Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001693

Physical Location & Seq

Genomic Coordinates Reverse (-)

7820425 .. 7830145

Gene Structure 9721 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00224610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGTGCGTTCCTGTGATATCTTGGATGCTTATTCTGCATATTATGACTCGTACAAGGAAGAAAATATTCTCTTTCTCATTTTCAACGGTGCCAAGGGACAACATTAGTGTGCGAATGACCTCCTTAGCTACTTCGGGTAAGAATGGATTTGTTTCCTTTATCCACACCATGCAGTCATATGGAAATATCACAATAGCTCATCGCGTTGCTCGATTAATGTTGCAGAAAATGTTGCGTTTTACTTTCACGAGGCTAGTATGCAATACCCCCGAGGTTGCTTCAGGAATTTATGTCCATGTGAAGGGAGCTGGATCATATTATCTAGCTGCAACCCCTAATAATGCGACTGCAAGTGTCGACATCGAGTCCGGCGAGGTCTTGTACCCTAGCCTCGGTAGTGAGAACCAGCTCCATTGGGGTTTCATACGCAAGGTCTACGACATCTTATCCGCTCGGCTTCTCCTCACCACCGACATCTCCTTCGTCACCATTCTCTACACTCCCGTCAAACATGATCAAAGTTTCTCCCCTATTTTGTCTAACTTAGAGGTTAAGAATGGCCTAATGATTGGGAGAGAGAAGATGTGTATGGAATGTATTAGGTGCGGAATGTGGATGAGATATGAATTCAATTCTCTGCATAAAGTTAGAGATCGAACAAAGGTTAGGCATGCATATAGTCAACCTATAATAGGGTTAAATACTGGTAACTACCCTGTGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bax1-I

Protein Analysis

241

Amino Acids

27.36

Weight (kDa)

9.76

Isoelectric Point (pI)

37.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001693)

Species	Orthologous Gene IDs
malus_domestica	MD15G1186700.v1.1
prunus_persica	Prupe.4G066100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0336331 RchiOBHm_Chr6g0290001 RchiOBHm_Chr7g0227531
rosa_laevigata	RLG00000002888 RLG00000019365
rosa_multiflora	Rmu_sc0000565.1_g000023 Rmu_sc0000776.1_g000047 Rmu_sc0002131.1_g000031 Rmu_sc0002701.1_g000052 Rmu_sc0003318.1_g000004 Rmu_sc0004517.1_g000008 Rmu_sc0004877.1_g000002 Rmu_sc0039095.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033520 Rroxscaffold_1G00040810 Rroxscaffold_1G00040820 Rroxscaffold_2G00107400 Rroxscaffold_2G00116610 Rroxscaffold_3G00224610 Rroxscaffold_4G00304390 Rroxscaffold_4G00304400 Rroxscaffold_4G00315830 Rroxscaffold_5G00346140 Rroxscaffold_5G00380560 Rroxscaffold_6G00389400 Rroxscaffold_7G00183550 Rroxscaffold_7G00205640
rosa_rugosa	Rorug06G0035900
rosa_samantha	Rh1AG116800 Rh2BG425100 Rh2CG611600 Rh2DG432400 Rh3CG233600 Rh4AG247700 Rh4BG058900 Rh4CG156400 Rh5AG268300 Rh5AG485100 Rh5BG239200 Rh5BG398300 Rh6CG191700 Rh7AG359900 Rh7AG382100 Rh7AG403900 Rh7CG188000 Rh7CG378300 Rh7DG395000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	88
AccBSI	CCGCTC	1 cut(s)	452
AccI	GTMKAC	2 cut(s)	357, 435
AccII	CGCG	1 cut(s)	204
AciI	CCGC	2 cut(s)	450, 606
AclWI	GGATC	1 cut(s)	319
AcsI	RAATTY	2 cut(s)	285, 626
AcuI	CTGAAG	1 cut(s)	264
AfaI	GTAC	2 cut(s)	52, 383
AfiI	CCNNNNNNNGG	3 cut(s)	301, 392, 692
AgsI	TTSAA	2 cut(s)	84, 631
AhdI	GACNNNNNGTC	1 cut(s)	364
AluBI	AGCT	5 cut(s)	128, 197, 308, 326, 409
AluI	AGCT	5 cut(s)	128, 197, 308, 326, 409
AlwI	GGATC	1 cut(s)	319
Ama87I	CYCGRG	1 cut(s)	269
AoxI	GGCC	1 cut(s)	559
ApeKI	GCWGC	1 cut(s)	326
ApoI	RAATTY	2 cut(s)	285, 626
ArsI	GACNNNNNNTTYG	2 cut(s)	464, 496
AseI	ATTAAT	1 cut(s)	215
Asp700I	GAANNNNTTC	1 cut(s)	65
AsuHPI	GGTGA	2 cut(s)	457, 478
AvaI	CYCGRG	1 cut(s)	269
BanI	GGYRCC	1 cut(s)	88
BauI	CACGAG	1 cut(s)	247
BbvI	GCAGC	1 cut(s)	313
BclI	TGATCA	1 cut(s)	514
BfaI	CTAG	3 cut(s)	254, 323, 387
BisI	GCNGC	1 cut(s)	327
BlsI	GCNGC	1 cut(s)	328
BmeRI	GACNNNNNGTC	1 cut(s)	364
BmeT110I	CYCGRG	1 cut(s)	269
BmiI	GGNNCC	1 cut(s)	90
BmsI	GCATC	1 cut(s)	15
Bpu10I	CCTNAGC	1 cut(s)	124
BsaJI	CCNNGG	3 cut(s)	92, 270, 391
Bsc4I	CCNNNNNNNGG	3 cut(s)	301, 392, 692
Bse1I	ACTGG	1 cut(s)	709
BseDI	CCNNGG	3 cut(s)	92, 270, 391
BseGI	GGATG	2 cut(s)	30, 621
BseLI	CCNNNNNNNGG	3 cut(s)	301, 392, 692
BseNI	ACTGG	1 cut(s)	709
BseRI	GAGGAG	1 cut(s)	452
BseXI	GCAGC	1 cut(s)	313
Bsh1236I	CGCG	1 cut(s)	204
BshFI	GGCC	1 cut(s)	561
BshNI	GGYRCC	1 cut(s)	88
BsiHKCI	CYCGRG	1 cut(s)	269
BsiSI	CCGG	1 cut(s)	369
BslFI	GGGAC	1 cut(s)	110
BslI	CCNNNNNNNGG	3 cut(s)	301, 392, 692
BsmFI	GGGAC	1 cut(s)	110
BsnI	GGCC	1 cut(s)	561
BsoBI	CYCGRG	1 cut(s)	269
Bsp143I	GATC	3 cut(s)	311, 514, 652
BspACI	CCGC	2 cut(s)	450, 606
BspANI	GGCC	1 cut(s)	561
BspFNI	CGCG	1 cut(s)	204
BspLI	GGNNCC	1 cut(s)	90
BspPI	GGATC	1 cut(s)	319
BspT107I	GGYRCC	1 cut(s)	88
BsrBI	CCGCTC	1 cut(s)	452
BsrI	ACTGG	1 cut(s)	709
BssECI	CCNNGG	3 cut(s)	92, 270, 391
BssMI	GATC	3 cut(s)	311, 514, 652
BssSI	CACGAG	1 cut(s)	247
BssT1I	CCWWGG	1 cut(s)	92
Bst2BI	CACGAG	1 cut(s)	247
Bst4CI	ACNGT	1 cut(s)	88
BstC8I	GCNNGC	1 cut(s)	672
BstDEI	CTNAG	2 cut(s)	124, 544
BstENI	CCTNNNNNAGG	1 cut(s)	690
BstF5I	GGATG	2 cut(s)	30, 621
BstFNI	CGCG	1 cut(s)	204
BstKTI	GATC	3 cut(s)	314, 517, 655
BstMBI	GATC	3 cut(s)	311, 514, 652
BstMWI	GCNNNNNNNGC	1 cut(s)	34
BstNSI	RCATGY	1 cut(s)	674
BstUI	CGCG	1 cut(s)	204
BstV1I	GCAGC	1 cut(s)	313
BsuRI	GGCC	1 cut(s)	561
BtgZI	GCGATG	1 cut(s)	185
BtsCI	GGATG	2 cut(s)	30, 621
Cac8I	GCNNGC	1 cut(s)	672
Csp6I	GTAC	2 cut(s)	51, 382
CviAII	CATG	4 cut(s)	169, 296, 512, 671
CviJI	RGCY	9 cut(s)	128, 197, 253, 308, 326, 390, 409, 457, 561
CviKI_1	RGCY	9 cut(s)	128, 197, 253, 308, 326, 390, 409, 457, 561
CviQI	GTAC	2 cut(s)	51, 382
DdeI	CTNAG	2 cut(s)	124, 544
DpnI	GATC	3 cut(s)	313, 516, 654
DpnII	GATC	3 cut(s)	311, 514, 652
DriI	GACNNNNNGTC	1 cut(s)	364
Eam1105I	GACNNNNNGTC	1 cut(s)	364
Eco130I	CCWWGG	1 cut(s)	92
Eco32I	GATATC	1 cut(s)	18
Eco57I	CTGAAG	1 cut(s)	264
Eco88I	CYCGRG	1 cut(s)	269
EcoNI	CCTNNNNNAGG	1 cut(s)	690
EcoRI	GAATTC	1 cut(s)	626
EcoRV	GATATC	1 cut(s)	18
EcoT14I	CCWWGG	1 cut(s)	92
EcoT22I	ATGCAT	1 cut(s)	676
ErhI	CCWWGG	1 cut(s)	92
FaeI	CATG	4 cut(s)	172, 299, 515, 674
FaqI	GGGAC	1 cut(s)	110
FatI	CATG	4 cut(s)	168, 295, 511, 670
FauNDI	CATATG	1 cut(s)	178
FbaI	TGATCA	1 cut(s)	514
FblI	GTMKAC	2 cut(s)	357, 435
Fnu4HI	GCNGC	1 cut(s)	327
FokI	GGATG	2 cut(s)	37, 628
Fsp4HI	GCNGC	1 cut(s)	327
FspBI	CTAG	3 cut(s)	254, 323, 387
GluI	GCNGC	1 cut(s)	327
HaeIII	GGCC	1 cut(s)	561
HapII	CCGG	1 cut(s)	369
Hin1II	CATG	4 cut(s)	172, 299, 515, 674
HincII	GTYRAC	2 cut(s)	358, 683
HindII	GTYRAC	2 cut(s)	358, 683
HinfI	GANTC	2 cut(s)	46, 365
HpaII	CCGG	1 cut(s)	369
HphI	GGTGA	2 cut(s)	457, 478
Hpy166II	GTNNAC	3 cut(s)	358, 436, 683
Hpy188III	TCNNGA	2 cut(s)	247, 282
Hpy8I	GTNNAC	3 cut(s)	358, 436, 683
HpyAV	CCTTC	2 cut(s)	295, 490
HpyCH4III	ACNGT	1 cut(s)	88
HpyCH4V	TGCA	8 cut(s)	37, 172, 223, 261, 329, 350, 640, 674
HpyF10VI	GCNNNNNNNGC	1 cut(s)	34
HpyF3I	CTNAG	2 cut(s)	124, 544
Hsp92II	CATG	4 cut(s)	172, 299, 515, 674
Ksp22I	TGATCA	1 cut(s)	514
Kzo9I	GATC	3 cut(s)	311, 514, 652
LmnI	GCTCC	2 cut(s)	305, 414
LpnPI	CCDG	6 cut(s)	24, 267, 294, 382, 419, 690
Lsp1109I	GCAGC	1 cut(s)	313
LweI	GCATC	1 cut(s)	15
MaeI	CTAG	3 cut(s)	254, 323, 387
MaeIII	GTNAC	2 cut(s)	484, 707
MalI	GATC	3 cut(s)	313, 516, 654
MbiI	CCGCTC	1 cut(s)	452
MboI	GATC	3 cut(s)	311, 514, 652
MboII	GAAGA	2 cut(s)	70, 592
MluCI	AATT	3 cut(s)	285, 626, 631
MlyI	GAGTC	2 cut(s)	40, 374
MnlI	CCTC	7 cut(s)	130, 243, 265, 367, 401, 473, 541
Mph1103I	ATGCAT	1 cut(s)	676
MroXI	GAANNNNTTC	1 cut(s)	65
MseI	TTAA	3 cut(s)	215, 552, 698
MslI	CAYNNNNRTG	1 cut(s)	107
MspI	CCGG	1 cut(s)	369
MvnI	CGCG	1 cut(s)	204
MwoI	GCNNNNNNNGC	1 cut(s)	34
NdeI	CATATG	1 cut(s)	178
NdeII	GATC	3 cut(s)	311, 514, 652
NlaIII	CATG	4 cut(s)	172, 299, 515, 674
NlaIV	GGNNCC	1 cut(s)	90
NmeAIII	GCCGAG	1 cut(s)	433
NmuCI	GTSAC	1 cut(s)	484
NsiI	ATGCAT	1 cut(s)	676
NspI	RCATGY	1 cut(s)	674
PaeI	GCATGC	1 cut(s)	674
PcsI	WCGNNNNNNNCGW	2 cut(s)	208, 369
PdmI	GAANNNNTTC	1 cut(s)	65
PkrI	GCNGC	1 cut(s)	328
PleI	GAGTC	2 cut(s)	40, 373
PpsI	GAGTC	2 cut(s)	40, 373
PshBI	ATTAAT	1 cut(s)	215
PspN4I	GGNNCC	1 cut(s)	90
RsaI	GTAC	2 cut(s)	52, 383
RsaNI	GTAC	2 cut(s)	51, 382
RseI	CAYNNNNRTG	1 cut(s)	107
SalI	GTCGAC	1 cut(s)	356
SaqAI	TTAA	3 cut(s)	215, 552, 698
SatI	GCNGC	1 cut(s)	327
Sau3AI	GATC	3 cut(s)	311, 514, 652
SchI	GAGTC	2 cut(s)	40, 374
SfaNI	GCATC	1 cut(s)	15
SmiMI	CAYNNNNRTG	1 cut(s)	107
SphI	GCATGC	1 cut(s)	674
Sse9I	AATT	3 cut(s)	285, 626, 631
SsiI	CCGC	2 cut(s)	450, 606
SspI	AATATT	1 cut(s)	66
SspMI	CTAG	3 cut(s)	254, 323, 387
StyI	CCWWGG	1 cut(s)	92
TaaI	ACNGT	1 cut(s)	88
TaqI	TCGA	4 cut(s)	211, 357, 363, 655
TasI	AATT	3 cut(s)	285, 626, 631
Tru1I	TTAA	3 cut(s)	215, 552, 698
Tru9I	TTAA	3 cut(s)	215, 552, 698
TseFI	GTSAC	1 cut(s)	484
TseI	GCWGC	1 cut(s)	326
Tsp45I	GTSAC	1 cut(s)	484
TspDTI	ATGAA	2 cut(s)	412, 639
VspI	ATTAAT	1 cut(s)	215
XagI	CCTNNNNNAGG	1 cut(s)	690
XapI	RAATTY	2 cut(s)	285, 626
XceI	RCATGY	1 cut(s)	674
XmiI	GTMKAC	2 cut(s)	357, 435
XmnI	GAANNNNTTC	1 cut(s)	65
XspI	CTAG	3 cut(s)	254, 323, 387
Zsp2I	ATGCAT	1 cut(s)	676

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.