Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002701.1

Orthogroup ID

OG0001693

Physical Location & Seq

Genomic Coordinates Reverse (-)

161895 .. 166036

Gene Structure 4142 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002701.1_g000052.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

atgaacacgatgcactacatggtggtgaacaccactggcgccaccgacaagcttaacgaggtcgacatcgagtctggcgaggatgagatggaaatggcaaaggctagtgaggaagttgtggtggagaattctaatacatgtgaagaatgtggttctagtttcaagaaacctgaaaatctcaagttgcatatgcaaagccattctcttgaggtaggagatattgaaggtgatgccccatcagctaagcgattgcgaatgtcatgttctgatgcattgcaagatatgattagtagtgaggagctctctttatatgggtcagctcaaaacaatgcagaatcagctcaggattctttggttaacgttggtcctttgaaggacttctcctatgggctaaggataaatgcagatgcaaatgctactggaattgctaaacagagcaattatgaactggtgtgtggttcgggtcatggaaagaatggttcgctctgtgttcttcgtcagtcaattcctccagaaatgattactgagaaatatgatgctgacccagcagcaaaggcagcagctgcaactgtccttggcatccaagttgggtgtggattcaggtctaacattccatgtaggagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0031123 GO:0031124 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043631 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

CPSF_A MMS1_N

Protein Analysis

208

Amino Acids

22.3

Weight (kDa)

4.69

Isoelectric Point (pI)

55.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001693)

Species	Orthologous Gene IDs
malus_domestica	MD15G1186700.v1.1
prunus_persica	Prupe.4G066100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0336331 RchiOBHm_Chr6g0290001 RchiOBHm_Chr7g0227531
rosa_laevigata	RLG00000002888 RLG00000019365
rosa_multiflora	Rmu_sc0000565.1_g000023 Rmu_sc0000776.1_g000047 Rmu_sc0002131.1_g000031 Rmu_sc0002701.1_g000052 Rmu_sc0003318.1_g000004 Rmu_sc0004517.1_g000008 Rmu_sc0004877.1_g000002 Rmu_sc0039095.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033520 Rroxscaffold_1G00040810 Rroxscaffold_1G00040820 Rroxscaffold_2G00107400 Rroxscaffold_2G00116610 Rroxscaffold_3G00224610 Rroxscaffold_4G00304390 Rroxscaffold_4G00304400 Rroxscaffold_4G00315830 Rroxscaffold_5G00346140 Rroxscaffold_5G00380560 Rroxscaffold_6G00389400 Rroxscaffold_7G00183550 Rroxscaffold_7G00205640
rosa_rugosa	Rorug06G0035900
rosa_samantha	Rh1AG116800 Rh2BG425100 Rh2CG611600 Rh2DG432400 Rh3CG233600 Rh4AG247700 Rh4BG058900 Rh4CG156400 Rh5AG268300 Rh5AG485100 Rh5BG239200 Rh5BG398300 Rh6CG191700 Rh7AG359900 Rh7AG382100 Rh7AG403900 Rh7CG188000 Rh7CG378300 Rh7DG395000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	38
AccI	GTMKAC	1 cut(s)	63
AclI	AACGTT	1 cut(s)	360
AcsI	RAATTY	1 cut(s)	127
AcyI	GRCGYC	1 cut(s)	39
AflIII	ACRYGT	1 cut(s)	137
AgsI	TTSAA	3 cut(s)	163, 224, 373
AhdI	GACNNNNNGTC	1 cut(s)	70
AluBI	AGCT	6 cut(s)	52, 242, 301, 320, 341, 563
AluI	AGCT	6 cut(s)	52, 242, 301, 320, 341, 563
Alw21I	GWGCWC	1 cut(s)	303
AlwNI	CAGNNNCTG	1 cut(s)	563
ApeKI	GCWGC	4 cut(s)	548, 557, 560, 563
ApoI	RAATTY	1 cut(s)	127
Asp700I	GAANNNNTTC	1 cut(s)	377
AspLEI	GCGC	1 cut(s)	41
AspS9I	GGNCC	1 cut(s)	365
AsuHPI	GGTGA	2 cut(s)	37, 239
AvaII	GGWCC	1 cut(s)	365
BanI	GGYRCC	1 cut(s)	38
BanII	GRGCYC	1 cut(s)	303
Bbv12I	GWGCWC	1 cut(s)	303
BbvI	GCAGC	4 cut(s)	550, 560, 569, 572
BccI	CCATC	2 cut(s)	82, 244
BfaI	CTAG	2 cut(s)	105, 156
BfoI	RGCGCY	1 cut(s)	42
BisI	GCNGC	4 cut(s)	549, 558, 561, 564
BlpI	GCTNAGC	1 cut(s)	243
BlsI	GCNGC	4 cut(s)	550, 559, 562, 565
Bme18I	GGWCC	1 cut(s)	365
BmeRI	GACNNNNNGTC	1 cut(s)	70
BmgT120I	GGNCC	1 cut(s)	365
BmiI	GGNNCC	1 cut(s)	40
BmsI	GCATC	5 cut(s)	220, 259, 397, 526, 588
BplI	GAGNNNNNCTC	2 cut(s)	287, 319
BpmI	CTGGAG	1 cut(s)	495
Bpu10I	CCTNAGC	2 cut(s)	342, 392
Bpu1102I	GCTNAGC	1 cut(s)	243
BpuEI	CTTGAG	2 cut(s)	164, 227
BsaHI	GRCGYC	1 cut(s)	39
BsaJI	CCNNGG	1 cut(s)	574
Bse1I	ACTGG	3 cut(s)	40, 424, 453
Bse3DI	GCAATG	1 cut(s)	272
BseDI	CCNNGG	1 cut(s)	574
BseGI	GGATG	2 cut(s)	88, 579
BseMI	GCAATG	1 cut(s)	272
BseMII	CTCAG	2 cut(s)	356, 516
BseNI	ACTGG	3 cut(s)	40, 424, 453
BseRI	GAGGAG	1 cut(s)	311
BseXI	GCAGC	4 cut(s)	550, 560, 569, 572
BseYI	CCCAGC	1 cut(s)	544
BshNI	GGYRCC	1 cut(s)	38
BsiHKAI	GWGCWC	1 cut(s)	303
Bsp1286I	GDGCHC	1 cut(s)	303
Bsp1720I	GCTNAGC	1 cut(s)	243
BspCNI	CTCAG	2 cut(s)	355, 517
BspLI	GGNNCC	1 cut(s)	40
BspT107I	GGYRCC	1 cut(s)	38
BsrDI	GCAATG	1 cut(s)	272
BsrI	ACTGG	3 cut(s)	40, 424, 453
BssECI	CCNNGG	1 cut(s)	574
BssNI	GRCGYC	1 cut(s)	39
BssT1I	CCWWGG	1 cut(s)	574
Bst4CI	ACNGT	1 cut(s)	571
BstACI	GRCGYC	1 cut(s)	39
BstAPI	GCANNNNNTGC	1 cut(s)	563
BstDEI	CTNAG	4 cut(s)	243, 342, 392, 525
BstF5I	GGATG	2 cut(s)	88, 579
BstH2I	RGCGCY	1 cut(s)	42
BstHHI	GCGC	1 cut(s)	41
BstMWI	GCNNNNNNNGC	6 cut(s)	239, 338, 545, 554, 557, 563
BstNSI	RCATGY	1 cut(s)	141
BstV1I	GCAGC	4 cut(s)	550, 560, 569, 572
BtsCI	GGATG	2 cut(s)	88, 579
BtsIMutI	CAGTG	1 cut(s)	33
CaiI	CAGNNNCTG	1 cut(s)	563
CfoI	GCGC	1 cut(s)	41
Cfr13I	GGNCC	1 cut(s)	365
CviAII	CATG	5 cut(s)	19, 138, 261, 467, 615
CviJI	RGCY	9 cut(s)	52, 104, 198, 242, 301, 320, 341, 391, 563
CviKI_1	RGCY	9 cut(s)	52, 104, 198, 242, 301, 320, 341, 391, 563
DdeI	CTNAG	4 cut(s)	243, 342, 392, 525
DinI	GGCGCC	1 cut(s)	40
DriI	GACNNNNNGTC	1 cut(s)	70
Eam1105I	GACNNNNNGTC	1 cut(s)	70
Ecl136II	GAGCTC	1 cut(s)	301
Eco130I	CCWWGG	1 cut(s)	574
Eco24I	GRGCYC	1 cut(s)	303
Eco47I	GGWCC	1 cut(s)	365
Eco53kI	GAGCTC	1 cut(s)	301
EcoICRI	GAGCTC	1 cut(s)	301
EcoRI	GAATTC	1 cut(s)	127
EcoT14I	CCWWGG	1 cut(s)	574
EcoT22I	ATGCAT	1 cut(s)	274
EcoT38I	GRGCYC	1 cut(s)	303
EgeI	GGCGCC	1 cut(s)	40
EheI	GGCGCC	1 cut(s)	40
ErhI	CCWWGG	1 cut(s)	574
FaeI	CATG	5 cut(s)	22, 141, 264, 470, 618
FatI	CATG	5 cut(s)	18, 137, 260, 466, 614
FauNDI	CATATG	1 cut(s)	189
FblI	GTMKAC	1 cut(s)	63
Fnu4HI	GCNGC	4 cut(s)	549, 558, 561, 564
FokI	GGATG	2 cut(s)	95, 566
FriOI	GRGCYC	1 cut(s)	303
Fsp4HI	GCNGC	4 cut(s)	549, 558, 561, 564
FspBI	CTAG	2 cut(s)	105, 156
GlaI	GCGC	1 cut(s)	40
GluI	GCNGC	4 cut(s)	549, 558, 561, 564
GsaI	CCCAGC	1 cut(s)	548
GsuI	CTGGAG	1 cut(s)	495
HaeII	RGCGCY	1 cut(s)	42
HhaI	GCGC	1 cut(s)	41
Hin1I	GRCGYC	1 cut(s)	39
Hin1II	CATG	5 cut(s)	22, 141, 264, 470, 618
Hin6I	GCGC	1 cut(s)	39
HinP1I	GCGC	1 cut(s)	39
HincII	GTYRAC	2 cut(s)	64, 358
HindII	GTYRAC	2 cut(s)	64, 358
HindIII	AAGCTT	1 cut(s)	50
HinfI	GANTC	4 cut(s)	71, 335, 347, 597
HpaI	GTTAAC	1 cut(s)	358
HphI	GGTGA	2 cut(s)	37, 239
Hpy166II	GTNNAC	3 cut(s)	28, 64, 358
Hpy188I	TCNGA	1 cut(s)	268
Hpy188III	TCNNGA	4 cut(s)	163, 206, 344, 512
Hpy8I	GTNNAC	3 cut(s)	28, 64, 358
HpyAV	CCTTC	2 cut(s)	218, 367
HpyCH4III	ACNGT	1 cut(s)	571
HpyCH4IV	ACGT	1 cut(s)	360
HpyCH4V	TGCA	9 cut(s)	13, 187, 193, 272, 277, 332, 404, 410, 566
HpyF10VI	GCNNNNNNNGC	6 cut(s)	239, 338, 545, 554, 557, 563
HpyF3I	CTNAG	4 cut(s)	243, 342, 392, 525
HpySE526I	ACGT	1 cut(s)	360
Hsp92I	GRCGYC	1 cut(s)	39
Hsp92II	CATG	5 cut(s)	22, 141, 264, 470, 618
HspAI	GCGC	1 cut(s)	39
KasI	GGCGCC	1 cut(s)	38
KspAI	GTTAAC	1 cut(s)	358
LmnI	GCTCC	1 cut(s)	298
LpnPI	CCDG	9 cut(s)	21, 60, 183, 329, 405, 434, 525, 558, 586
Lsp1109I	GCAGC	4 cut(s)	550, 560, 569, 572
LweI	GCATC	5 cut(s)	220, 259, 397, 526, 588
MaeI	CTAG	2 cut(s)	105, 156
MaeII	ACGT	1 cut(s)	360
MboII	GAAGA	2 cut(s)	155, 485
MhlI	GDGCHC	1 cut(s)	303
MluCI	AATT	4 cut(s)	127, 423, 439, 504
Mly113I	GGCGCC	1 cut(s)	39
MlyI	GAGTC	1 cut(s)	80
MnlI	CCTC	6 cut(s)	52, 73, 103, 202, 289, 519
Mph1103I	ATGCAT	1 cut(s)	274
MroXI	GAANNNNTTC	1 cut(s)	377
MseI	TTAA	2 cut(s)	54, 357
MslI	CAYNNNNRTG	1 cut(s)	23
MspA1I	CMGCKG	1 cut(s)	563
MwoI	GCNNNNNNNGC	6 cut(s)	239, 338, 545, 554, 557, 563
NarI	GGCGCC	1 cut(s)	39
NdeI	CATATG	1 cut(s)	189
NlaIII	CATG	5 cut(s)	22, 141, 264, 470, 618
NlaIV	GGNNCC	1 cut(s)	40
NsiI	ATGCAT	1 cut(s)	274
NspI	RCATGY	1 cut(s)	141
PciI	ACATGT	1 cut(s)	137
PcsI	WCGNNNNNNNCGW	1 cut(s)	75
PdmI	GAANNNNTTC	1 cut(s)	377
PfeI	GAWTC	3 cut(s)	335, 347, 597
PkrI	GCNGC	4 cut(s)	550, 559, 562, 565
PleI	GAGTC	1 cut(s)	79
PluTI	GGCGCC	1 cut(s)	42
PpsI	GAGTC	1 cut(s)	79
PscI	ACATGT	1 cut(s)	137
Psp124BI	GAGCTC	1 cut(s)	303
Psp1406I	AACGTT	1 cut(s)	360
PspFI	CCCAGC	1 cut(s)	544
PspN4I	GGNNCC	1 cut(s)	40
PspPI	GGNCC	1 cut(s)	365
PstNI	CAGNNNCTG	1 cut(s)	563
PvuII	CAGCTG	1 cut(s)	563
RseI	CAYNNNNRTG	1 cut(s)	23
SacI	GAGCTC	1 cut(s)	303
SalI	GTCGAC	1 cut(s)	62
SaqAI	TTAA	2 cut(s)	54, 357
SatI	GCNGC	4 cut(s)	549, 558, 561, 564
Sau96I	GGNCC	1 cut(s)	365
SchI	GAGTC	1 cut(s)	80
SduI	GDGCHC	1 cut(s)	303
SfaNI	GCATC	5 cut(s)	220, 259, 397, 526, 588
SfoI	GGCGCC	1 cut(s)	40
SinI	GGWCC	1 cut(s)	365
SmiMI	CAYNNNNRTG	1 cut(s)	23
SmlI	CTYRAG	2 cut(s)	179, 206
SmoI	CTYRAG	2 cut(s)	179, 206
Sse9I	AATT	4 cut(s)	127, 423, 439, 504
SspDI	GGCGCC	1 cut(s)	38
SspMI	CTAG	2 cut(s)	105, 156
SstI	GAGCTC	1 cut(s)	303
StyI	CCWWGG	1 cut(s)	574
TaaI	ACNGT	1 cut(s)	571
TaiI	ACGT	1 cut(s)	363
TaqI	TCGA	2 cut(s)	63, 69
TasI	AATT	4 cut(s)	127, 423, 439, 504
TfiI	GAWTC	3 cut(s)	335, 347, 597
Tru1I	TTAA	2 cut(s)	54, 357
Tru9I	TTAA	2 cut(s)	54, 357
TscAI	CASTG	1 cut(s)	40
TseI	GCWGC	4 cut(s)	548, 557, 560, 563
TspDTI	ATGAA	2 cut(s)	17, 459
TspRI	CASTG	1 cut(s)	40
VpaK11BI	GGWCC	1 cut(s)	365
XapI	RAATTY	1 cut(s)	127
XceI	RCATGY	1 cut(s)	141
XcmI	CCANNNNNNNNNTGG	1 cut(s)	590
XmiI	GTMKAC	1 cut(s)	63
XmnI	GAANNNNTTC	1 cut(s)	377
XspI	CTAG	2 cut(s)	105, 156
Zsp2I	ATGCAT	1 cut(s)	274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.