Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0001693

Physical Location & Seq

Genomic Coordinates Reverse (-)

16543678 .. 16553382

Gene Structure 9705 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG188000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGAACACGATGCACTGCGTAGAGGTCTACGACATCTTATCCGCTCAGCTTCTCCTCACCACCGACATCTCCTTCGTCACCGTTCTCTACACTCCCGTCAAGCATGAGATGGAAATGGCAAAGGCTGGTGGGGAAGTTGTGGTGGAGAAGTCTAATACATGTGAAGAATGTGGTGCTAGTTTCAAGAAACCTGCGTATCTCAAGAAGCATATGCAAAGCCATTCTCCTGAGAGTGGAGAGAAGCCGATAACTGGTTCGGACTTGGGATGCTTTGCTGTAACGGACCTGTTCCACCATGGCTCTTTAACAAGTTTACTCTCTCTGTCTCTCAAAATCAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000182 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0008097 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019843 GO:0022613 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0042254 GO:0042273 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0080084 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR zf-C2H2

Protein Analysis

113

Amino Acids

12.39

Weight (kDa)

6.03

Isoelectric Point (pI)

27.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2	PF00096	53 - 74	9.4e-06	Zinc finger, C2H2 type

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001693)

Species	Orthologous Gene IDs
malus_domestica	MD15G1186700.v1.1
prunus_persica	Prupe.4G066100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0336331 RchiOBHm_Chr6g0290001 RchiOBHm_Chr7g0227531
rosa_laevigata	RLG00000002888 RLG00000019365
rosa_multiflora	Rmu_sc0000565.1_g000023 Rmu_sc0000776.1_g000047 Rmu_sc0002131.1_g000031 Rmu_sc0002701.1_g000052 Rmu_sc0003318.1_g000004 Rmu_sc0004517.1_g000008 Rmu_sc0004877.1_g000002 Rmu_sc0039095.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033520 Rroxscaffold_1G00040810 Rroxscaffold_1G00040820 Rroxscaffold_2G00107400 Rroxscaffold_2G00116610 Rroxscaffold_3G00224610 Rroxscaffold_4G00304390 Rroxscaffold_4G00304400 Rroxscaffold_4G00315830 Rroxscaffold_5G00346140 Rroxscaffold_5G00380560 Rroxscaffold_6G00389400 Rroxscaffold_7G00183550 Rroxscaffold_7G00205640
rosa_rugosa	Rorug06G0035900
rosa_samantha	Rh1AG116800 Rh2BG425100 Rh2CG611600 Rh2DG432400 Rh3CG233600 Rh4AG247700 Rh4BG058900 Rh4CG156400 Rh5AG268300 Rh5AG485100 Rh5BG239200 Rh5BG398300 Rh6CG191700 Rh7AG359900 Rh7AG382100 Rh7AG403900 Rh7CG188000 Rh7CG378300 Rh7DG395000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	199
AccBSI	CCGCTC	1 cut(s)	44
AccI	GTMKAC	1 cut(s)	27
AciI	CCGC	1 cut(s)	42
AfiI	CCNNNNNNNGG	2 cut(s)	233, 251
AflIII	ACRYGT	1 cut(s)	158
AgsI	TTSAA	1 cut(s)	184
AluBI	AGCT	1 cut(s)	49
AluI	AGCT	1 cut(s)	49
Alw26I	GTCTC	1 cut(s)	330
ArsI	GACNNNNNNTTYG	2 cut(s)	56, 88
AspS9I	GGNCC	1 cut(s)	283
AsuHPI	GGTGA	2 cut(s)	49, 70
AvaII	GGWCC	1 cut(s)	283
BaeI	ACNNNNGTAYC	2 cut(s)	179, 212
BccI	CCATC	1 cut(s)	103
BcoDI	GTCTC	1 cut(s)	330
BfaI	CTAG	1 cut(s)	177
BfuAI	ACCTGC	1 cut(s)	199
BlpI	GCTNAGC	1 cut(s)	45
Bme18I	GGWCC	1 cut(s)	283
BmgT120I	GGNCC	1 cut(s)	283
BmsI	GCATC	1 cut(s)	257
Bpu1102I	GCTNAGC	1 cut(s)	45
BpuEI	CTTGAG	1 cut(s)	185
BsaJI	CCNNGG	1 cut(s)	295
Bsc4I	CCNNNNNNNGG	2 cut(s)	233, 251
Bse1I	ACTGG	1 cut(s)	256
BseDI	CCNNGG	1 cut(s)	295
BseGI	GGATG	1 cut(s)	272
BseLI	CCNNNNNNNGG	2 cut(s)	233, 251
BseMII	CTCAG	2 cut(s)	59, 219
BseNI	ACTGG	1 cut(s)	256
BseRI	GAGGAG	1 cut(s)	44
BslI	CCNNNNNNNGG	2 cut(s)	233, 251
BsmAI	GTCTC	1 cut(s)	330
Bsp1720I	GCTNAGC	1 cut(s)	45
Bsp19I	CCATGG	1 cut(s)	295
BspACI	CCGC	1 cut(s)	42
BspCNI	CTCAG	2 cut(s)	58, 220
BspMI	ACCTGC	1 cut(s)	199
BsrBI	CCGCTC	1 cut(s)	44
BsrI	ACTGG	1 cut(s)	256
BssECI	CCNNGG	1 cut(s)	295
BssT1I	CCWWGG	1 cut(s)	295
Bst4CI	ACNGT	1 cut(s)	82
BstDEI	CTNAG	2 cut(s)	45, 228
BstDSI	CCRYGG	1 cut(s)	295
BstF5I	GGATG	1 cut(s)	272
BstMAI	GTCTC	1 cut(s)	330
BstNSI	RCATGY	1 cut(s)	162
BtgI	CCRYGG	1 cut(s)	295
BtsCI	GGATG	1 cut(s)	272
BtsI	GCAGTG	1 cut(s)	13
BtsIMutI	CAGTG	1 cut(s)	13
BveI	ACCTGC	1 cut(s)	199
Cfr13I	GGNCC	1 cut(s)	283
CviAII	CATG	3 cut(s)	104, 159, 296
CviJI	RGCY	5 cut(s)	49, 125, 219, 244, 300
CviKI_1	RGCY	5 cut(s)	49, 125, 219, 244, 300
DdeI	CTNAG	2 cut(s)	45, 228
Eco130I	CCWWGG	1 cut(s)	295
Eco47I	GGWCC	1 cut(s)	283
EcoT14I	CCWWGG	1 cut(s)	295
ErhI	CCWWGG	1 cut(s)	295
FaeI	CATG	3 cut(s)	107, 162, 299
FaiI	YATR	5 cut(s)	105, 160, 210, 212, 297
FatI	CATG	3 cut(s)	103, 158, 295
FauNDI	CATATG	1 cut(s)	210
FblI	GTMKAC	1 cut(s)	27
FokI	GGATG	1 cut(s)	279
FspBI	CTAG	1 cut(s)	177
Hin1II	CATG	3 cut(s)	107, 162, 299
HphI	GGTGA	2 cut(s)	49, 70
Hpy166II	GTNNAC	2 cut(s)	28, 314
Hpy188I	TCNGA	1 cut(s)	259
Hpy188III	TCNNGA	3 cut(s)	184, 202, 227
Hpy8I	GTNNAC	2 cut(s)	28, 314
HpyAV	CCTTC	1 cut(s)	82
HpyCH4III	ACNGT	1 cut(s)	82
HpyCH4V	TGCA	2 cut(s)	13, 214
HpyF3I	CTNAG	2 cut(s)	45, 228
Hsp92II	CATG	3 cut(s)	107, 162, 299
LpnPI	CCDG	6 cut(s)	111, 204, 237, 240, 299, 322
LweI	GCATC	1 cut(s)	257
MaeI	CTAG	1 cut(s)	177
MaeIII	GTNAC	2 cut(s)	76, 277
MbiI	CCGCTC	1 cut(s)	44
MboII	GAAGA	1 cut(s)	176
MnlI	CCTC	2 cut(s)	16, 65
MseI	TTAA	1 cut(s)	305
NcoI	CCATGG	1 cut(s)	295
NdeI	CATATG	1 cut(s)	210
NlaIII	CATG	3 cut(s)	107, 162, 299
NmuCI	GTSAC	1 cut(s)	76
NspI	RCATGY	1 cut(s)	162
PciI	ACATGT	1 cut(s)	158
PscI	ACATGT	1 cut(s)	158
PspPI	GGNCC	1 cut(s)	283
SaqAI	TTAA	1 cut(s)	305
Sau96I	GGNCC	1 cut(s)	283
SetI	ASST	5 cut(s)	27, 51, 193, 288, 341
SfaNI	GCATC	1 cut(s)	257
SinI	GGWCC	1 cut(s)	283
SmlI	CTYRAG	1 cut(s)	200
SmoI	CTYRAG	1 cut(s)	200
SsiI	CCGC	1 cut(s)	42
SspMI	CTAG	1 cut(s)	177
StyI	CCWWGG	1 cut(s)	295
TaaI	ACNGT	1 cut(s)	82
Tru1I	TTAA	1 cut(s)	305
Tru9I	TTAA	1 cut(s)	305
TscAI	CASTG	1 cut(s)	20
TseFI	GTSAC	1 cut(s)	76
Tsp45I	GTSAC	1 cut(s)	76
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	296
TspRI	CASTG	1 cut(s)	20
VpaK11BI	GGWCC	1 cut(s)	283
XceI	RCATGY	1 cut(s)	162
XmiI	GTMKAC	1 cut(s)	27
XspI	CTAG	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.