Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001693

Physical Location & Seq

Genomic Coordinates Forward (+)

58597789 .. 58598360

Gene Structure 572 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00040820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGGTCGATGCATTGCAAGATATGATTAGTGGTGAGGAGCTCTCTTTATATGGGTCAGCTCAAAACAATGCAGAATCAGCTCAGTTTGTTCACTTTTCGAAGAATGCATTTCCTGACTTCTCTTATGGGCTAAGGATAAATGCAGATGCAAATGCTACTGGAATTGCTAAACAGAGCAATTATGAACTGGTAGCTGATGCACTTACTCCCCCTTGTTATATACAAGTTTTCCTTGATATGAATAATGGGCTATATGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0031123 GO:0031124 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043631 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

CPSF_A MMS1_N

Protein Analysis

86

Amino Acids

9.37

Weight (kDa)

4.07

Isoelectric Point (pI)

22.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001693)

Species	Orthologous Gene IDs
malus_domestica	MD15G1186700.v1.1
prunus_persica	Prupe.4G066100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0336331 RchiOBHm_Chr6g0290001 RchiOBHm_Chr7g0227531
rosa_laevigata	RLG00000002888 RLG00000019365
rosa_multiflora	Rmu_sc0000565.1_g000023 Rmu_sc0000776.1_g000047 Rmu_sc0002131.1_g000031 Rmu_sc0002701.1_g000052 Rmu_sc0003318.1_g000004 Rmu_sc0004517.1_g000008 Rmu_sc0004877.1_g000002 Rmu_sc0039095.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033520 Rroxscaffold_1G00040810 Rroxscaffold_1G00040820 Rroxscaffold_2G00107400 Rroxscaffold_2G00116610 Rroxscaffold_3G00224610 Rroxscaffold_4G00304390 Rroxscaffold_4G00304400 Rroxscaffold_4G00315830 Rroxscaffold_5G00346140 Rroxscaffold_5G00380560 Rroxscaffold_6G00389400 Rroxscaffold_7G00183550 Rroxscaffold_7G00205640
rosa_rugosa	Rorug06G0035900
rosa_samantha	Rh1AG116800 Rh2BG425100 Rh2CG611600 Rh2DG432400 Rh3CG233600 Rh4AG247700 Rh4BG058900 Rh4CG156400 Rh5AG268300 Rh5AG485100 Rh5BG239200 Rh5BG398300 Rh6CG191700 Rh7AG359900 Rh7AG382100 Rh7AG403900 Rh7CG188000 Rh7CG378300 Rh7DG395000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AluBI	AGCT	4 cut(s)	40, 59, 80, 194
AluI	AGCT	4 cut(s)	40, 59, 80, 194
Alw21I	GWGCWC	1 cut(s)	42
AsuHPI	GGTGA	1 cut(s)	44
AsuII	TTCGAA	1 cut(s)	98
BanII	GRGCYC	1 cut(s)	42
Bbv12I	GWGCWC	1 cut(s)	42
BmsI	GCATC	2 cut(s)	136, 187
BplI	GAGNNNNNCTC	2 cut(s)	26, 58
Bpu10I	CCTNAGC	1 cut(s)	131
Bpu14I	TTCGAA	1 cut(s)	98
Bse1I	ACTGG	2 cut(s)	163, 192
Bse3DI	GCAATG	1 cut(s)	11
BseMI	GCAATG	1 cut(s)	11
BseMII	CTCAG	1 cut(s)	95
BseNI	ACTGG	2 cut(s)	163, 192
BseRI	GAGGAG	1 cut(s)	50
BsiHKAI	GWGCWC	1 cut(s)	42
BsmI	GAATGC	1 cut(s)	109
Bsp119I	TTCGAA	1 cut(s)	98
Bsp1286I	GDGCHC	1 cut(s)	42
BspCNI	CTCAG	1 cut(s)	94
BspT104I	TTCGAA	1 cut(s)	98
BsrDI	GCAATG	1 cut(s)	11
BsrI	ACTGG	2 cut(s)	163, 192
BstBI	TTCGAA	1 cut(s)	98
BstDEI	CTNAG	2 cut(s)	81, 131
BstMWI	GCNNNNNNNGC	1 cut(s)	77
CviJI	RGCY	6 cut(s)	40, 59, 80, 130, 194, 250
CviKI_1	RGCY	6 cut(s)	40, 59, 80, 130, 194, 250
DdeI	CTNAG	2 cut(s)	81, 131
Ecl136II	GAGCTC	1 cut(s)	40
Eco24I	GRGCYC	1 cut(s)	42
Eco53kI	GAGCTC	1 cut(s)	40
EcoICRI	GAGCTC	1 cut(s)	40
EcoT22I	ATGCAT	2 cut(s)	13, 109
EcoT38I	GRGCYC	1 cut(s)	42
FalI	AAGNNNNNCTT	2 cut(s)	216, 248
FriOI	GRGCYC	1 cut(s)	42
HinfI	GANTC	1 cut(s)	74
HphI	GGTGA	1 cut(s)	44
Hpy166II	GTNNAC	1 cut(s)	91
Hpy188III	TCNNGA	1 cut(s)	113
Hpy8I	GTNNAC	1 cut(s)	91
HpyCH4V	TGCA	7 cut(s)	11, 16, 71, 107, 143, 149, 200
HpyF10VI	GCNNNNNNNGC	1 cut(s)	77
HpyF3I	CTNAG	2 cut(s)	81, 131
LmnI	GCTCC	1 cut(s)	37
LpnPI	CCDG	3 cut(s)	126, 144, 173
LweI	GCATC	2 cut(s)	136, 187
MboII	GAAGA	1 cut(s)	112
MhlI	GDGCHC	1 cut(s)	42
MluCI	AATT	2 cut(s)	162, 178
MnlI	CCTC	1 cut(s)	28
Mph1103I	ATGCAT	2 cut(s)	13, 109
MseI	TTAA	1 cut(s)	259
Mva1269I	GAATGC	1 cut(s)	109
MwoI	GCNNNNNNNGC	1 cut(s)	77
NsiI	ATGCAT	2 cut(s)	13, 109
NspV	TTCGAA	1 cut(s)	98
PctI	GAATGC	1 cut(s)	109
PfeI	GAWTC	1 cut(s)	74
Psp124BI	GAGCTC	1 cut(s)	42
SacI	GAGCTC	1 cut(s)	42
SaqAI	TTAA	1 cut(s)	259
SduI	GDGCHC	1 cut(s)	42
SetI	ASST	4 cut(s)	42, 61, 82, 196
SfaNI	GCATC	2 cut(s)	136, 187
SfuI	TTCGAA	1 cut(s)	98
SgeI	CNNG	7 cut(s)	29, 125, 171, 200, 225, 236, 245
Sse9I	AATT	2 cut(s)	162, 178
SstI	GAGCTC	1 cut(s)	42
TaqI	TCGA	2 cut(s)	6, 98
TasI	AATT	2 cut(s)	162, 178
TfiI	GAWTC	1 cut(s)	74
Tru1I	TTAA	1 cut(s)	259
Tru9I	TTAA	1 cut(s)	259
TspDTI	ATGAA	2 cut(s)	198, 254
Zsp2I	ATGCAT	2 cut(s)	13, 109

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.