Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001693

Physical Location & Seq

Genomic Coordinates Forward (+)

31315180 .. 31317812

Gene Structure 2633 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00107400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGGGGAGGATCGGCCGTGCATCGCCGGAAAAGTGGTTTTCCGGCGGGTCGGGTTTTCATTTCGGGGGAGGGCTTCGATCCAAACATGGGGGCAGCGGCGGTGCAAGGGAGGACCATAGGCAGCATGGGCGGCTTGGTCCGAGCTCGAGGAGGGCCGGTCGGCGGCGGAGGTGGCCGGAGGAAGAAGAAAAAGTCGGGTCGGGTCAAGAGGAATCCGCCGGGTCCGAATCTGTTGGGAGACAGTTTGCTTGTGCAGTTACTAGTGGAGTAGGGGCCTCGATGTTGTCAGCTGGTTTGAAGGATGAGGCGATTGCGAATGTCATCATCGATGCATTGCAAGATATGATTAGTGGTGAGGAGCTCTCTTTATATGGGTCAGCTCAAAACAATGCAGAATCAGCTCAGAGGTCTTTCTCATTTGCTGTCGGGGATTCTTTGATTAGCGTTGGTCCTTTGAAGGACTTCTCATATGGGCTAAGGATAAATGCAGATGCAAATTCTACTAGAATTGCTAAACATAGCAATTATGAACTGGTAGCTGATGAACTTACTCCCCCTTGTTATATACAAATTTTCCTTGATATGAATATGGGCTATATGCTTAATCTTAAATGGTTTCGGTGTGCTGTTCGGGTCATGGAAAGAATGGTTCGCTATGTTCTTCTTCAGTCAATTCATCCAGAAATGATTACTGAGGTTGCACTACCAAGTTGCAAGGGAATTTGGACCGTTTACCATAAGAATGCATGTGGTCATAATGCTGAGTCTTCGATGATGAGTGTCATGCTTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0031123 GO:0031124 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043631 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

CPSF_A MMS1_N

Protein Analysis

264

Amino Acids

28.85

Weight (kDa)

7.71

Isoelectric Point (pI)

56.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001693)

Species	Orthologous Gene IDs
malus_domestica	MD15G1186700.v1.1
prunus_persica	Prupe.4G066100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0336331 RchiOBHm_Chr6g0290001 RchiOBHm_Chr7g0227531
rosa_laevigata	RLG00000002888 RLG00000019365
rosa_multiflora	Rmu_sc0000565.1_g000023 Rmu_sc0000776.1_g000047 Rmu_sc0002131.1_g000031 Rmu_sc0002701.1_g000052 Rmu_sc0003318.1_g000004 Rmu_sc0004517.1_g000008 Rmu_sc0004877.1_g000002 Rmu_sc0039095.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033520 Rroxscaffold_1G00040810 Rroxscaffold_1G00040820 Rroxscaffold_2G00107400 Rroxscaffold_2G00116610 Rroxscaffold_3G00224610 Rroxscaffold_4G00304390 Rroxscaffold_4G00304400 Rroxscaffold_4G00315830 Rroxscaffold_5G00346140 Rroxscaffold_5G00380560 Rroxscaffold_6G00389400 Rroxscaffold_7G00183550 Rroxscaffold_7G00205640
rosa_rugosa	Rorug06G0035900
rosa_samantha	Rh1AG116800 Rh2BG425100 Rh2CG611600 Rh2DG432400 Rh3CG233600 Rh4AG247700 Rh4BG058900 Rh4CG156400 Rh5AG268300 Rh5AG485100 Rh5BG239200 Rh5BG398300 Rh6CG191700 Rh7AG359900 Rh7AG382100 Rh7AG403900 Rh7CG188000 Rh7CG378300 Rh7DG395000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	7 cut(s)	45, 96, 99, 130, 163, 166, 216
AclWI	GGATC	2 cut(s)	17, 72
AcoI	YGGCCR	2 cut(s)	13, 173
AcsI	RAATTY	3 cut(s)	496, 570, 720
AcuI	CTGAAG	1 cut(s)	650
AfiI	CCNNNNNNNGG	2 cut(s)	87, 162
AgsI	TTSAA	2 cut(s)	298, 457
AhlI	ACTAGT	1 cut(s)	260
AluBI	AGCT	6 cut(s)	144, 290, 361, 380, 401, 539
AluI	AGCT	6 cut(s)	144, 290, 361, 380, 401, 539
Alw21I	GWGCWC	2 cut(s)	146, 363
Alw26I	GTCTC	1 cut(s)	232
AlwI	GGATC	2 cut(s)	17, 72
Ama87I	CYCGRG	1 cut(s)	145
AoxI	GGCC	4 cut(s)	13, 153, 173, 273
ApeKI	GCWGC	2 cut(s)	93, 121
ApoI	RAATTY	3 cut(s)	496, 570, 720
Asp700I	GAANNNNTTC	1 cut(s)	461
AspS9I	GGNCC	7 cut(s)	112, 137, 153, 222, 273, 449, 726
AsuC2I	CCSGG	1 cut(s)	220
AsuHPI	GGTGA	1 cut(s)	365
AvaI	CYCGRG	1 cut(s)	145
AvaII	GGWCC	5 cut(s)	112, 137, 222, 449, 726
BanII	GRGCYC	2 cut(s)	146, 363
BbsI	GAAGAC	1 cut(s)	759
Bbv12I	GWGCWC	2 cut(s)	146, 363
BbvI	GCAGC	2 cut(s)	105, 133
BcnI	CCSGG	1 cut(s)	220
BcoDI	GTCTC	1 cut(s)	232
BcuI	ACTAGT	1 cut(s)	260
BfaI	CTAG	2 cut(s)	261, 504
BisI	GCNGC	5 cut(s)	94, 97, 122, 131, 164
BlsI	GCNGC	5 cut(s)	95, 98, 123, 132, 165
Bme1390I	CCNGG	1 cut(s)	220
Bme18I	GGWCC	5 cut(s)	112, 137, 222, 449, 726
BmeT110I	CYCGRG	1 cut(s)	145
BmgT120I	GGNCC	7 cut(s)	112, 137, 153, 222, 273, 449, 726
BmiI	GGNNCC	2 cut(s)	223, 274
BmrFI	CCNGG	1 cut(s)	220
BmsI	GCATC	3 cut(s)	29, 319, 481
BpiI	GAAGAC	1 cut(s)	759
BplI	GAGNNNNNCTC	2 cut(s)	347, 379
Bpu10I	CCTNAGC	1 cut(s)	476
BpuMI	CCSGG	1 cut(s)	220
Bsa29I	ATCGAT	1 cut(s)	327
BsaXI	ACNNNNNCTCC	2 cut(s)	142, 172
Bsc4I	CCNNNNNNNGG	2 cut(s)	87, 162
Bse118I	RCCGGY	1 cut(s)	155
Bse1I	ACTGG	1 cut(s)	537
Bse3DI	GCAATG	1 cut(s)	332
BseCI	ATCGAT	1 cut(s)	327
BseGI	GGATG	2 cut(s)	307, 676
BseLI	CCNNNNNNNGG	2 cut(s)	87, 162
BseMI	GCAATG	1 cut(s)	332
BseMII	CTCAG	3 cut(s)	416, 684, 753
BseNI	ACTGG	1 cut(s)	537
BseRI	GAGGAG	2 cut(s)	163, 371
BseX3I	CGGCCG	1 cut(s)	13
BseXI	GCAGC	2 cut(s)	105, 133
BsgI	GTGCAG	1 cut(s)	273
Bsh1285I	CGRYCG	2 cut(s)	16, 160
BshFI	GGCC	4 cut(s)	15, 155, 175, 275
BshVI	ATCGAT	1 cut(s)	327
BsiEI	CGRYCG	2 cut(s)	16, 160
BsiHKAI	GWGCWC	2 cut(s)	146, 363
BsiHKCI	CYCGRG	1 cut(s)	145
BsiSI	CCGG	5 cut(s)	26, 42, 156, 176, 219
BslI	CCNNNNNNNGG	2 cut(s)	87, 162
BsmAI	GTCTC	1 cut(s)	232
BsmI	GAATGC	1 cut(s)	748
BsnI	GGCC	4 cut(s)	15, 155, 175, 275
BsoBI	CYCGRG	1 cut(s)	145
Bsp1286I	GDGCHC	2 cut(s)	146, 363
Bsp143I	GATC	2 cut(s)	9, 77
BspACI	CCGC	7 cut(s)	45, 96, 99, 130, 163, 166, 216
BspANI	GGCC	4 cut(s)	15, 155, 175, 275
BspCNI	CTCAG	3 cut(s)	415, 685, 754
BspDI	ATCGAT	1 cut(s)	327
BspLI	GGNNCC	2 cut(s)	223, 274
BspPI	GGATC	2 cut(s)	17, 72
BsrDI	GCAATG	1 cut(s)	332
BsrFI	RCCGGY	1 cut(s)	155
BsrI	ACTGG	1 cut(s)	537
BssAI	RCCGGY	1 cut(s)	155
BssMI	GATC	2 cut(s)	9, 77
Bst4CI	ACNGT	2 cut(s)	243, 730
BstDEI	CTNAG	4 cut(s)	402, 476, 693, 762
BstF5I	GGATG	2 cut(s)	307, 676
BstKTI	GATC	2 cut(s)	12, 80
BstMAI	GTCTC	1 cut(s)	232
BstMBI	GATC	2 cut(s)	9, 77
BstMCI	CGRYCG	2 cut(s)	16, 160
BstMWI	GCNNNNNNNGC	4 cut(s)	127, 130, 172, 398
BstNSI	RCATGY	1 cut(s)	750
BstSCI	CCNGG	1 cut(s)	218
BstV1I	GCAGC	2 cut(s)	105, 133
BstV2I	GAAGAC	1 cut(s)	759
BstZI	CGGCCG	1 cut(s)	13
Bsu15I	ATCGAT	1 cut(s)	327
BsuRI	GGCC	4 cut(s)	15, 155, 175, 275
BsuTUI	ATCGAT	1 cut(s)	327
BtgZI	GCGATG	1 cut(s)	6
BtsCI	GGATG	2 cut(s)	307, 676
Cfr10I	RCCGGY	1 cut(s)	155
Cfr13I	GGNCC	7 cut(s)	112, 137, 153, 222, 273, 449, 726
ClaI	ATCGAT	1 cut(s)	327
CviAII	CATG	5 cut(s)	86, 125, 637, 747, 784
DdeI	CTNAG	4 cut(s)	402, 476, 693, 762
DpnI	GATC	2 cut(s)	11, 79
DpnII	GATC	2 cut(s)	9, 77
EaeI	YGGCCR	2 cut(s)	13, 173
EagI	CGGCCG	1 cut(s)	13
EciI	GGCGGA	2 cut(s)	181, 205
Ecl136II	GAGCTC	2 cut(s)	144, 361
EclXI	CGGCCG	1 cut(s)	13
Eco24I	GRGCYC	2 cut(s)	146, 363
Eco47I	GGWCC	5 cut(s)	112, 137, 222, 449, 726
Eco52I	CGGCCG	1 cut(s)	13
Eco53kI	GAGCTC	2 cut(s)	144, 361
Eco57I	CTGAAG	1 cut(s)	650
Eco88I	CYCGRG	1 cut(s)	145
EcoICRI	GAGCTC	2 cut(s)	144, 361
EcoO109I	RGGNCCY	1 cut(s)	273
EcoT22I	ATGCAT	2 cut(s)	334, 748
EcoT38I	GRGCYC	2 cut(s)	146, 363
FaeI	CATG	5 cut(s)	89, 128, 640, 750, 787
FatI	CATG	5 cut(s)	85, 124, 636, 746, 783
FauI	CCCGC	1 cut(s)	38
FauNDI	CATATG	1 cut(s)	469
Fnu4HI	GCNGC	5 cut(s)	94, 97, 122, 131, 164
FokI	GGATG	2 cut(s)	314, 663
FriOI	GRGCYC	2 cut(s)	146, 363
Fsp4HI	GCNGC	5 cut(s)	94, 97, 122, 131, 164
FspBI	CTAG	2 cut(s)	261, 504
GluI	GCNGC	5 cut(s)	94, 97, 122, 131, 164
HaeIII	GGCC	4 cut(s)	15, 155, 175, 275
HapII	CCGG	5 cut(s)	26, 42, 156, 176, 219
Hin1II	CATG	5 cut(s)	89, 128, 640, 750, 787
HinfI	GANTC	5 cut(s)	212, 227, 395, 431, 764
HpaII	CCGG	5 cut(s)	26, 42, 156, 176, 219
HphI	GGTGA	1 cut(s)	365
Hpy166II	GTNNAC	1 cut(s)	733
Hpy188I	TCNGA	3 cut(s)	141, 226, 405
Hpy188III	TCNNGA	2 cut(s)	206, 680
Hpy8I	GTNNAC	1 cut(s)	733
HpyAV	CCTTC	2 cut(s)	292, 451
HpyCH4III	ACNGT	2 cut(s)	243, 730
HpyF10VI	GCNNNNNNNGC	4 cut(s)	127, 130, 172, 398
HpyF3I	CTNAG	4 cut(s)	402, 476, 693, 762
Hsp92II	CATG	5 cut(s)	89, 128, 640, 750, 787
Kzo9I	GATC	2 cut(s)	9, 77
LmnI	GCTCC	1 cut(s)	358
LpnPI	CCDG	8 cut(s)	39, 55, 169, 189, 232, 276, 518, 693
Lsp1109I	GCAGC	2 cut(s)	105, 133
LweI	GCATC	3 cut(s)	29, 319, 481
MaeI	CTAG	2 cut(s)	261, 504
MaeIII	GTNAC	1 cut(s)	256
MalI	GATC	2 cut(s)	11, 79
MboI	GATC	2 cut(s)	9, 77
MboII	GAAGA	5 cut(s)	194, 197, 653, 656, 759
MhlI	GDGCHC	2 cut(s)	146, 363
MluCI	AATT	6 cut(s)	496, 507, 523, 570, 672, 720
MlyI	GAGTC	1 cut(s)	773
Mph1103I	ATGCAT	2 cut(s)	334, 748
MroXI	GAANNNNTTC	1 cut(s)	461
MseI	TTAA	3 cut(s)	603, 609, 793
MslI	CAYNNNNRTG	1 cut(s)	741
MspA1I	CMGCKG	2 cut(s)	96, 290
MspI	CCGG	5 cut(s)	26, 42, 156, 176, 219
MspR9I	CCNGG	1 cut(s)	220
Mva1269I	GAATGC	1 cut(s)	748
MwoI	GCNNNNNNNGC	4 cut(s)	127, 130, 172, 398
NciI	CCSGG	1 cut(s)	220
NdeI	CATATG	1 cut(s)	469
NdeII	GATC	2 cut(s)	9, 77
NlaIII	CATG	5 cut(s)	89, 128, 640, 750, 787
NlaIV	GGNNCC	2 cut(s)	223, 274
NsiI	ATGCAT	2 cut(s)	334, 748
NspI	RCATGY	1 cut(s)	750
PaeR7I	CTCGAG	1 cut(s)	145
PctI	GAATGC	1 cut(s)	748
PdmI	GAANNNNTTC	1 cut(s)	461
PfeI	GAWTC	4 cut(s)	212, 227, 395, 431
PkrI	GCNGC	5 cut(s)	95, 98, 123, 132, 165
PleI	GAGTC	1 cut(s)	772
PpsI	GAGTC	1 cut(s)	772
Psp124BI	GAGCTC	2 cut(s)	146, 363
PspN4I	GGNNCC	2 cut(s)	223, 274
PspPI	GGNCC	7 cut(s)	112, 137, 153, 222, 273, 449, 726
PspXI	VCTCGAGB	1 cut(s)	145
PvuII	CAGCTG	1 cut(s)	290
RseI	CAYNNNNRTG	1 cut(s)	741
SacI	GAGCTC	2 cut(s)	146, 363
SaqAI	TTAA	3 cut(s)	603, 609, 793
SatI	GCNGC	5 cut(s)	94, 97, 122, 131, 164
Sau3AI	GATC	2 cut(s)	9, 77
Sau96I	GGNCC	7 cut(s)	112, 137, 153, 222, 273, 449, 726
SchI	GAGTC	1 cut(s)	773
ScrFI	CCNGG	1 cut(s)	220
SduI	GDGCHC	2 cut(s)	146, 363
SetI	ASST	9 cut(s)	146, 173, 292, 363, 382, 403, 410, 541, 699
SfaNI	GCATC	3 cut(s)	29, 319, 481
Sfr274I	CTCGAG	1 cut(s)	145
SinI	GGWCC	5 cut(s)	112, 137, 222, 449, 726
SlaI	CTCGAG	1 cut(s)	145
SmiMI	CAYNNNNRTG	1 cut(s)	741
SmlI	CTYRAG	1 cut(s)	145
SmoI	CTYRAG	1 cut(s)	145
SpeI	ACTAGT	1 cut(s)	260
Sse9I	AATT	6 cut(s)	496, 507, 523, 570, 672, 720
SsiI	CCGC	7 cut(s)	45, 96, 99, 130, 163, 166, 216
SspMI	CTAG	2 cut(s)	261, 504
SstI	GAGCTC	2 cut(s)	146, 363
StyD4I	CCNGG	1 cut(s)	218
TaaI	ACNGT	2 cut(s)	243, 730
TaqI	TCGA	5 cut(s)	76, 146, 278, 327, 770
TasI	AATT	6 cut(s)	496, 507, 523, 570, 672, 720
TauI	GCSGC	3 cut(s)	99, 133, 166
TfiI	GAWTC	4 cut(s)	212, 227, 395, 431
Tru1I	TTAA	3 cut(s)	603, 609, 793
Tru9I	TTAA	3 cut(s)	603, 609, 793
TseI	GCWGC	2 cut(s)	93, 121
TspDTI	ATGAA	5 cut(s)	47, 543, 558, 599, 665
VpaK11BI	GGWCC	5 cut(s)	112, 137, 222, 449, 726
XapI	RAATTY	3 cut(s)	496, 570, 720
XceI	RCATGY	1 cut(s)	750
XcmI	CCANNNNNNNNNTGG	1 cut(s)	122
XhoI	CTCGAG	1 cut(s)	145
XmnI	GAANNNNTTC	1 cut(s)	461
XspI	CTAG	2 cut(s)	261, 504
Zsp2I	ATGCAT	2 cut(s)	334, 748

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.