Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001693

Physical Location & Seq

Genomic Coordinates Reverse (-)

60735764 .. 60737905

Gene Structure 2142 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00380560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGAACACGATGCACTACATGGAGGTGAACACCACCGGCGCTACCGACAAGCTCAACGAGGTCGACATCGAGTCCGGCGAGGTCTTGTACCCCGCCCTCTCGCAAAGGCGTGAACCAGCAAGGTCTCCGCGCATCTTATCCGCTCGGCCTTCTCCTCACCACCGCCATCTCCTTCGTCACCGTTCTCTACACTTCTGTCAAGGTTTGGTTTGGACAATTAAAGTTGATGAGATGGAAATGGCAAAGGCTAGTGAGGAAGTTGTGGTGGAGAATTCTAATACATGTGAAGAATGTGGTGCTAGTTTCAAGAAACCCGAATATCTCAAGCAGCATATCCAAAGCCATTCTCTCGAGGTAGGAGATATTGAAGGTGATGCCCCATCACCTAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000182 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0008097 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019843 GO:0022613 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0042254 GO:0042273 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0080084 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR zf-C2H2

Protein Analysis

130

Amino Acids

14.72

Weight (kDa)

5.88

Isoelectric Point (pI)

74.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001693)

Species	Orthologous Gene IDs
malus_domestica	MD15G1186700.v1.1
prunus_persica	Prupe.4G066100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0336331 RchiOBHm_Chr6g0290001 RchiOBHm_Chr7g0227531
rosa_laevigata	RLG00000002888 RLG00000019365
rosa_multiflora	Rmu_sc0000565.1_g000023 Rmu_sc0000776.1_g000047 Rmu_sc0002131.1_g000031 Rmu_sc0002701.1_g000052 Rmu_sc0003318.1_g000004 Rmu_sc0004517.1_g000008 Rmu_sc0004877.1_g000002 Rmu_sc0039095.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033520 Rroxscaffold_1G00040810 Rroxscaffold_1G00040820 Rroxscaffold_2G00107400 Rroxscaffold_2G00116610 Rroxscaffold_3G00224610 Rroxscaffold_4G00304390 Rroxscaffold_4G00304400 Rroxscaffold_4G00315830 Rroxscaffold_5G00346140 Rroxscaffold_5G00380560 Rroxscaffold_6G00389400 Rroxscaffold_7G00183550 Rroxscaffold_7G00205640
rosa_rugosa	Rorug06G0035900
rosa_samantha	Rh1AG116800 Rh2BG425100 Rh2CG611600 Rh2DG432400 Rh3CG233600 Rh4AG247700 Rh4BG058900 Rh4CG156400 Rh5AG268300 Rh5AG485100 Rh5BG239200 Rh5BG398300 Rh6CG191700 Rh7AG359900 Rh7AG382100 Rh7AG403900 Rh7CG188000 Rh7CG378300 Rh7DG395000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	143
AccI	GTMKAC	1 cut(s)	63
AccII	CGCG	1 cut(s)	130
AciI	CCGC	4 cut(s)	93, 128, 141, 163
AcsI	RAATTY	1 cut(s)	271
AfaI	GTAC	1 cut(s)	89
AflIII	ACRYGT	1 cut(s)	281
AgsI	TTSAA	2 cut(s)	307, 368
AhdI	GACNNNNNGTC	1 cut(s)	70
AleI	CACNNNNGTG	1 cut(s)	388
AluBI	AGCT	1 cut(s)	52
AluI	AGCT	1 cut(s)	52
Alw26I	GTCTC	1 cut(s)	129
Ama87I	CYCGRG	1 cut(s)	350
AoxI	GGCC	1 cut(s)	146
ApeKI	GCWGC	1 cut(s)	328
ApoI	RAATTY	1 cut(s)	271
AspLEI	GCGC	2 cut(s)	41, 132
AsuHPI	GGTGA	5 cut(s)	37, 149, 170, 375, 383
AvaI	CYCGRG	1 cut(s)	350
BbvI	GCAGC	1 cut(s)	340
BccI	CCATC	3 cut(s)	174, 226, 388
BcoDI	GTCTC	1 cut(s)	129
BfaI	CTAG	2 cut(s)	249, 300
BfoI	RGCGCY	1 cut(s)	42
BisI	GCNGC	1 cut(s)	329
BlsI	GCNGC	1 cut(s)	330
BmeRI	GACNNNNNGTC	1 cut(s)	70
BmeT110I	CYCGRG	1 cut(s)	350
BmsI	GCATC	2 cut(s)	141, 364
BpuEI	CTTGAG	1 cut(s)	308
BsaI	GGTCTC	1 cut(s)	129
Bse118I	RCCGGY	1 cut(s)	35
BseRI	GAGGAG	1 cut(s)	144
BseXI	GCAGC	1 cut(s)	340
Bsh1236I	CGCG	1 cut(s)	130
BshFI	GGCC	1 cut(s)	148
BsiHKCI	CYCGRG	1 cut(s)	350
BsiSI	CCGG	2 cut(s)	36, 75
BsmAI	GTCTC	1 cut(s)	129
BsnI	GGCC	1 cut(s)	148
Bso31I	GGTCTC	1 cut(s)	129
BsoBI	CYCGRG	1 cut(s)	350
BspACI	CCGC	4 cut(s)	93, 128, 141, 163
BspANI	GGCC	1 cut(s)	148
BspFNI	CGCG	1 cut(s)	130
BspTNI	GGTCTC	1 cut(s)	129
BsrBI	CCGCTC	1 cut(s)	143
BsrFI	RCCGGY	1 cut(s)	35
BssAI	RCCGGY	1 cut(s)	35
Bst4CI	ACNGT	1 cut(s)	182
BstDEI	CTNAG	1 cut(s)	387
BstFNI	CGCG	1 cut(s)	130
BstH2I	RGCGCY	1 cut(s)	42
BstHHI	GCGC	2 cut(s)	41, 132
BstMAI	GTCTC	1 cut(s)	129
BstNSI	RCATGY	1 cut(s)	285
BstUI	CGCG	1 cut(s)	130
BstV1I	GCAGC	1 cut(s)	340
BsuRI	GGCC	1 cut(s)	148
CfoI	GCGC	2 cut(s)	41, 132
Cfr10I	RCCGGY	1 cut(s)	35
Csp6I	GTAC	1 cut(s)	88
CviAII	CATG	2 cut(s)	19, 282
CviJI	RGCY	4 cut(s)	52, 148, 248, 342
CviKI_1	RGCY	4 cut(s)	52, 148, 248, 342
CviQI	GTAC	1 cut(s)	88
DdeI	CTNAG	1 cut(s)	387
DriI	GACNNNNNGTC	1 cut(s)	70
Eam1105I	GACNNNNNGTC	1 cut(s)	70
Eco31I	GGTCTC	1 cut(s)	129
Eco88I	CYCGRG	1 cut(s)	350
EcoRI	GAATTC	1 cut(s)	271
FaeI	CATG	2 cut(s)	22, 285
FaiI	YATR	3 cut(s)	20, 283, 333
FatI	CATG	2 cut(s)	18, 281
FauI	CCCGC	1 cut(s)	100
FblI	GTMKAC	1 cut(s)	63
Fnu4HI	GCNGC	1 cut(s)	329
Fsp4HI	GCNGC	1 cut(s)	329
FspBI	CTAG	2 cut(s)	249, 300
GlaI	GCGC	2 cut(s)	40, 131
GluI	GCNGC	1 cut(s)	329
HaeII	RGCGCY	1 cut(s)	42
HaeIII	GGCC	1 cut(s)	148
HapII	CCGG	2 cut(s)	36, 75
HhaI	GCGC	2 cut(s)	41, 132
Hin1II	CATG	2 cut(s)	22, 285
Hin6I	GCGC	2 cut(s)	39, 130
HinP1I	GCGC	2 cut(s)	39, 130
HincII	GTYRAC	1 cut(s)	64
HindII	GTYRAC	1 cut(s)	64
HinfI	GANTC	1 cut(s)	71
HpaII	CCGG	2 cut(s)	36, 75
HphI	GGTGA	5 cut(s)	37, 149, 170, 375, 383
Hpy166II	GTNNAC	3 cut(s)	28, 64, 113
Hpy188III	TCNNGA	2 cut(s)	307, 350
Hpy8I	GTNNAC	3 cut(s)	28, 64, 113
HpyAV	CCTTC	3 cut(s)	159, 182, 362
HpyCH4III	ACNGT	1 cut(s)	182
HpyCH4V	TGCA	1 cut(s)	13
HpyF3I	CTNAG	1 cut(s)	387
Hsp92II	CATG	2 cut(s)	22, 285
HspAI	GCGC	2 cut(s)	39, 130
LpnPI	CCDG	3 cut(s)	49, 88, 129
Lsp1109I	GCAGC	1 cut(s)	340
LweI	GCATC	2 cut(s)	141, 364
MaeI	CTAG	2 cut(s)	249, 300
MaeIII	GTNAC	1 cut(s)	176
MbiI	CCGCTC	1 cut(s)	143
MboII	GAAGA	1 cut(s)	299
MluCI	AATT	2 cut(s)	216, 271
MlyI	GAGTC	1 cut(s)	80
MnlI	CCTC	7 cut(s)	16, 52, 73, 107, 165, 247, 346
MseI	TTAA	1 cut(s)	219
MslI	CAYNNNNRTG	2 cut(s)	23, 388
MspI	CCGG	2 cut(s)	36, 75
MvnI	CGCG	1 cut(s)	130
NlaIII	CATG	2 cut(s)	22, 285
NmeAIII	GCCGAG	1 cut(s)	124
NmuCI	GTSAC	1 cut(s)	176
NspI	RCATGY	1 cut(s)	285
OliI	CACNNNNGTG	1 cut(s)	388
PaeR7I	CTCGAG	1 cut(s)	350
PciI	ACATGT	1 cut(s)	281
PcsI	WCGNNNNNNNCGW	1 cut(s)	75
PkrI	GCNGC	1 cut(s)	330
PleI	GAGTC	1 cut(s)	79
PpsI	GAGTC	1 cut(s)	79
PscI	ACATGT	1 cut(s)	281
RsaI	GTAC	1 cut(s)	89
RsaNI	GTAC	1 cut(s)	88
RseI	CAYNNNNRTG	2 cut(s)	23, 388
SalI	GTCGAC	1 cut(s)	62
SaqAI	TTAA	1 cut(s)	219
SatI	GCNGC	1 cut(s)	329
SchI	GAGTC	1 cut(s)	80
SetI	ASST	9 cut(s)	27, 54, 63, 84, 125, 205, 357, 373, 388
SfaNI	GCATC	2 cut(s)	141, 364
Sfr274I	CTCGAG	1 cut(s)	350
SgrAI	CRCCGGYG	1 cut(s)	35
SlaI	CTCGAG	1 cut(s)	350
SmiMI	CAYNNNNRTG	2 cut(s)	23, 388
SmlI	CTYRAG	2 cut(s)	323, 350
SmoI	CTYRAG	2 cut(s)	323, 350
Sse9I	AATT	2 cut(s)	216, 271
SsiI	CCGC	4 cut(s)	93, 128, 141, 163
SspMI	CTAG	2 cut(s)	249, 300
TaaI	ACNGT	1 cut(s)	182
TaqI	TCGA	3 cut(s)	63, 69, 351
TasI	AATT	2 cut(s)	216, 271
Tru1I	TTAA	1 cut(s)	219
Tru9I	TTAA	1 cut(s)	219
TseFI	GTSAC	1 cut(s)	176
TseI	GCWGC	1 cut(s)	328
Tsp45I	GTSAC	1 cut(s)	176
TspDTI	ATGAA	1 cut(s)	17
XapI	RAATTY	1 cut(s)	271
XceI	RCATGY	1 cut(s)	285
XhoI	CTCGAG	1 cut(s)	350
XmiI	GTMKAC	1 cut(s)	63
XspI	CTAG	2 cut(s)	249, 300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.