Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0001693

Physical Location & Seq

Genomic Coordinates Forward (+)

53353580 .. 53355600

Gene Structure 2021 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG403900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGAGGAAGCTGAAGCCGAGACGGAGGTGCCTACTTTCAGGGACATTAGGCGCTATTACTGCGATTACTGTGGCATCTGCCGGTCCAAAAAGTCCCTCATTGCTTCTCACGTCCTCACCCACCACAAGGACGAGAGGGATATGGCCGAGGCTAATGGAGATGGCGATTCAGAAGTTGAGAGAGGAAAGTCCAATACTTGCCAGGAATGTGGGCTTAGTTTCAAAAAACCTGCACATCTCAAGCAACATATGCAGAGTCATTCCCTCGAGTTTGGGGATATGAGAATAAAGGCTTTCCCTGAGGCACCAATGGCATCCGCCAACAAACAAGTCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000182 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0008097 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019843 GO:0022613 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0042254 GO:0042273 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0080084 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR zf-C2H2

Protein Analysis

112

Amino Acids

12.74

Weight (kDa)

6.05

Isoelectric Point (pI)

46.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001693)

Species	Orthologous Gene IDs
malus_domestica	MD15G1186700.v1.1
prunus_persica	Prupe.4G066100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0336331 RchiOBHm_Chr6g0290001 RchiOBHm_Chr7g0227531
rosa_laevigata	RLG00000002888 RLG00000019365
rosa_multiflora	Rmu_sc0000565.1_g000023 Rmu_sc0000776.1_g000047 Rmu_sc0002131.1_g000031 Rmu_sc0002701.1_g000052 Rmu_sc0003318.1_g000004 Rmu_sc0004517.1_g000008 Rmu_sc0004877.1_g000002 Rmu_sc0039095.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033520 Rroxscaffold_1G00040810 Rroxscaffold_1G00040820 Rroxscaffold_2G00107400 Rroxscaffold_2G00116610 Rroxscaffold_3G00224610 Rroxscaffold_4G00304390 Rroxscaffold_4G00304400 Rroxscaffold_4G00315830 Rroxscaffold_5G00346140 Rroxscaffold_5G00380560 Rroxscaffold_6G00389400 Rroxscaffold_7G00183550 Rroxscaffold_7G00205640
rosa_rugosa	Rorug06G0035900
rosa_samantha	Rh1AG116800 Rh2BG425100 Rh2CG611600 Rh2DG432400 Rh3CG233600 Rh4AG247700 Rh4BG058900 Rh4CG156400 Rh5AG268300 Rh5AG485100 Rh5BG239200 Rh5BG398300 Rh6CG191700 Rh7AG359900 Rh7AG382100 Rh7AG403900 Rh7CG188000 Rh7CG378300 Rh7DG395000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	238
AccB1I	GGYRCC	2 cut(s)	28, 304
AciI	CCGC	1 cut(s)	318
AcoI	YGGCCR	1 cut(s)	144
AcuI	CTGAAG	1 cut(s)	33
AfiI	CCNNNNNNNGG	1 cut(s)	127
AgsI	TTSAA	1 cut(s)	223
AjiI	CACGTC	1 cut(s)	112
AjnI	CCWGG	1 cut(s)	201
AluBI	AGCT	1 cut(s)	11
AluI	AGCT	1 cut(s)	11
Alw26I	GTCTC	1 cut(s)	14
Ama87I	CYCGRG	1 cut(s)	266
AoxI	GGCC	1 cut(s)	144
AspLEI	GCGC	1 cut(s)	54
AspS9I	GGNCC	1 cut(s)	84
AsuHPI	GGTGA	1 cut(s)	109
AvaI	CYCGRG	1 cut(s)	266
AvaII	GGWCC	1 cut(s)	84
AxyI	CCTNAGG	1 cut(s)	300
BanI	GGYRCC	2 cut(s)	28, 304
BccI	CCATC	1 cut(s)	155
BciT130I	CCWGG	1 cut(s)	203
BcoDI	GTCTC	1 cut(s)	14
BfoI	RGCGCY	1 cut(s)	55
BfuAI	ACCTGC	1 cut(s)	238
Bme1390I	CCNGG	1 cut(s)	203
Bme18I	GGWCC	1 cut(s)	84
BmeT110I	CYCGRG	1 cut(s)	266
BmgBI	CACGTC	1 cut(s)	112
BmgT120I	GGNCC	1 cut(s)	84
BmiI	GGNNCC	2 cut(s)	30, 306
BmrFI	CCNGG	1 cut(s)	203
BmsI	GCATC	2 cut(s)	84, 323
BpuEI	CTTGAG	1 cut(s)	224
BsaJI	CCNNGG	1 cut(s)	147
Bsc4I	CCNNNNNNNGG	1 cut(s)	127
Bse118I	RCCGGY	1 cut(s)	81
Bse21I	CCTNAGG	1 cut(s)	300
Bse3DI	GCAATG	1 cut(s)	99
BseBI	CCWGG	1 cut(s)	203
BseDI	CCNNGG	1 cut(s)	147
BseGI	GGATG	1 cut(s)	314
BseLI	CCNNNNNNNGG	1 cut(s)	127
BseMI	GCAATG	1 cut(s)	99
BseMII	CTCAG	1 cut(s)	291
BsgI	GTGCAG	1 cut(s)	216
BshFI	GGCC	1 cut(s)	146
BshNI	GGYRCC	2 cut(s)	28, 304
BsiHKCI	CYCGRG	1 cut(s)	266
BsiSI	CCGG	1 cut(s)	82
BslFI	GGGAC	2 cut(s)	56, 79
BslI	CCNNNNNNNGG	1 cut(s)	127
BsmAI	GTCTC	1 cut(s)	14
BsmBI	CGTCTC	1 cut(s)	14
BsmFI	GGGAC	2 cut(s)	56, 79
BsnI	GGCC	1 cut(s)	146
BsoBI	CYCGRG	1 cut(s)	266
BspACI	CCGC	1 cut(s)	318
BspANI	GGCC	1 cut(s)	146
BspCNI	CTCAG	1 cut(s)	292
BspLI	GGNNCC	2 cut(s)	30, 306
BspMI	ACCTGC	1 cut(s)	238
BspT107I	GGYRCC	2 cut(s)	28, 304
BsrDI	GCAATG	1 cut(s)	99
BsrFI	RCCGGY	1 cut(s)	81
BssAI	RCCGGY	1 cut(s)	81
BssECI	CCNNGG	1 cut(s)	147
Bst2UI	CCWGG	1 cut(s)	203
Bst4CI	ACNGT	1 cut(s)	71
BstAPI	GCANNNNNTGC	1 cut(s)	250
BstDEI	CTNAG	2 cut(s)	215, 300
BstF5I	GGATG	1 cut(s)	314
BstH2I	RGCGCY	1 cut(s)	55
BstHHI	GCGC	1 cut(s)	54
BstMAI	GTCTC	1 cut(s)	14
BstMWI	GCNNNNNNNGC	3 cut(s)	60, 250, 311
BstNI	CCWGG	1 cut(s)	203
BstSCI	CCNGG	1 cut(s)	201
BstXI	CCANNNNNNTGG	1 cut(s)	209
Bsu36I	CCTNAGG	1 cut(s)	300
BsuRI	GGCC	1 cut(s)	146
BtrI	CACGTC	1 cut(s)	112
BtsCI	GGATG	1 cut(s)	314
BveI	ACCTGC	1 cut(s)	238
CfoI	GCGC	1 cut(s)	54
Cfr10I	RCCGGY	1 cut(s)	81
Cfr13I	GGNCC	1 cut(s)	84
CviJI	RGCY	6 cut(s)	11, 17, 146, 152, 214, 293
CviKI_1	RGCY	6 cut(s)	11, 17, 146, 152, 214, 293
DdeI	CTNAG	2 cut(s)	215, 300
EaeI	YGGCCR	1 cut(s)	144
EciI	GGCGGA	1 cut(s)	307
Eco47I	GGWCC	1 cut(s)	84
Eco57I	CTGAAG	1 cut(s)	33
Eco81I	CCTNAGG	1 cut(s)	300
Eco88I	CYCGRG	1 cut(s)	266
EcoRII	CCWGG	1 cut(s)	201
Esp3I	CGTCTC	1 cut(s)	14
FaiI	YATR	4 cut(s)	143, 249, 251, 281
FaqI	GGGAC	2 cut(s)	56, 79
FauNDI	CATATG	1 cut(s)	249
FokI	GGATG	1 cut(s)	301
GlaI	GCGC	1 cut(s)	53
HaeII	RGCGCY	1 cut(s)	55
HaeIII	GGCC	1 cut(s)	146
HapII	CCGG	1 cut(s)	82
HhaI	GCGC	1 cut(s)	54
Hin6I	GCGC	1 cut(s)	52
HinP1I	GCGC	1 cut(s)	52
HinfI	GANTC	2 cut(s)	167, 256
HpaII	CCGG	1 cut(s)	82
HphI	GGTGA	1 cut(s)	109
Hpy188I	TCNGA	1 cut(s)	172
HpyCH4III	ACNGT	1 cut(s)	71
HpyCH4IV	ACGT	1 cut(s)	111
HpyCH4V	TGCA	2 cut(s)	233, 253
HpyF10VI	GCNNNNNNNGC	3 cut(s)	60, 250, 311
HpyF3I	CTNAG	2 cut(s)	215, 300
HpySE526I	ACGT	1 cut(s)	111
HspAI	GCGC	1 cut(s)	52
LpnPI	CCDG	6 cut(s)	25, 95, 188, 215, 243, 312
LweI	GCATC	2 cut(s)	84, 323
MaeII	ACGT	1 cut(s)	111
MlyI	GAGTC	1 cut(s)	265
MnlI	CCTC	8 cut(s)	19, 107, 125, 129, 142, 176, 275, 295
MspI	CCGG	1 cut(s)	82
MspR9I	CCNGG	1 cut(s)	203
MvaI	CCWGG	1 cut(s)	203
MwoI	GCNNNNNNNGC	3 cut(s)	60, 250, 311
NdeI	CATATG	1 cut(s)	249
NlaIV	GGNNCC	2 cut(s)	30, 306
NmeAIII	GCCGAG	2 cut(s)	43, 172
PaeR7I	CTCGAG	1 cut(s)	266
PfeI	GAWTC	1 cut(s)	167
PleI	GAGTC	1 cut(s)	264
PpsI	GAGTC	1 cut(s)	264
Psp6I	CCWGG	1 cut(s)	201
PspGI	CCWGG	1 cut(s)	201
PspN4I	GGNNCC	2 cut(s)	30, 306
PspPI	GGNCC	1 cut(s)	84
PspXI	VCTCGAGB	1 cut(s)	266
Sau96I	GGNCC	1 cut(s)	84
SchI	GAGTC	1 cut(s)	265
ScrFI	CCNGG	1 cut(s)	203
SetI	ASST	4 cut(s)	13, 30, 114, 232
SfaNI	GCATC	2 cut(s)	84, 323
Sfr274I	CTCGAG	1 cut(s)	266
SinI	GGWCC	1 cut(s)	84
SlaI	CTCGAG	1 cut(s)	266
SmlI	CTYRAG	2 cut(s)	239, 266
SmoI	CTYRAG	2 cut(s)	239, 266
SsiI	CCGC	1 cut(s)	318
StyD4I	CCNGG	1 cut(s)	201
TaaI	ACNGT	1 cut(s)	71
TaiI	ACGT	1 cut(s)	114
TaqI	TCGA	1 cut(s)	267
TfiI	GAWTC	1 cut(s)	167
TspGWI	ACGGA	1 cut(s)	38
VpaK11BI	GGWCC	1 cut(s)	84
XhoI	CTCGAG	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.