Rh5BG398300

TATA-box-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0001693
Physical Location & Seq
Forward (+)
64623150 .. 64646602
23453 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG398300.1

Sequence Viewer

Length: 426 bp
ATGGTGTGCAGTGCCAAAAGCGAAGAGCTGTCGCAACTCGCAGCTAGGAAGTGTGCACGTACCATCCTGAAGATGGGTTTCAATGCTAAGTTTAAGGACTTCAAGATCCAGAACATTGTTGCCAACTGTGATGTTAGATTCCCGATCAGACTCGAAGGTCTTGCTTATGCAAACCCAGAGGTTACAAGTTATGAGCCGGAATTTTTTTCCAGGGCTGAGGATGAGATGGAAATGGCAAAGGCTGGTGGGGAAGTTGTGGTGGAGAAGTCTAATACATGTGAAGAATGTGGTGCTAGTTTCAAGAAACCTGCATATCTCAAGAAGCGTATGCAAAGCCATTCTCCTGAGCTTTTCCGCAACTCCAAGAAACGACGTCGCATAGAGGCATTGACTCCTCGTCCTCCATTTCTATTAAACCCCGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03022 ko05016 ko05165 ko05166 ko05168 ko05169 ko05203 map03022 map05016 map05165 map05166 map05168 map05169 map05203
Pfam Domains
Protein Families
TBP

Protein Analysis

141

Amino Acids

16.05

Weight (kDa)

9.14

Isoelectric Point (pI)

57.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TBP PF00352 33 - 70 1e-08 Transcription factor TFIID (or TATA-binding protein, TBP)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 156
AatII GACGTC 1 cut(s) 376
Acc36I ACCTGC 1 cut(s) 316
AciI CCGC 1 cut(s) 355
AclWI GGATC 1 cut(s) 100
AcsI RAATTY 1 cut(s) 200
AcuI CTGAAG 1 cut(s) 89
AcyI GRCGYC 1 cut(s) 373
AfaI GTAC 1 cut(s) 61
AfiI CCNNNNNNNGG 1 cut(s) 73
AflIII ACRYGT 1 cut(s) 275
AgsI TTSAA 3 cut(s) 82, 103, 301
AhdI GACNNNNNGTC 1 cut(s) 396
AjnI CCWGG 1 cut(s) 209
AluBI AGCT 3 cut(s) 28, 44, 349
AluI AGCT 3 cut(s) 28, 44, 349
Alw21I GWGCWC 1 cut(s) 58
Alw44I GTGCAC 1 cut(s) 54
AlwI GGATC 1 cut(s) 100
ApaLI GTGCAC 1 cut(s) 54
ApeKI GCWGC 1 cut(s) 41
ApoI RAATTY 1 cut(s) 200
BaeGI GKGCMC 1 cut(s) 58
Bbv12I GWGCWC 1 cut(s) 58
BbvCI CCTCAGC 1 cut(s) 216
BbvI GCAGC 1 cut(s) 53
BccI CCATC 3 cut(s) 67, 71, 220
BcgI CGANNNNNNTGC 2 cut(s) 143, 177
BciT130I CCWGG 1 cut(s) 211
BfaI CTAG 2 cut(s) 45, 294
BfuAI ACCTGC 1 cut(s) 316
BisI GCNGC 1 cut(s) 42
BlsI GCNGC 1 cut(s) 43
Bme1390I CCNGG 1 cut(s) 211
BmeRI GACNNNNNGTC 1 cut(s) 396
BmrFI CCNGG 1 cut(s) 211
Bpu10I CCTNAGC 2 cut(s) 216, 345
BpuEI CTTGAG 1 cut(s) 302
BsaAI YACGTR 1 cut(s) 59
BsaHI GRCGYC 1 cut(s) 373
BsaJI CCNNGG 1 cut(s) 210
Bsc4I CCNNNNNNNGG 1 cut(s) 73
BseBI CCWGG 1 cut(s) 211
BseDI CCNNGG 1 cut(s) 210
BseGI GGATG 2 cut(s) 63, 226
BseLI CCNNNNNNNGG 1 cut(s) 73
BseMII CTCAG 2 cut(s) 207, 336
BseRI GAGGAG 1 cut(s) 384
BseSI GKGCMC 1 cut(s) 58
BseXI GCAGC 1 cut(s) 53
BsgI GTGCAG 1 cut(s) 28
BsiHKAI GWGCWC 1 cut(s) 58
BsiSI CCGG 1 cut(s) 197
BslI CCNNNNNNNGG 1 cut(s) 73
Bsp1286I GDGCHC 1 cut(s) 58
Bsp143I GATC 2 cut(s) 105, 144
BspACI CCGC 1 cut(s) 355
BspCNI CTCAG 2 cut(s) 208, 337
BspMI ACCTGC 1 cut(s) 316
BspPI GGATC 1 cut(s) 100
BspQI GCTCTTC 1 cut(s) 18
BssECI CCNNGG 1 cut(s) 210
BssMI GATC 2 cut(s) 105, 144
BssNI GRCGYC 1 cut(s) 373
Bst2UI CCWGG 1 cut(s) 211
Bst4CI ACNGT 1 cut(s) 128
Bst6I CTCTTC 1 cut(s) 18
BstACI GRCGYC 1 cut(s) 373
BstBAI YACGTR 1 cut(s) 59
BstDEI CTNAG 3 cut(s) 87, 216, 345
BstF5I GGATG 2 cut(s) 63, 226
BstKTI GATC 2 cut(s) 108, 147
BstMBI GATC 2 cut(s) 105, 144
BstNI CCWGG 1 cut(s) 211
BstNSI RCATGY 1 cut(s) 279
BstSCI CCNGG 1 cut(s) 209
BstSLI GKGCMC 1 cut(s) 58
BstV1I GCAGC 1 cut(s) 53
BstX2I RGATCY 1 cut(s) 105
BstYI RGATCY 1 cut(s) 105
BtsCI GGATG 2 cut(s) 63, 226
BtsI GCAGTG 1 cut(s) 16
BtsIMutI CAGTG 1 cut(s) 16
BveI ACCTGC 1 cut(s) 316
Csp6I GTAC 1 cut(s) 60
CviAII CATG 1 cut(s) 276
CviJI RGCY 7 cut(s) 28, 44, 196, 215, 242, 336, 349
CviKI_1 RGCY 7 cut(s) 28, 44, 196, 215, 242, 336, 349
CviQI GTAC 1 cut(s) 60
DdeI CTNAG 3 cut(s) 87, 216, 345
DpnI GATC 2 cut(s) 107, 146
DpnII GATC 2 cut(s) 105, 144
DrdI GACNNNNNNGTC 1 cut(s) 156
DriI GACNNNNNGTC 1 cut(s) 396
DseDI GACNNNNNNGTC 1 cut(s) 156
Eam1104I CTCTTC 1 cut(s) 18
Eam1105I GACNNNNNGTC 1 cut(s) 396
EarI CTCTTC 1 cut(s) 18
Eco57I CTGAAG 1 cut(s) 89
EcoRII CCWGG 1 cut(s) 209
FaeI CATG 1 cut(s) 279
FaiI YATR 6 cut(s) 168, 192, 277, 313, 329, 380
FatI CATG 1 cut(s) 275
Fnu4HI GCNGC 1 cut(s) 42
FokI GGATG 2 cut(s) 50, 233
Fsp4HI GCNGC 1 cut(s) 42
FspBI CTAG 2 cut(s) 45, 294
GluI GCNGC 1 cut(s) 42
HapII CCGG 1 cut(s) 197
Hin1I GRCGYC 1 cut(s) 373
Hin1II CATG 1 cut(s) 279
HinfI GANTC 3 cut(s) 138, 150, 391
HpaII CCGG 1 cut(s) 197
Hpy166II GTNNAC 1 cut(s) 56
Hpy188I TCNGA 1 cut(s) 149
Hpy188III TCNNGA 7 cut(s) 67, 103, 109, 142, 301, 319, 344
Hpy8I GTNNAC 1 cut(s) 56
Hpy99I CGWCG 2 cut(s) 375, 378
HpyAV CCTTC 1 cut(s) 149
HpyCH4III ACNGT 1 cut(s) 128
HpyCH4IV ACGT 2 cut(s) 58, 373
HpyCH4V TGCA 5 cut(s) 9, 56, 170, 311, 331
HpyF3I CTNAG 3 cut(s) 87, 216, 345
HpySE526I ACGT 2 cut(s) 58, 373
Hsp92I GRCGYC 1 cut(s) 373
Hsp92II CATG 1 cut(s) 279
Kzo9I GATC 2 cut(s) 105, 144
LguI GCTCTTC 1 cut(s) 18
LpnPI CCDG 9 cut(s) 80, 122, 189, 196, 210, 223, 228, 321, 357
Lsp1109I GCAGC 1 cut(s) 53
MaeI CTAG 2 cut(s) 45, 294
MaeII ACGT 2 cut(s) 58, 373
MaeIII GTNAC 1 cut(s) 181
MalI GATC 2 cut(s) 107, 146
MboI GATC 2 cut(s) 105, 144
MboII GAAGA 3 cut(s) 35, 82, 293
MflI RGATCY 1 cut(s) 105
MhlI GDGCHC 1 cut(s) 58
MluCI AATT 1 cut(s) 200
MlyI GAGTC 2 cut(s) 144, 385
MnlI CCTC 5 cut(s) 172, 211, 376, 405, 411
MseI TTAA 2 cut(s) 93, 413
MspI CCGG 1 cut(s) 197
MspR9I CCNGG 1 cut(s) 211
MvaI CCWGG 1 cut(s) 211
NdeII GATC 2 cut(s) 105, 144
NlaIII CATG 1 cut(s) 279
NspI RCATGY 1 cut(s) 279
PciI ACATGT 1 cut(s) 275
PciSI GCTCTTC 1 cut(s) 18
PfeI GAWTC 1 cut(s) 138
PkrI GCNGC 1 cut(s) 43
PleI GAGTC 2 cut(s) 144, 385
PpsI GAGTC 2 cut(s) 144, 385
Ppu21I YACGTR 1 cut(s) 59
PscI ACATGT 1 cut(s) 275
Psp6I CCWGG 1 cut(s) 209
PspGI CCWGG 1 cut(s) 209
PsuI RGATCY 1 cut(s) 105
RsaI GTAC 1 cut(s) 61
RsaNI GTAC 1 cut(s) 60
SapI GCTCTTC 1 cut(s) 18
SaqAI TTAA 2 cut(s) 93, 413
SatI GCNGC 1 cut(s) 42
Sau3AI GATC 2 cut(s) 105, 144
SchI GAGTC 2 cut(s) 144, 385
ScrFI CCNGG 1 cut(s) 211
SduI GDGCHC 1 cut(s) 58
SetI ASST 8 cut(s) 30, 46, 61, 160, 183, 310, 351, 376
SmlI CTYRAG 1 cut(s) 317
SmoI CTYRAG 1 cut(s) 317
Sse9I AATT 1 cut(s) 200
SsiI CCGC 1 cut(s) 355
SspMI CTAG 2 cut(s) 45, 294
StyD4I CCNGG 1 cut(s) 209
TaaI ACNGT 1 cut(s) 128
TaiI ACGT 2 cut(s) 61, 376
TaqI TCGA 1 cut(s) 153
TasI AATT 1 cut(s) 200
TfiI GAWTC 1 cut(s) 138
Tru1I TTAA 2 cut(s) 93, 413
Tru9I TTAA 2 cut(s) 93, 413
TscAI CASTG 1 cut(s) 16
TseI GCWGC 1 cut(s) 41
TspRI CASTG 1 cut(s) 16
VneI GTGCAC 1 cut(s) 54
XapI RAATTY 1 cut(s) 200
XceI RCATGY 1 cut(s) 279
XcmI CCANNNNNNNNNTGG 1 cut(s) 70
XspI CTAG 2 cut(s) 45, 294
ZraI GACGTC 1 cut(s) 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.