Rmu_sc0000776.1_g000047

Belongs to the BI1 family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000776.1
Physical Location & Seq
Forward (+)
231969 .. 234772
2804 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000776.1_g000047.1.cds

Sequence Viewer

Length: 579 bp
atgccaagaagtgcaaaagatgccctctttacgagccatgtaccacttgaaacaaagggtcacaccactcttagtaaggataattccggcaaggtcttgcaccccggcctcagtaaaggcgagaaccagctccgttggggtttcatacgcagggtctacggcatcttatcctctcagcttctcctcatcgccaccatctccttcgtcaccgttctctacactcccatcaaggatgagatggaaatggcaaaggctggtggggaagttgtggtggagaagtctaatacatatgaagaatgtggtgctagttttaagaaacctgcgtatctcaagaagcatatgcaaagccattctcctgaggtattgtttacctgggagcttgtggatggtatttacatcggtagcagagttccaagctccagccaccgagccacctcccctttcagtgtgcctgagccaccttctctgccaccgagtcaccttcactgcaagtctatatctctgatctctgcgactccttcaaggcttcaatccctgaatcttaggccatcaaggactgggttcgtgacgaaagcatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

192

Amino Acids

21.12

Weight (kDa)

9.6

Isoelectric Point (pI)

50.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 328
AccI GTMKAC 1 cut(s) 156
AfaI GTAC 1 cut(s) 42
AgsI TTSAA 3 cut(s) 50, 522, 530
AjnI CCWGG 1 cut(s) 371
AluBI AGCT 4 cut(s) 130, 178, 379, 417
AluI AGCT 4 cut(s) 130, 178, 379, 417
AoxI GGCC 2 cut(s) 106, 545
AsuC2I CCSGG 1 cut(s) 105
AsuHPI GGTGA 2 cut(s) 199, 470
AxyI CCTNAGG 1 cut(s) 357
BaeI ACNNNNGTAYC 2 cut(s) 308, 341
BccI CCATC 5 cut(s) 203, 232, 233, 380, 556
BceAI ACGGC 1 cut(s) 175
BciT130I CCWGG 1 cut(s) 373
BcnI CCSGG 1 cut(s) 105
BfaI CTAG 1 cut(s) 306
BfuAI ACCTGC 1 cut(s) 328
Bme1390I CCNGG 2 cut(s) 105, 373
BmrFI CCNGG 2 cut(s) 105, 373
BmrI ACTGGG 1 cut(s) 567
BmsI GCATC 2 cut(s) 10, 171
BmuI ACTGGG 1 cut(s) 567
BpmI CTGGAG 1 cut(s) 403
Bpu10I CCTNAGC 1 cut(s) 453
BpuEI CTTGAG 1 cut(s) 314
BpuMI CCSGG 1 cut(s) 105
BsaJI CCNNGG 2 cut(s) 103, 372
Bse1I ACTGG 1 cut(s) 562
Bse21I CCTNAGG 1 cut(s) 357
BseBI CCWGG 1 cut(s) 373
BseDI CCNNGG 2 cut(s) 103, 372
BseGI GGATG 2 cut(s) 238, 391
BseMII CTCAG 4 cut(s) 124, 188, 348, 444
BseNI ACTGG 1 cut(s) 562
BseRI GAGGAG 1 cut(s) 173
BshFI GGCC 2 cut(s) 108, 547
BsiSI CCGG 2 cut(s) 87, 105
BsnI GGCC 2 cut(s) 108, 547
Bsp143I GATC 1 cut(s) 504
BspANI GGCC 2 cut(s) 108, 547
BspCNI CTCAG 4 cut(s) 123, 187, 349, 445
BspMI ACCTGC 1 cut(s) 328
BsrI ACTGG 1 cut(s) 562
BssECI CCNNGG 2 cut(s) 103, 372
BssMI GATC 1 cut(s) 504
Bst2UI CCWGG 1 cut(s) 373
Bst4CI ACNGT 1 cut(s) 211
BstAPI GCANNNNNTGC 1 cut(s) 20
BstDEI CTNAG 6 cut(s) 71, 110, 174, 357, 453, 542
BstF5I GGATG 2 cut(s) 238, 391
BstKTI GATC 1 cut(s) 507
BstMBI GATC 1 cut(s) 504
BstMWI GCNNNNNNNGC 1 cut(s) 20
BstNI CCWGG 1 cut(s) 373
BstSCI CCNGG 2 cut(s) 103, 371
Bsu36I CCTNAGG 1 cut(s) 357
BsuRI GGCC 2 cut(s) 108, 547
BtgZI GCGATG 1 cut(s) 172
BtsCI GGATG 2 cut(s) 238, 391
BtsI GCAGTG 1 cut(s) 484
BtsIMutI CAGTG 2 cut(s) 451, 484
BveI ACCTGC 1 cut(s) 328
Csp6I GTAC 1 cut(s) 41
CviAII CATG 1 cut(s) 38
CviQI GTAC 1 cut(s) 41
DdeI CTNAG 6 cut(s) 71, 110, 174, 357, 453, 542
DpnI GATC 1 cut(s) 506
DpnII GATC 1 cut(s) 504
Eco81I CCTNAGG 1 cut(s) 357
EcoRII CCWGG 1 cut(s) 371
FaeI CATG 1 cut(s) 41
FaiI YATR 8 cut(s) 39, 146, 289, 291, 339, 341, 497, 577
FatI CATG 1 cut(s) 37
FauNDI CATATG 2 cut(s) 289, 339
FblI GTMKAC 1 cut(s) 156
FokI GGATG 2 cut(s) 245, 398
FspBI CTAG 1 cut(s) 306
GsuI CTGGAG 1 cut(s) 403
HaeIII GGCC 2 cut(s) 108, 547
HapII CCGG 2 cut(s) 87, 105
Hin1II CATG 1 cut(s) 41
HinfI GANTC 3 cut(s) 475, 514, 538
HpaII CCGG 2 cut(s) 87, 105
HphI GGTGA 2 cut(s) 199, 470
Hpy166II GTNNAC 2 cut(s) 157, 369
Hpy188I TCNGA 1 cut(s) 504
Hpy188III TCNNGA 3 cut(s) 331, 356, 565
Hpy8I GTNNAC 2 cut(s) 157, 369
HpyAV CCTTC 4 cut(s) 211, 471, 491, 528
HpyCH4III ACNGT 1 cut(s) 211
HpyCH4V TGCA 4 cut(s) 14, 100, 343, 489
HpyF10VI GCNNNNNNNGC 1 cut(s) 20
HpyF3I CTNAG 6 cut(s) 71, 110, 174, 357, 453, 542
Hsp92II CATG 1 cut(s) 41
Kzo9I GATC 1 cut(s) 504
LmnI GCTCC 3 cut(s) 135, 376, 422
LweI GCATC 2 cut(s) 10, 171
MaeI CTAG 1 cut(s) 306
MaeIII GTNAC 4 cut(s) 59, 205, 476, 565
MalI GATC 1 cut(s) 506
MboI GATC 1 cut(s) 504
MboII GAAGA 1 cut(s) 305
MluCI AATT 1 cut(s) 82
MlyI GAGTC 2 cut(s) 484, 508
MnlI CCTC 6 cut(s) 35, 119, 181, 194, 352, 445
MseI TTAA 1 cut(s) 312
MspI CCGG 2 cut(s) 87, 105
MspR9I CCNGG 2 cut(s) 105, 373
MvaI CCWGG 1 cut(s) 373
MwoI GCNNNNNNNGC 1 cut(s) 20
NciI CCSGG 1 cut(s) 105
NdeI CATATG 2 cut(s) 289, 339
NdeII GATC 1 cut(s) 504
NlaIII CATG 1 cut(s) 41
NmuCI GTSAC 4 cut(s) 59, 205, 476, 565
PfeI GAWTC 1 cut(s) 538
PleI GAGTC 2 cut(s) 483, 508
PpsI GAGTC 2 cut(s) 483, 508
Psp6I CCWGG 1 cut(s) 371
PspGI CCWGG 1 cut(s) 371
RsaI GTAC 1 cut(s) 42
RsaNI GTAC 1 cut(s) 41
SaqAI TTAA 1 cut(s) 312
Sau3AI GATC 1 cut(s) 504
SchI GAGTC 2 cut(s) 484, 508
ScrFI CCNGG 2 cut(s) 105, 373
SfaNI GCATC 2 cut(s) 10, 171
SmlI CTYRAG 1 cut(s) 329
SmoI CTYRAG 1 cut(s) 329
Sse9I AATT 1 cut(s) 82
SspMI CTAG 1 cut(s) 306
StyD4I CCNGG 2 cut(s) 103, 371
TaaI ACNGT 1 cut(s) 211
TasI AATT 1 cut(s) 82
TfiI GAWTC 1 cut(s) 538
Tru1I TTAA 1 cut(s) 312
Tru9I TTAA 1 cut(s) 312
TscAI CASTG 2 cut(s) 451, 491
TseFI GTSAC 4 cut(s) 59, 205, 476, 565
Tsp45I GTSAC 4 cut(s) 59, 205, 476, 565
TspDTI ATGAA 2 cut(s) 133, 306
TspGWI ACGGA 1 cut(s) 122
TspRI CASTG 2 cut(s) 451, 491
XmiI GTMKAC 1 cut(s) 156
XspI CTAG 1 cut(s) 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.