAI	CASTG	2 cut(s)	68, 207
TseI	GCWGC	2 cut(s)	119, 122
TspDTI	ATGAA	1 cut(s)	240
TspGWI	ACGGA	1 cut(s)	38
TspRI	CASTG	2 cut(s)	68, 207
XceI	RCATGY	2 cut(s)	14, 291
XspI	CTAG	1 cut(s)	306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.