Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0039095.1

Orthogroup ID

OG0001693

Physical Location & Seq

Genomic Coordinates Reverse (-)

289 .. 612

Gene Structure 324 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0039095.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

atgcactacgcggaggtgagcaccaccggcgccggcggcaagcacgacgaggtcgacatcgagtccggcgaggtcttgtacccgggcctcagcaaaggcgagaaccagctccgttggggtttcatccgcaaggtctacggcatcttatccgctcagcttcttctcaccaccgccatctccttcgtcaccgtcctctacactcccatcaacgatctcctcaagggcagccccggccttctcatgttcttcgccttccttcctttcgtctgtacgtgccctccaaaccctaattttatttcccgatttgtggtgtctaattggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bax1-I

Protein Analysis

107

Amino Acids

11.81

Weight (kDa)

6.03

Isoelectric Point (pI)

38.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001693)

Species	Orthologous Gene IDs
malus_domestica	MD15G1186700.v1.1
prunus_persica	Prupe.4G066100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0336331 RchiOBHm_Chr6g0290001 RchiOBHm_Chr7g0227531
rosa_laevigata	RLG00000002888 RLG00000019365
rosa_multiflora	Rmu_sc0000565.1_g000023 Rmu_sc0000776.1_g000047 Rmu_sc0002131.1_g000031 Rmu_sc0002701.1_g000052 Rmu_sc0003318.1_g000004 Rmu_sc0004517.1_g000008 Rmu_sc0004877.1_g000002 Rmu_sc0039095.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033520 Rroxscaffold_1G00040810 Rroxscaffold_1G00040820 Rroxscaffold_2G00107400 Rroxscaffold_2G00116610 Rroxscaffold_3G00224610 Rroxscaffold_4G00304390 Rroxscaffold_4G00304400 Rroxscaffold_4G00315830 Rroxscaffold_5G00346140 Rroxscaffold_5G00380560 Rroxscaffold_6G00389400 Rroxscaffold_7G00183550 Rroxscaffold_7G00205640
rosa_rugosa	Rorug06G0035900
rosa_samantha	Rh1AG116800 Rh2BG425100 Rh2CG611600 Rh2DG432400 Rh3CG233600 Rh4AG247700 Rh4BG058900 Rh4CG156400 Rh5AG268300 Rh5AG485100 Rh5BG239200 Rh5BG398300 Rh6CG191700 Rh7AG359900 Rh7AG382100 Rh7AG403900 Rh7CG188000 Rh7CG378300 Rh7DG395000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	29
AccBSI	CCGCTC	1 cut(s)	152
AccI	GTMKAC	2 cut(s)	54, 135
AccII	CGCG	1 cut(s)	11
AciI	CCGC	5 cut(s)	11, 36, 127, 150, 171
AcyI	GRCGYC	1 cut(s)	30
AfaI	GTAC	2 cut(s)	80, 271
AfiI	CCNNNNNNNGG	1 cut(s)	307
AhdI	GACNNNNNGTC	1 cut(s)	61
AluBI	AGCT	2 cut(s)	109, 157
AluI	AGCT	2 cut(s)	109, 157
Alw21I	GWGCWC	1 cut(s)	23
Ama87I	CYCGRG	1 cut(s)	82
AoxI	GGCC	2 cut(s)	85, 232
ApeKI	GCWGC	1 cut(s)	225
AspLEI	GCGC	1 cut(s)	32
AspS9I	GGNCC	1 cut(s)	85
AsuC2I	CCSGG	3 cut(s)	83, 84, 231
AsuHPI	GGTGA	3 cut(s)	28, 157, 178
AvaI	CYCGRG	1 cut(s)	82
BaeGI	GKGCMC	1 cut(s)	278
BanI	GGYRCC	1 cut(s)	29
Bbv12I	GWGCWC	1 cut(s)	23
BbvCI	CCTCAGC	1 cut(s)	89
BbvI	GCAGC	1 cut(s)	237
BccI	CCATC	2 cut(s)	182, 212
BceAI	ACGGC	1 cut(s)	154
BcnI	CCSGG	3 cut(s)	83, 84, 231
BfoI	RGCGCY	1 cut(s)	33
BisI	GCNGC	2 cut(s)	37, 226
BlpI	GCTNAGC	1 cut(s)	153
BlsI	GCNGC	2 cut(s)	38, 227
Bme1390I	CCNGG	3 cut(s)	83, 84, 231
BmeRI	GACNNNNNGTC	1 cut(s)	61
BmeT110I	CYCGRG	1 cut(s)	82
BmgT120I	GGNCC	1 cut(s)	85
BmiI	GGNNCC	1 cut(s)	31
BmrFI	CCNGG	3 cut(s)	83, 84, 231
BmsI	GCATC	1 cut(s)	150
Bpu10I	CCTNAGC	1 cut(s)	89
Bpu1102I	GCTNAGC	1 cut(s)	153
BpuEI	CTTGAG	1 cut(s)	203
BpuMI	CCSGG	3 cut(s)	83, 84, 231
BsaAI	YACGTR	1 cut(s)	273
BsaHI	GRCGYC	1 cut(s)	30
BsaJI	CCNNGG	2 cut(s)	82, 229
BsaXI	ACNNNNNCTCC	2 cut(s)	262, 292
Bsc4I	CCNNNNNNNGG	1 cut(s)	307
Bse118I	RCCGGY	2 cut(s)	26, 32
BseDI	CCNNGG	2 cut(s)	82, 229
BseGI	GGATG	1 cut(s)	123
BseLI	CCNNNNNNNGG	1 cut(s)	307
BseMII	CTCAG	2 cut(s)	103, 167
BseRI	GAGGAG	1 cut(s)	206
BseSI	GKGCMC	1 cut(s)	278
BseXI	GCAGC	1 cut(s)	237
Bsh1236I	CGCG	1 cut(s)	11
BshFI	GGCC	2 cut(s)	87, 234
BshNI	GGYRCC	1 cut(s)	29
BsiHKAI	GWGCWC	1 cut(s)	23
BsiHKCI	CYCGRG	1 cut(s)	82
BsiSI	CCGG	5 cut(s)	27, 33, 66, 83, 231
BslI	CCNNNNNNNGG	1 cut(s)	307
BsnI	GGCC	2 cut(s)	87, 234
BsoBI	CYCGRG	1 cut(s)	82
Bsp1286I	GDGCHC	2 cut(s)	23, 278
Bsp143I	GATC	1 cut(s)	211
Bsp1720I	GCTNAGC	1 cut(s)	153
BspACI	CCGC	5 cut(s)	11, 36, 127, 150, 171
BspANI	GGCC	2 cut(s)	87, 234
BspCNI	CTCAG	2 cut(s)	102, 166
BspFNI	CGCG	1 cut(s)	11
BspLI	GGNNCC	1 cut(s)	31
BspT107I	GGYRCC	1 cut(s)	29
BsrBI	CCGCTC	1 cut(s)	152
BsrFI	RCCGGY	2 cut(s)	26, 32
BssAI	RCCGGY	2 cut(s)	26, 32
BssECI	CCNNGG	2 cut(s)	82, 229
BssMI	GATC	1 cut(s)	211
BssNI	GRCGYC	1 cut(s)	30
Bst4CI	ACNGT	1 cut(s)	190
BstACI	GRCGYC	1 cut(s)	30
BstBAI	YACGTR	1 cut(s)	273
BstC8I	GCNNGC	2 cut(s)	34, 41
BstDEI	CTNAG	2 cut(s)	89, 153
BstF5I	GGATG	1 cut(s)	123
BstFNI	CGCG	1 cut(s)	11
BstH2I	RGCGCY	1 cut(s)	33
BstHHI	GCGC	1 cut(s)	32
BstKTI	GATC	1 cut(s)	214
BstMBI	GATC	1 cut(s)	211
BstMWI	GCNNNNNNNGC	3 cut(s)	27, 36, 231
BstSCI	CCNGG	3 cut(s)	81, 82, 229
BstSLI	GKGCMC	1 cut(s)	278
BstUI	CGCG	1 cut(s)	11
BstV1I	GCAGC	1 cut(s)	237
BsuRI	GGCC	2 cut(s)	87, 234
BtsCI	GGATG	1 cut(s)	123
Cac8I	GCNNGC	2 cut(s)	34, 41
CfoI	GCGC	1 cut(s)	32
Cfr10I	RCCGGY	2 cut(s)	26, 32
Cfr13I	GGNCC	1 cut(s)	85
Cfr9I	CCCGGG	1 cut(s)	82
Csp6I	GTAC	2 cut(s)	79, 270
CviAII	CATG	1 cut(s)	241
CviJI	RGCY	5 cut(s)	87, 109, 157, 228, 234
CviKI_1	RGCY	5 cut(s)	87, 109, 157, 228, 234
CviQI	GTAC	2 cut(s)	79, 270
DdeI	CTNAG	2 cut(s)	89, 153
DinI	GGCGCC	1 cut(s)	31
DpnI	GATC	1 cut(s)	213
DpnII	GATC	1 cut(s)	211
DriI	GACNNNNNGTC	1 cut(s)	61
Eam1105I	GACNNNNNGTC	1 cut(s)	61
Eco88I	CYCGRG	1 cut(s)	82
EgeI	GGCGCC	1 cut(s)	31
EheI	GGCGCC	1 cut(s)	31
FaeI	CATG	1 cut(s)	244
FaiI	YATR	1 cut(s)	242
FatI	CATG	1 cut(s)	240
FblI	GTMKAC	2 cut(s)	54, 135
Fnu4HI	GCNGC	2 cut(s)	37, 226
FokI	GGATG	1 cut(s)	110
Fsp4HI	GCNGC	2 cut(s)	37, 226
GlaI	GCGC	1 cut(s)	31
GluI	GCNGC	2 cut(s)	37, 226
HaeII	RGCGCY	1 cut(s)	33
HaeIII	GGCC	2 cut(s)	87, 234
HapII	CCGG	5 cut(s)	27, 33, 66, 83, 231
HhaI	GCGC	1 cut(s)	32
Hin1I	GRCGYC	1 cut(s)	30
Hin1II	CATG	1 cut(s)	244
Hin6I	GCGC	1 cut(s)	30
HinP1I	GCGC	1 cut(s)	30
HincII	GTYRAC	1 cut(s)	55
HindII	GTYRAC	1 cut(s)	55
HinfI	GANTC	1 cut(s)	62
HpaII	CCGG	5 cut(s)	27, 33, 66, 83, 231
HphI	GGTGA	3 cut(s)	28, 157, 178
Hpy166II	GTNNAC	2 cut(s)	55, 136
Hpy188III	TCNNGA	1 cut(s)	300
Hpy8I	GTNNAC	2 cut(s)	55, 136
Hpy99I	CGWCG	1 cut(s)	50
HpyAV	CCTTC	4 cut(s)	190, 245, 262, 266
HpyCH4III	ACNGT	1 cut(s)	190
HpyCH4IV	ACGT	1 cut(s)	272
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	3 cut(s)	27, 36, 231
HpyF3I	CTNAG	2 cut(s)	89, 153
HpySE526I	ACGT	1 cut(s)	272
Hsp92I	GRCGYC	1 cut(s)	30
Hsp92II	CATG	1 cut(s)	244
HspAI	GCGC	1 cut(s)	30
KasI	GGCGCC	1 cut(s)	29
KroI	GCCGGC	1 cut(s)	32
KroNI	GCCGGC	1 cut(s)	34
Kzo9I	GATC	1 cut(s)	211
LmnI	GCTCC	1 cut(s)	114
LpnPI	CCDG	6 cut(s)	40, 46, 79, 96, 119, 244
Lsp1109I	GCAGC	1 cut(s)	237
LweI	GCATC	1 cut(s)	150
MaeII	ACGT	1 cut(s)	272
MaeIII	GTNAC	1 cut(s)	184
MalI	GATC	1 cut(s)	213
MbiI	CCGCTC	1 cut(s)	152
MboI	GATC	1 cut(s)	211
MboII	GAAGA	2 cut(s)	152, 238
MhlI	GDGCHC	2 cut(s)	23, 278
MluCI	AATT	2 cut(s)	289, 316
Mly113I	GGCGCC	1 cut(s)	30
MlyI	GAGTC	1 cut(s)	71
MnlI	CCTC	7 cut(s)	7, 43, 64, 98, 203, 227, 288
MreI	CGCCGGCG	1 cut(s)	32
MroNI	GCCGGC	1 cut(s)	32
MspI	CCGG	5 cut(s)	27, 33, 66, 83, 231
MspR9I	CCNGG	3 cut(s)	83, 84, 231
MvnI	CGCG	1 cut(s)	11
MwoI	GCNNNNNNNGC	3 cut(s)	27, 36, 231
NaeI	GCCGGC	1 cut(s)	34
NarI	GGCGCC	1 cut(s)	30
NciI	CCSGG	3 cut(s)	83, 84, 231
NdeII	GATC	1 cut(s)	211
NgoMIV	GCCGGC	1 cut(s)	32
NlaIII	CATG	1 cut(s)	244
NlaIV	GGNNCC	1 cut(s)	31
NmuCI	GTSAC	1 cut(s)	184
PcsI	WCGNNNNNNNCGW	2 cut(s)	51, 66
PdiI	GCCGGC	1 cut(s)	34
PflFI	GACNNNGTC	1 cut(s)	50
PkrI	GCNGC	2 cut(s)	38, 227
PleI	GAGTC	1 cut(s)	70
PluTI	GGCGCC	1 cut(s)	33
PpsI	GAGTC	1 cut(s)	70
Ppu21I	YACGTR	1 cut(s)	273
PspN4I	GGNNCC	1 cut(s)	31
PspPI	GGNCC	1 cut(s)	85
PsyI	GACNNNGTC	1 cut(s)	50
RsaI	GTAC	2 cut(s)	80, 271
RsaNI	GTAC	2 cut(s)	79, 270
SalI	GTCGAC	1 cut(s)	53
SatI	GCNGC	2 cut(s)	37, 226
Sau3AI	GATC	1 cut(s)	211
Sau96I	GGNCC	1 cut(s)	85
SchI	GAGTC	1 cut(s)	71
ScrFI	CCNGG	3 cut(s)	83, 84, 231
SduI	GDGCHC	2 cut(s)	23, 278
SetI	ASST	7 cut(s)	18, 54, 75, 111, 135, 159, 275
SfaNI	GCATC	1 cut(s)	150
SfoI	GGCGCC	1 cut(s)	31
SgrAI	CRCCGGYG	2 cut(s)	26, 32
SmaI	CCCGGG	1 cut(s)	84
SmlI	CTYRAG	1 cut(s)	218
SmoI	CTYRAG	1 cut(s)	218
Sse9I	AATT	2 cut(s)	289, 316
SsiI	CCGC	5 cut(s)	11, 36, 127, 150, 171
SspDI	GGCGCC	1 cut(s)	29
StyD4I	CCNGG	3 cut(s)	81, 82, 229
TaaI	ACNGT	1 cut(s)	190
TaiI	ACGT	1 cut(s)	275
TaqI	TCGA	2 cut(s)	54, 60
TasI	AATT	2 cut(s)	289, 316
TauI	GCSGC	1 cut(s)	39
TseFI	GTSAC	1 cut(s)	184
TseI	GCWGC	1 cut(s)	225
Tsp45I	GTSAC	1 cut(s)	184
TspDTI	ATGAA	1 cut(s)	112
TspGWI	ACGGA	1 cut(s)	101
TspMI	CCCGGG	1 cut(s)	82
Tth111I	GACNNNGTC	1 cut(s)	50
XmaI	CCCGGG	1 cut(s)	82
XmiI	GTMKAC	2 cut(s)	54, 135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.