Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001693

Physical Location & Seq

Genomic Coordinates Forward (+)

25069409 .. 25071177

Gene Structure 1769 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00304390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 162 bp

ATGGAAATGGCAAAGGCTAGTGAGGAAGTTGTGGTGGAGAATTCTAATACATGTGAAGAATGTGGTGCTAGTTTCAAGAAACTCGAATATCTCAAGCGGCATATGCAAAGCCATTCTCTTGAGGTAGGAGATATTGAAGGTGATGCCCCATCAGCTAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000182 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0008097 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019843 GO:0022613 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0042254 GO:0042273 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0080084 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR zf-C2H2

Protein Analysis

53

Amino Acids

5.84

Weight (kDa)

4.8

Isoelectric Point (pI)

57.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2	PF00096	17 - 38	4.5e-06	Zinc finger, C2H2 type

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001693)

Species	Orthologous Gene IDs
malus_domestica	MD15G1186700.v1.1
prunus_persica	Prupe.4G066100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0336331 RchiOBHm_Chr6g0290001 RchiOBHm_Chr7g0227531
rosa_laevigata	RLG00000002888 RLG00000019365
rosa_multiflora	Rmu_sc0000565.1_g000023 Rmu_sc0000776.1_g000047 Rmu_sc0002131.1_g000031 Rmu_sc0002701.1_g000052 Rmu_sc0003318.1_g000004 Rmu_sc0004517.1_g000008 Rmu_sc0004877.1_g000002 Rmu_sc0039095.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033520 Rroxscaffold_1G00040810 Rroxscaffold_1G00040820 Rroxscaffold_2G00107400 Rroxscaffold_2G00116610 Rroxscaffold_3G00224610 Rroxscaffold_4G00304390 Rroxscaffold_4G00304400 Rroxscaffold_4G00315830 Rroxscaffold_5G00346140 Rroxscaffold_5G00380560 Rroxscaffold_6G00389400 Rroxscaffold_7G00183550 Rroxscaffold_7G00205640
rosa_rugosa	Rorug06G0035900
rosa_samantha	Rh1AG116800 Rh2BG425100 Rh2CG611600 Rh2DG432400 Rh3CG233600 Rh4AG247700 Rh4BG058900 Rh4CG156400 Rh5AG268300 Rh5AG485100 Rh5BG239200 Rh5BG398300 Rh6CG191700 Rh7AG359900 Rh7AG382100 Rh7AG403900 Rh7CG188000 Rh7CG378300 Rh7DG395000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	97
AcsI	RAATTY	1 cut(s)	40
AflIII	ACRYGT	1 cut(s)	50
AgsI	TTSAA	2 cut(s)	76, 137
AluBI	AGCT	1 cut(s)	155
AluI	AGCT	1 cut(s)	155
ApoI	RAATTY	1 cut(s)	40
AsuHPI	GGTGA	1 cut(s)	152
BccI	CCATC	1 cut(s)	157
BfaI	CTAG	2 cut(s)	18, 69
BisI	GCNGC	1 cut(s)	98
BlsI	GCNGC	1 cut(s)	99
BmsI	GCATC	1 cut(s)	133
BpuEI	CTTGAG	2 cut(s)	77, 140
BspACI	CCGC	1 cut(s)	97
BstDEI	CTNAG	1 cut(s)	156
BstMWI	GCNNNNNNNGC	2 cut(s)	103, 152
BstNSI	RCATGY	1 cut(s)	54
CviAII	CATG	1 cut(s)	51
CviJI	RGCY	3 cut(s)	17, 111, 155
CviKI_1	RGCY	3 cut(s)	17, 111, 155
DdeI	CTNAG	1 cut(s)	156
EcoRI	GAATTC	1 cut(s)	40
FaeI	CATG	1 cut(s)	54
FaiI	YATR	3 cut(s)	52, 102, 104
FatI	CATG	1 cut(s)	50
FauNDI	CATATG	1 cut(s)	102
Fnu4HI	GCNGC	1 cut(s)	98
Fsp4HI	GCNGC	1 cut(s)	98
FspBI	CTAG	2 cut(s)	18, 69
FspEI	CC	9 cut(s)	8, 17, 20, 48, 82, 107, 111, 123, 125
GluI	GCNGC	1 cut(s)	98
Hin1II	CATG	1 cut(s)	54
HphI	GGTGA	1 cut(s)	152
Hpy188III	TCNNGA	2 cut(s)	76, 119
HpyAV	CCTTC	1 cut(s)	131
HpyCH4V	TGCA	1 cut(s)	106
HpyF10VI	GCNNNNNNNGC	2 cut(s)	103, 152
HpyF3I	CTNAG	1 cut(s)	156
Hsp92II	CATG	1 cut(s)	54
LweI	GCATC	1 cut(s)	133
MaeI	CTAG	2 cut(s)	18, 69
MboII	GAAGA	1 cut(s)	68
MluCI	AATT	1 cut(s)	40
MnlI	CCTC	2 cut(s)	16, 115
MwoI	GCNNNNNNNGC	2 cut(s)	103, 152
NdeI	CATATG	1 cut(s)	102
NlaIII	CATG	1 cut(s)	54
NspI	RCATGY	1 cut(s)	54
PciI	ACATGT	1 cut(s)	50
PkrI	GCNGC	1 cut(s)	99
PscI	ACATGT	1 cut(s)	50
SatI	GCNGC	1 cut(s)	98
SetI	ASST	3 cut(s)	126, 142, 157
SfaNI	GCATC	1 cut(s)	133
SgeI	CNNG	7 cut(s)	30, 63, 81, 88, 95, 106, 131
SmlI	CTYRAG	2 cut(s)	92, 119
SmoI	CTYRAG	2 cut(s)	92, 119
Sse9I	AATT	1 cut(s)	40
SsiI	CCGC	1 cut(s)	97
SspMI	CTAG	2 cut(s)	18, 69
TaqI	TCGA	1 cut(s)	84
TasI	AATT	1 cut(s)	40
TauI	GCSGC	1 cut(s)	100
XapI	RAATTY	1 cut(s)	40
XceI	RCATGY	1 cut(s)	54
XspI	CTAG	2 cut(s)	18, 69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.