Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001693

Physical Location & Seq

Genomic Coordinates Forward (+)

59955679 .. 59977558

Gene Structure 21880 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG425100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGGCAAAGGCTGGTGGGGAAGTTGTGGTGGAGAAGTCTAATACATATGAAGAATGTGGTGCTAGTTTTAAGAAACCTGTGTATCTTAAGAAGCATATGCAAAGCCATTCTCCTGAGAGGCGAAGCAGCTCCTTGTCACAGCACACACCCAAGCCAACCACTTTCTGTCTCTACCATGCAACAGTTGATGGAAATTATGAACCTCCAAAAGCTGAATCCCAATCACGCCGTTCACTATTTGACCCTACTTCCTCTTCAATCATTAATTTTCCTCTTCAATTATCAGAGCTCCCTTCCAAGAAGAAATCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000182 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0008097 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019843 GO:0022613 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0042254 GO:0042273 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0080084 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR zf-C2H2

Protein Analysis

103

Amino Acids

11.49

Weight (kDa)

9.33

Isoelectric Point (pI)

77.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001693)

Species	Orthologous Gene IDs
malus_domestica	MD15G1186700.v1.1
prunus_persica	Prupe.4G066100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0336331 RchiOBHm_Chr6g0290001 RchiOBHm_Chr7g0227531
rosa_laevigata	RLG00000002888 RLG00000019365
rosa_multiflora	Rmu_sc0000565.1_g000023 Rmu_sc0000776.1_g000047 Rmu_sc0002131.1_g000031 Rmu_sc0002701.1_g000052 Rmu_sc0003318.1_g000004 Rmu_sc0004517.1_g000008 Rmu_sc0004877.1_g000002 Rmu_sc0039095.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033520 Rroxscaffold_1G00040810 Rroxscaffold_1G00040820 Rroxscaffold_2G00107400 Rroxscaffold_2G00116610 Rroxscaffold_3G00224610 Rroxscaffold_4G00304390 Rroxscaffold_4G00304400 Rroxscaffold_4G00315830 Rroxscaffold_5G00346140 Rroxscaffold_5G00380560 Rroxscaffold_6G00389400 Rroxscaffold_7G00183550 Rroxscaffold_7G00205640
rosa_rugosa	Rorug06G0035900
rosa_samantha	Rh1AG116800 Rh2BG425100 Rh2CG611600 Rh2DG432400 Rh3CG233600 Rh4AG247700 Rh4BG058900 Rh4CG156400 Rh5AG268300 Rh5AG485100 Rh5BG239200 Rh5BG398300 Rh6CG191700 Rh7AG359900 Rh7AG382100 Rh7AG403900 Rh7CG188000 Rh7CG378300 Rh7DG395000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AflII	CTTAAG	1 cut(s)	86
AgsI	TTSAA	2 cut(s)	258, 278
AluBI	AGCT	3 cut(s)	129, 212, 289
AluI	AGCT	3 cut(s)	129, 212, 289
Alw21I	GWGCWC	1 cut(s)	291
Alw26I	GTCTC	1 cut(s)	173
ApeKI	GCWGC	1 cut(s)	126
AseI	ATTAAT	1 cut(s)	264
BaeI	ACNNNNGTAYC	2 cut(s)	65, 98
BanII	GRGCYC	1 cut(s)	291
Bbv12I	GWGCWC	1 cut(s)	291
BbvI	GCAGC	1 cut(s)	138
BccI	CCATC	1 cut(s)	182
BceAI	ACGGC	1 cut(s)	213
BcoDI	GTCTC	1 cut(s)	173
BfaI	CTAG	2 cut(s)	63, 310
BfrI	CTTAAG	1 cut(s)	86
BisI	GCNGC	1 cut(s)	127
BlsI	GCNGC	1 cut(s)	128
BseMII	CTCAG	1 cut(s)	105
BseXI	GCAGC	1 cut(s)	138
BsiHKAI	GWGCWC	1 cut(s)	291
BsmAI	GTCTC	1 cut(s)	173
Bsp1286I	GDGCHC	1 cut(s)	291
BspCNI	CTCAG	1 cut(s)	106
BspTI	CTTAAG	1 cut(s)	86
Bst4CI	ACNGT	1 cut(s)	184
Bst6I	CTCTTC	2 cut(s)	259, 279
BstAFI	CTTAAG	1 cut(s)	86
BstDEI	CTNAG	1 cut(s)	114
BstMAI	GTCTC	1 cut(s)	173
BstV1I	GCAGC	1 cut(s)	138
CviAII	CATG	1 cut(s)	176
CviJI	RGCY	6 cut(s)	11, 105, 129, 154, 212, 289
CviKI_1	RGCY	6 cut(s)	11, 105, 129, 154, 212, 289
DdeI	CTNAG	1 cut(s)	114
Eam1104I	CTCTTC	2 cut(s)	259, 279
EarI	CTCTTC	2 cut(s)	259, 279
Ecl136II	GAGCTC	1 cut(s)	289
Eco24I	GRGCYC	1 cut(s)	291
Eco53kI	GAGCTC	1 cut(s)	289
EcoICRI	GAGCTC	1 cut(s)	289
EcoT38I	GRGCYC	1 cut(s)	291
FaeI	CATG	1 cut(s)	179
FaiI	YATR	6 cut(s)	46, 48, 96, 98, 177, 198
FatI	CATG	1 cut(s)	175
FauNDI	CATATG	2 cut(s)	46, 96
Fnu4HI	GCNGC	1 cut(s)	127
FriOI	GRGCYC	1 cut(s)	291
Fsp4HI	GCNGC	1 cut(s)	127
FspBI	CTAG	2 cut(s)	63, 310
GluI	GCNGC	1 cut(s)	127
Hin1II	CATG	1 cut(s)	179
HinfI	GANTC	1 cut(s)	215
Hpy166II	GTNNAC	1 cut(s)	233
Hpy188I	TCNGA	1 cut(s)	286
Hpy188III	TCNNGA	1 cut(s)	113
Hpy8I	GTNNAC	1 cut(s)	233
HpyAV	CCTTC	1 cut(s)	303
HpyCH4III	ACNGT	1 cut(s)	184
HpyCH4V	TGCA	2 cut(s)	100, 179
HpyF3I	CTNAG	1 cut(s)	114
Hsp92II	CATG	1 cut(s)	179
LmnI	GCTCC	2 cut(s)	134, 294
LpnPI	CCDG	2 cut(s)	90, 126
Lsp1109I	GCAGC	1 cut(s)	138
MaeI	CTAG	2 cut(s)	63, 310
MaeIII	GTNAC	1 cut(s)	135
MboII	GAAGA	3 cut(s)	62, 246, 266
MhlI	GDGCHC	1 cut(s)	291
MluCI	AATT	3 cut(s)	193, 265, 278
MnlI	CCTC	4 cut(s)	111, 213, 262, 282
MseI	TTAA	3 cut(s)	69, 87, 264
MspCI	CTTAAG	1 cut(s)	86
NdeI	CATATG	2 cut(s)	46, 96
NlaIII	CATG	1 cut(s)	179
NmuCI	GTSAC	1 cut(s)	135
PfeI	GAWTC	1 cut(s)	215
PkrI	GCNGC	1 cut(s)	128
PshBI	ATTAAT	1 cut(s)	264
Psp124BI	GAGCTC	1 cut(s)	291
SacI	GAGCTC	1 cut(s)	291
SaqAI	TTAA	3 cut(s)	69, 87, 264
SatI	GCNGC	1 cut(s)	127
SduI	GDGCHC	1 cut(s)	291
SetI	ASST	5 cut(s)	79, 131, 205, 214, 291
SgeI	CNNG	8 cut(s)	24, 75, 89, 125, 145, 163, 188, 237
SmlI	CTYRAG	1 cut(s)	86
SmoI	CTYRAG	1 cut(s)	86
Sse9I	AATT	3 cut(s)	193, 265, 278
SspMI	CTAG	2 cut(s)	63, 310
SstI	GAGCTC	1 cut(s)	291
TaaI	ACNGT	1 cut(s)	184
TasI	AATT	3 cut(s)	193, 265, 278
TfiI	GAWTC	1 cut(s)	215
Tru1I	TTAA	3 cut(s)	69, 87, 264
Tru9I	TTAA	3 cut(s)	69, 87, 264
TseFI	GTSAC	1 cut(s)	135
TseI	GCWGC	1 cut(s)	126
Tsp45I	GTSAC	1 cut(s)	135
TspDTI	ATGAA	2 cut(s)	63, 213
Vha464I	CTTAAG	1 cut(s)	86
VspI	ATTAAT	1 cut(s)	264
XspI	CTAG	2 cut(s)	63, 310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.