Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002131.1

Orthogroup ID

OG0001693

Physical Location & Seq

Genomic Coordinates Forward (+)

118399 .. 123142

Gene Structure 4744 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002131.1_g000031.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

atgaacacgatacactacatggaggcgaacaccactggcgccaccgacaagctcaacgaagtggacatcgagtccggcgaggatgagatggaaatggcaaaggctagtgaggaagttgtggtgcaaaattctaatacatgtgaagaatgtggtgctagtttcaagaaacctgaatatctcaagcagcatatgcaaagccattctcttgaggtaggagatattgaaggtgatgctccatcagctaagcgattgcgaatgtcatcttctgatgcattgcaagatatgattagtggtgaggagctctcttttatatggaaatatgatgctgacccagcagcaaaggcaactgctgcaactgtccttggcatccaagttgggtgtggattcaggtctaacattccatgtaggagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000182 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0008097 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019843 GO:0022613 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0042254 GO:0042273 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0080084 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR zf-C2H2

Protein Analysis

137

Amino Acids

15.0

Weight (kDa)

4.61

Isoelectric Point (pI)

61.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001693)

Species	Orthologous Gene IDs
malus_domestica	MD15G1186700.v1.1
prunus_persica	Prupe.4G066100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0336331 RchiOBHm_Chr6g0290001 RchiOBHm_Chr7g0227531
rosa_laevigata	RLG00000002888 RLG00000019365
rosa_multiflora	Rmu_sc0000565.1_g000023 Rmu_sc0000776.1_g000047 Rmu_sc0002131.1_g000031 Rmu_sc0002701.1_g000052 Rmu_sc0003318.1_g000004 Rmu_sc0004517.1_g000008 Rmu_sc0004877.1_g000002 Rmu_sc0039095.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033520 Rroxscaffold_1G00040810 Rroxscaffold_1G00040820 Rroxscaffold_2G00107400 Rroxscaffold_2G00116610 Rroxscaffold_3G00224610 Rroxscaffold_4G00304390 Rroxscaffold_4G00304400 Rroxscaffold_4G00315830 Rroxscaffold_5G00346140 Rroxscaffold_5G00380560 Rroxscaffold_6G00389400 Rroxscaffold_7G00183550 Rroxscaffold_7G00205640
rosa_rugosa	Rorug06G0035900
rosa_samantha	Rh1AG116800 Rh2BG425100 Rh2CG611600 Rh2DG432400 Rh3CG233600 Rh4AG247700 Rh4BG058900 Rh4CG156400 Rh5AG268300 Rh5AG485100 Rh5BG239200 Rh5BG398300 Rh6CG191700 Rh7AG359900 Rh7AG382100 Rh7AG403900 Rh7CG188000 Rh7CG378300 Rh7DG395000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	38
AcsI	RAATTY	1 cut(s)	127
AcyI	GRCGYC	1 cut(s)	39
AflIII	ACRYGT	1 cut(s)	137
AgsI	TTSAA	2 cut(s)	163, 224
AhdI	GACNNNNNGTC	1 cut(s)	70
AluBI	AGCT	3 cut(s)	52, 242, 301
AluI	AGCT	3 cut(s)	52, 242, 301
Alw21I	GWGCWC	1 cut(s)	303
ApeKI	GCWGC	3 cut(s)	184, 335, 350
ApoI	RAATTY	1 cut(s)	127
AspLEI	GCGC	1 cut(s)	41
AsuHPI	GGTGA	2 cut(s)	239, 305
BanI	GGYRCC	1 cut(s)	38
BanII	GRGCYC	1 cut(s)	303
Bbv12I	GWGCWC	1 cut(s)	303
BbvI	GCAGC	3 cut(s)	196, 337, 347
BccI	CCATC	2 cut(s)	82, 244
BfaI	CTAG	2 cut(s)	105, 156
BfoI	RGCGCY	1 cut(s)	42
BisI	GCNGC	3 cut(s)	185, 336, 351
BlpI	GCTNAGC	1 cut(s)	243
BlsI	GCNGC	3 cut(s)	186, 337, 352
BmeRI	GACNNNNNGTC	1 cut(s)	70
BmiI	GGNNCC	1 cut(s)	40
BmsI	GCATC	4 cut(s)	220, 259, 313, 375
BplI	GAGNNNNNCTC	2 cut(s)	287, 319
Bpu1102I	GCTNAGC	1 cut(s)	243
BpuEI	CTTGAG	2 cut(s)	164, 227
BsaHI	GRCGYC	1 cut(s)	39
BsaJI	CCNNGG	1 cut(s)	361
Bse1I	ACTGG	1 cut(s)	40
Bse3DI	GCAATG	1 cut(s)	272
BseDI	CCNNGG	1 cut(s)	361
BseGI	GGATG	2 cut(s)	88, 366
BseMI	GCAATG	1 cut(s)	272
BseNI	ACTGG	1 cut(s)	40
BseRI	GAGGAG	1 cut(s)	311
BseXI	GCAGC	3 cut(s)	196, 337, 347
BseYI	CCCAGC	1 cut(s)	331
BshNI	GGYRCC	1 cut(s)	38
BsiHKAI	GWGCWC	1 cut(s)	303
BsiSI	CCGG	1 cut(s)	75
Bsp1286I	GDGCHC	1 cut(s)	303
Bsp1720I	GCTNAGC	1 cut(s)	243
BspLI	GGNNCC	1 cut(s)	40
BspT107I	GGYRCC	1 cut(s)	38
BsrDI	GCAATG	1 cut(s)	272
BsrI	ACTGG	1 cut(s)	40
BssECI	CCNNGG	1 cut(s)	361
BssNI	GRCGYC	1 cut(s)	39
BssT1I	CCWWGG	1 cut(s)	361
Bst4CI	ACNGT	1 cut(s)	358
BstACI	GRCGYC	1 cut(s)	39
BstAPI	GCANNNNNTGC	2 cut(s)	190, 350
BstDEI	CTNAG	1 cut(s)	243
BstF5I	GGATG	2 cut(s)	88, 366
BstH2I	RGCGCY	1 cut(s)	42
BstHHI	GCGC	1 cut(s)	41
BstMWI	GCNNNNNNNGC	5 cut(s)	190, 239, 332, 341, 350
BstNSI	RCATGY	1 cut(s)	141
BstV1I	GCAGC	3 cut(s)	196, 337, 347
BtsCI	GGATG	2 cut(s)	88, 366
BtsIMutI	CAGTG	1 cut(s)	33
CfoI	GCGC	1 cut(s)	41
CviAII	CATG	3 cut(s)	19, 138, 402
CviJI	RGCY	5 cut(s)	52, 104, 198, 242, 301
CviKI_1	RGCY	5 cut(s)	52, 104, 198, 242, 301
DdeI	CTNAG	1 cut(s)	243
DinI	GGCGCC	1 cut(s)	40
DriI	GACNNNNNGTC	1 cut(s)	70
Eam1105I	GACNNNNNGTC	1 cut(s)	70
Ecl136II	GAGCTC	1 cut(s)	301
Eco130I	CCWWGG	1 cut(s)	361
Eco24I	GRGCYC	1 cut(s)	303
Eco53kI	GAGCTC	1 cut(s)	301
EcoICRI	GAGCTC	1 cut(s)	301
EcoT14I	CCWWGG	1 cut(s)	361
EcoT22I	ATGCAT	1 cut(s)	274
EcoT38I	GRGCYC	1 cut(s)	303
EgeI	GGCGCC	1 cut(s)	40
EheI	GGCGCC	1 cut(s)	40
ErhI	CCWWGG	1 cut(s)	361
FaeI	CATG	3 cut(s)	22, 141, 405
FaiI	YATR	9 cut(s)	20, 139, 189, 191, 284, 311, 313, 321, 403
FatI	CATG	3 cut(s)	18, 137, 401
FauNDI	CATATG	1 cut(s)	189
Fnu4HI	GCNGC	3 cut(s)	185, 336, 351
FokI	GGATG	2 cut(s)	95, 353
FriOI	GRGCYC	1 cut(s)	303
Fsp4HI	GCNGC	3 cut(s)	185, 336, 351
FspBI	CTAG	2 cut(s)	105, 156
GlaI	GCGC	1 cut(s)	40
GluI	GCNGC	3 cut(s)	185, 336, 351
GsaI	CCCAGC	1 cut(s)	335
HaeII	RGCGCY	1 cut(s)	42
HapII	CCGG	1 cut(s)	75
HhaI	GCGC	1 cut(s)	41
Hin1I	GRCGYC	1 cut(s)	39
Hin1II	CATG	3 cut(s)	22, 141, 405
Hin6I	GCGC	1 cut(s)	39
HinP1I	GCGC	1 cut(s)	39
HinfI	GANTC	2 cut(s)	71, 384
HpaII	CCGG	1 cut(s)	75
HphI	GGTGA	2 cut(s)	239, 305
Hpy166II	GTNNAC	1 cut(s)	64
Hpy188I	TCNGA	1 cut(s)	268
Hpy188III	TCNNGA	2 cut(s)	163, 206
Hpy8I	GTNNAC	1 cut(s)	64
HpyAV	CCTTC	1 cut(s)	218
HpyCH4III	ACNGT	1 cut(s)	358
HpyCH4V	TGCA	5 cut(s)	124, 193, 272, 277, 353
HpyF10VI	GCNNNNNNNGC	5 cut(s)	190, 239, 332, 341, 350
HpyF3I	CTNAG	1 cut(s)	243
Hsp92I	GRCGYC	1 cut(s)	39
Hsp92II	CATG	3 cut(s)	22, 141, 405
HspAI	GCGC	1 cut(s)	39
KasI	GGCGCC	1 cut(s)	38
LmnI	GCTCC	2 cut(s)	238, 298
LpnPI	CCDG	5 cut(s)	21, 88, 183, 345, 373
Lsp1109I	GCAGC	3 cut(s)	196, 337, 347
LweI	GCATC	4 cut(s)	220, 259, 313, 375
MaeI	CTAG	2 cut(s)	105, 156
MboII	GAAGA	2 cut(s)	155, 255
MhlI	GDGCHC	1 cut(s)	303
MluCI	AATT	1 cut(s)	127
Mly113I	GGCGCC	1 cut(s)	39
MlyI	GAGTC	1 cut(s)	80
MnlI	CCTC	5 cut(s)	16, 73, 103, 202, 289
Mph1103I	ATGCAT	1 cut(s)	274
MspI	CCGG	1 cut(s)	75
MwoI	GCNNNNNNNGC	5 cut(s)	190, 239, 332, 341, 350
NarI	GGCGCC	1 cut(s)	39
NdeI	CATATG	1 cut(s)	189
NlaIII	CATG	3 cut(s)	22, 141, 405
NlaIV	GGNNCC	1 cut(s)	40
NsiI	ATGCAT	1 cut(s)	274
NspI	RCATGY	1 cut(s)	141
PciI	ACATGT	1 cut(s)	137
PcsI	WCGNNNNNNNCGW	1 cut(s)	75
PfeI	GAWTC	1 cut(s)	384
PkrI	GCNGC	3 cut(s)	186, 337, 352
PleI	GAGTC	1 cut(s)	79
PluTI	GGCGCC	1 cut(s)	42
PpsI	GAGTC	1 cut(s)	79
PscI	ACATGT	1 cut(s)	137
Psp124BI	GAGCTC	1 cut(s)	303
PspFI	CCCAGC	1 cut(s)	331
PspN4I	GGNNCC	1 cut(s)	40
SacI	GAGCTC	1 cut(s)	303
SatI	GCNGC	3 cut(s)	185, 336, 351
SchI	GAGTC	1 cut(s)	80
SduI	GDGCHC	1 cut(s)	303
SetI	ASST	7 cut(s)	54, 172, 213, 229, 244, 303, 392
SfaNI	GCATC	4 cut(s)	220, 259, 313, 375
SfoI	GGCGCC	1 cut(s)	40
SmlI	CTYRAG	2 cut(s)	179, 206
SmoI	CTYRAG	2 cut(s)	179, 206
Sse9I	AATT	1 cut(s)	127
SspDI	GGCGCC	1 cut(s)	38
SspMI	CTAG	2 cut(s)	105, 156
SstI	GAGCTC	1 cut(s)	303
StyI	CCWWGG	1 cut(s)	361
TaaI	ACNGT	1 cut(s)	358
TaqI	TCGA	1 cut(s)	69
TasI	AATT	1 cut(s)	127
TfiI	GAWTC	1 cut(s)	384
TscAI	CASTG	1 cut(s)	40
TseI	GCWGC	3 cut(s)	184, 335, 350
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	40
XapI	RAATTY	1 cut(s)	127
XceI	RCATGY	1 cut(s)	141
XcmI	CCANNNNNNNNNTGG	1 cut(s)	377
XspI	CTAG	2 cut(s)	105, 156
Zsp2I	ATGCAT	1 cut(s)	274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.