Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0001693

Physical Location & Seq

Genomic Coordinates Reverse (-)

47613825 .. 47614475

Gene Structure 651 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG378300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGAACACGATGCACTGCATAGAGGTCTACGGCATCTTATCCTCTCAGCTTCTCCTCACCGCCACCATCTCCTTCGTCACCGTTCTCTACACTCCCATCAAGGATGAGATGGAAATGGCAAAGGCTGGTGGGAAAGTTGTGGTGGAGAAGTCTAATACATGTGAAGAATGTGGTGCTAGTTTTAAGAAACCTGCGTATCTCAAGAAGCATATGCAAAGCCATTCTCCTGAGAAGGAAAAGTATCTGATTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000182 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0008097 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019843 GO:0022613 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0042254 GO:0042273 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0080084 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR zf-C2H2

Protein Analysis

84

Amino Acids

9.37

Weight (kDa)

7.72

Isoelectric Point (pI)

40.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2	PF00096	53 - 74	5.6e-06	Zinc finger, C2H2 type

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001693)

Species	Orthologous Gene IDs
malus_domestica	MD15G1186700.v1.1
prunus_persica	Prupe.4G066100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0336331 RchiOBHm_Chr6g0290001 RchiOBHm_Chr7g0227531
rosa_laevigata	RLG00000002888 RLG00000019365
rosa_multiflora	Rmu_sc0000565.1_g000023 Rmu_sc0000776.1_g000047 Rmu_sc0002131.1_g000031 Rmu_sc0002701.1_g000052 Rmu_sc0003318.1_g000004 Rmu_sc0004517.1_g000008 Rmu_sc0004877.1_g000002 Rmu_sc0039095.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033520 Rroxscaffold_1G00040810 Rroxscaffold_1G00040820 Rroxscaffold_2G00107400 Rroxscaffold_2G00116610 Rroxscaffold_3G00224610 Rroxscaffold_4G00304390 Rroxscaffold_4G00304400 Rroxscaffold_4G00315830 Rroxscaffold_5G00346140 Rroxscaffold_5G00380560 Rroxscaffold_6G00389400 Rroxscaffold_7G00183550 Rroxscaffold_7G00205640
rosa_rugosa	Rorug06G0035900
rosa_samantha	Rh1AG116800 Rh2BG425100 Rh2CG611600 Rh2DG432400 Rh3CG233600 Rh4AG247700 Rh4BG058900 Rh4CG156400 Rh5AG268300 Rh5AG485100 Rh5BG239200 Rh5BG398300 Rh6CG191700 Rh7AG359900 Rh7AG382100 Rh7AG403900 Rh7CG188000 Rh7CG378300 Rh7DG395000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	199
AccI	GTMKAC	1 cut(s)	27
AciI	CCGC	1 cut(s)	60
AflIII	ACRYGT	1 cut(s)	158
AluBI	AGCT	1 cut(s)	49
AluI	AGCT	1 cut(s)	49
AsuHPI	GGTGA	2 cut(s)	49, 70
BaeI	ACNNNNGTAYC	2 cut(s)	179, 212
BccI	CCATC	3 cut(s)	74, 103, 104
BceAI	ACGGC	1 cut(s)	46
BfaI	CTAG	1 cut(s)	177
BfuAI	ACCTGC	1 cut(s)	199
BmsI	GCATC	1 cut(s)	42
BpuEI	CTTGAG	1 cut(s)	185
BseGI	GGATG	1 cut(s)	109
BseMII	CTCAG	2 cut(s)	59, 219
BseRI	GAGGAG	1 cut(s)	44
BspACI	CCGC	1 cut(s)	60
BspCNI	CTCAG	2 cut(s)	58, 220
BspMI	ACCTGC	1 cut(s)	199
Bst4CI	ACNGT	1 cut(s)	82
BstDEI	CTNAG	2 cut(s)	45, 228
BstF5I	GGATG	1 cut(s)	109
BstNSI	RCATGY	1 cut(s)	162
BtsCI	GGATG	1 cut(s)	109
BtsI	GCAGTG	1 cut(s)	13
BtsIMutI	CAGTG	1 cut(s)	13
BveI	ACCTGC	1 cut(s)	199
CviAII	CATG	1 cut(s)	159
CviJI	RGCY	3 cut(s)	49, 125, 219
CviKI_1	RGCY	3 cut(s)	49, 125, 219
DdeI	CTNAG	2 cut(s)	45, 228
FaeI	CATG	1 cut(s)	162
FaiI	YATR	4 cut(s)	20, 160, 210, 212
FatI	CATG	1 cut(s)	158
FauNDI	CATATG	1 cut(s)	210
FblI	GTMKAC	1 cut(s)	27
FokI	GGATG	1 cut(s)	116
FspBI	CTAG	1 cut(s)	177
Hin1II	CATG	1 cut(s)	162
HphI	GGTGA	2 cut(s)	49, 70
Hpy166II	GTNNAC	1 cut(s)	28
Hpy188I	TCNGA	1 cut(s)	246
Hpy188III	TCNNGA	2 cut(s)	202, 227
Hpy8I	GTNNAC	1 cut(s)	28
HpyAV	CCTTC	2 cut(s)	82, 226
HpyCH4III	ACNGT	1 cut(s)	82
HpyCH4V	TGCA	3 cut(s)	13, 18, 214
HpyF3I	CTNAG	2 cut(s)	45, 228
Hsp92II	CATG	1 cut(s)	162
LpnPI	CCDG	3 cut(s)	111, 204, 240
LweI	GCATC	1 cut(s)	42
MaeI	CTAG	1 cut(s)	177
MaeIII	GTNAC	1 cut(s)	76
MboII	GAAGA	1 cut(s)	176
MnlI	CCTC	3 cut(s)	16, 52, 65
MseI	TTAA	1 cut(s)	183
NdeI	CATATG	1 cut(s)	210
NlaIII	CATG	1 cut(s)	162
NmuCI	GTSAC	1 cut(s)	76
NspI	RCATGY	1 cut(s)	162
PciI	ACATGT	1 cut(s)	158
PscI	ACATGT	1 cut(s)	158
SaqAI	TTAA	1 cut(s)	183
SetI	ASST	3 cut(s)	27, 51, 193
SfaNI	GCATC	1 cut(s)	42
SgeI	CNNG	8 cut(s)	19, 112, 138, 171, 189, 203, 214, 239
SmlI	CTYRAG	1 cut(s)	200
SmoI	CTYRAG	1 cut(s)	200
SsiI	CCGC	1 cut(s)	60
SspMI	CTAG	1 cut(s)	177
TaaI	ACNGT	1 cut(s)	82
Tru1I	TTAA	1 cut(s)	183
Tru9I	TTAA	1 cut(s)	183
TscAI	CASTG	1 cut(s)	20
TseFI	GTSAC	1 cut(s)	76
Tsp45I	GTSAC	1 cut(s)	76
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	20
XceI	RCATGY	1 cut(s)	162
XmiI	GTMKAC	1 cut(s)	27
XspI	CTAG	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.