Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001693

Physical Location & Seq

Genomic Coordinates Forward (+)

4542968 .. 4543246

Gene Structure 279 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0035900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGGAGCATTCGGATGCTCCTTATTCTGAGAACATTGCGAGTGGTTTGGGTATGACCGGTGAAGCAGCGACAAAGTACTGGTGCACCGAGAAAGCCGAATACGACTACAACACAAATAAATGTACCGGTCCTGAGGAAGACGGTTGCCGCCACTACACTATTATAGTTACGAGGATAACAACCCAACTTGGTTGCGCTAGGGCCAAGTGCAAAAATGGCGATATGTTTGTATCCTGCAACTATGATCCTTCTGGAGAACCCGACCAGCGTCCTTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0031123 GO:0031124 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043631 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

CPSF_A MMS1_N

Protein Analysis

92

Amino Acids

10.26

Weight (kDa)

4.85

Isoelectric Point (pI)

45.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CAP	PF00188	6 - 81	5.2e-10	Cysteine-rich secretory protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001693)

Species	Orthologous Gene IDs
malus_domestica	MD15G1186700.v1.1
prunus_persica	Prupe.4G066100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0336331 RchiOBHm_Chr6g0290001 RchiOBHm_Chr7g0227531
rosa_laevigata	RLG00000002888 RLG00000019365
rosa_multiflora	Rmu_sc0000565.1_g000023 Rmu_sc0000776.1_g000047 Rmu_sc0002131.1_g000031 Rmu_sc0002701.1_g000052 Rmu_sc0003318.1_g000004 Rmu_sc0004517.1_g000008 Rmu_sc0004877.1_g000002 Rmu_sc0039095.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033520 Rroxscaffold_1G00040810 Rroxscaffold_1G00040820 Rroxscaffold_2G00107400 Rroxscaffold_2G00116610 Rroxscaffold_3G00224610 Rroxscaffold_4G00304390 Rroxscaffold_4G00304400 Rroxscaffold_4G00315830 Rroxscaffold_5G00346140 Rroxscaffold_5G00380560 Rroxscaffold_6G00389400 Rroxscaffold_7G00183550 Rroxscaffold_7G00205640
rosa_rugosa	Rorug06G0035900
rosa_samantha	Rh1AG116800 Rh2BG425100 Rh2CG611600 Rh2DG432400 Rh3CG233600 Rh4AG247700 Rh4BG058900 Rh4CG156400 Rh5AG268300 Rh5AG485100 Rh5BG239200 Rh5BG398300 Rh6CG191700 Rh7AG359900 Rh7AG382100 Rh7AG403900 Rh7CG188000 Rh7CG378300 Rh7DG395000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	148
AclWI	GGATC	1 cut(s)	239
AfaI	GTAC	2 cut(s)	77, 124
AgeI	ACCGGT	2 cut(s)	56, 125
Alw21I	GWGCWC	1 cut(s)	86
Alw44I	GTGCAC	1 cut(s)	82
AlwI	GGATC	1 cut(s)	239
AoxI	GGCC	1 cut(s)	201
ApaLI	GTGCAC	1 cut(s)	82
ApeKI	GCWGC	1 cut(s)	65
AsiGI	ACCGGT	2 cut(s)	56, 125
AspLEI	GCGC	1 cut(s)	197
AspS9I	GGNCC	2 cut(s)	128, 201
AsuHPI	GGTGA	1 cut(s)	71
AvaII	GGWCC	1 cut(s)	128
AxyI	CCTNAGG	1 cut(s)	132
BaeGI	GKGCMC	1 cut(s)	86
BbsI	GAAGAC	1 cut(s)	144
Bbv12I	GWGCWC	1 cut(s)	86
BbvI	GCAGC	1 cut(s)	77
BciVI	GTATCC	1 cut(s)	241
BfaI	CTAG	1 cut(s)	198
BfuI	GTATCC	1 cut(s)	241
BisI	GCNGC	2 cut(s)	66, 148
BlsI	GCNGC	2 cut(s)	67, 149
BmcAI	AGTACT	1 cut(s)	77
Bme18I	GGWCC	1 cut(s)	128
BmgT120I	GGNCC	2 cut(s)	128, 201
BmsI	GCATC	1 cut(s)	4
BoxI	GACNNNNGTC	1 cut(s)	267
BpiI	GAAGAC	1 cut(s)	144
BpmI	CTGGAG	1 cut(s)	273
BsaWI	WCCGGW	2 cut(s)	56, 125
Bse118I	RCCGGY	2 cut(s)	56, 125
Bse1I	ACTGG	1 cut(s)	83
Bse21I	CCTNAGG	1 cut(s)	132
Bse3DI	GCAATG	1 cut(s)	33
BseGI	GGATG	1 cut(s)	19
BseMI	GCAATG	1 cut(s)	33
BseMII	CTCAG	2 cut(s)	18, 123
BseNI	ACTGG	1 cut(s)	83
BseSI	GKGCMC	1 cut(s)	86
BseXI	GCAGC	1 cut(s)	77
BshFI	GGCC	1 cut(s)	203
BshTI	ACCGGT	2 cut(s)	56, 125
BsiHKAI	GWGCWC	1 cut(s)	86
BsiSI	CCGG	2 cut(s)	57, 126
BsmI	GAATGC	1 cut(s)	7
BsnI	GGCC	1 cut(s)	203
Bsp1286I	GDGCHC	1 cut(s)	86
Bsp143I	GATC	1 cut(s)	244
BspACI	CCGC	1 cut(s)	148
BspANI	GGCC	1 cut(s)	203
BspCNI	CTCAG	2 cut(s)	19, 124
BspPI	GGATC	1 cut(s)	239
BsrDI	GCAATG	1 cut(s)	33
BsrFI	RCCGGY	2 cut(s)	56, 125
BsrI	ACTGG	1 cut(s)	83
BssAI	RCCGGY	2 cut(s)	56, 125
BssMI	GATC	1 cut(s)	244
Bst4CI	ACNGT	1 cut(s)	143
BstDEI	CTNAG	2 cut(s)	27, 132
BstF5I	GGATG	1 cut(s)	19
BstHHI	GCGC	1 cut(s)	197
BstKTI	GATC	1 cut(s)	247
BstMBI	GATC	1 cut(s)	244
BstMWI	GCNNNNNNNGC	1 cut(s)	216
BstPAI	GACNNNNGTC	1 cut(s)	267
BstSLI	GKGCMC	1 cut(s)	86
BstV1I	GCAGC	1 cut(s)	77
BstV2I	GAAGAC	1 cut(s)	144
Bsu36I	CCTNAGG	1 cut(s)	132
BsuI	GTATCC	1 cut(s)	241
BsuRI	GGCC	1 cut(s)	203
BtsCI	GGATG	1 cut(s)	19
CfoI	GCGC	1 cut(s)	197
Cfr10I	RCCGGY	2 cut(s)	56, 125
Cfr13I	GGNCC	2 cut(s)	128, 201
CseI	GACGC	1 cut(s)	257
Csp6I	GTAC	2 cut(s)	76, 123
CspAI	ACCGGT	2 cut(s)	56, 125
CviJI	RGCY	2 cut(s)	95, 203
CviKI_1	RGCY	2 cut(s)	95, 203
CviQI	GTAC	2 cut(s)	76, 123
DdeI	CTNAG	2 cut(s)	27, 132
DpnI	GATC	1 cut(s)	246
DpnII	GATC	1 cut(s)	244
Eco47I	GGWCC	1 cut(s)	128
Eco81I	CCTNAGG	1 cut(s)	132
FaiI	YATR	4 cut(s)	53, 164, 224, 243
Fnu4HI	GCNGC	2 cut(s)	66, 148
FokI	GGATG	1 cut(s)	26
Fsp4HI	GCNGC	2 cut(s)	66, 148
FspBI	CTAG	1 cut(s)	198
GlaI	GCGC	1 cut(s)	196
GluI	GCNGC	2 cut(s)	66, 148
GsuI	CTGGAG	1 cut(s)	273
HaeIII	GGCC	1 cut(s)	203
HapII	CCGG	2 cut(s)	57, 126
HgaI	GACGC	1 cut(s)	257
HhaI	GCGC	1 cut(s)	197
Hin6I	GCGC	1 cut(s)	195
HinP1I	GCGC	1 cut(s)	195
HpaII	CCGG	2 cut(s)	57, 126
HphI	GGTGA	1 cut(s)	71
Hpy166II	GTNNAC	1 cut(s)	84
Hpy188I	TCNGA	2 cut(s)	13, 28
Hpy188III	TCNNGA	2 cut(s)	131, 252
Hpy8I	GTNNAC	1 cut(s)	84
HpyAV	CCTTC	1 cut(s)	258
HpyCH4III	ACNGT	1 cut(s)	143
HpyCH4V	TGCA	3 cut(s)	84, 210, 237
HpyF10VI	GCNNNNNNNGC	1 cut(s)	216
HpyF3I	CTNAG	2 cut(s)	27, 132
HspAI	GCGC	1 cut(s)	195
Kzo9I	GATC	1 cut(s)	244
LmnI	GCTCC	2 cut(s)	4, 22
LpnPI	CCDG	6 cut(s)	64, 70, 139, 144, 237, 247
Lsp1109I	GCAGC	1 cut(s)	77
LweI	GCATC	1 cut(s)	4
MaeI	CTAG	1 cut(s)	198
MaeIII	GTNAC	1 cut(s)	166
MalI	GATC	1 cut(s)	246
MboI	GATC	1 cut(s)	244
MboII	GAAGA	1 cut(s)	149
MhlI	GDGCHC	1 cut(s)	86
MnlI	CCTC	2 cut(s)	127, 165
MslI	CAYNNNNRTG	1 cut(s)	12
MspI	CCGG	2 cut(s)	57, 126
Mva1269I	GAATGC	1 cut(s)	7
MwoI	GCNNNNNNNGC	1 cut(s)	216
NdeII	GATC	1 cut(s)	244
PctI	GAATGC	1 cut(s)	7
PinAI	ACCGGT	2 cut(s)	56, 125
PkrI	GCNGC	2 cut(s)	67, 149
PshAI	GACNNNNGTC	1 cut(s)	267
PspPI	GGNCC	2 cut(s)	128, 201
RsaI	GTAC	2 cut(s)	77, 124
RsaNI	GTAC	2 cut(s)	76, 123
RseI	CAYNNNNRTG	1 cut(s)	12
SatI	GCNGC	2 cut(s)	66, 148
Sau3AI	GATC	1 cut(s)	244
Sau96I	GGNCC	2 cut(s)	128, 201
ScaI	AGTACT	1 cut(s)	77
SduI	GDGCHC	1 cut(s)	86
SfaNI	GCATC	1 cut(s)	4
SinI	GGWCC	1 cut(s)	128
SmiMI	CAYNNNNRTG	1 cut(s)	12
SsiI	CCGC	1 cut(s)	148
SspMI	CTAG	1 cut(s)	198
TaaI	ACNGT	1 cut(s)	143
TatI	WGTACW	1 cut(s)	75
TauI	GCSGC	1 cut(s)	150
TseI	GCWGC	1 cut(s)	65
VneI	GTGCAC	1 cut(s)	82
VpaK11BI	GGWCC	1 cut(s)	128
XspI	CTAG	1 cut(s)	198
ZrmI	AGTACT	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.