Rroxscaffold_7G00183550

Belongs to the BI1 family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Reverse (-)
22634482 .. 22634979
498 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00183550.1

Sequence Viewer

Length: 339 bp
ATGAACACGATGCACCGCATAGAGGTGAGCACCACCGGCAAGCTCAACGAGGTCGACATCGAGTCCGGCGAGGTCTTATACCCCCGCCTTAGTAAAGGCGAGAACCGGCTCCGTTGGGGTTTCATACGCAAGGTCTACGACATCTTATCCTCTCGGCTTCTCCTCACCACCGCCATCTCCTTTGTCACCATTCTCTACACTCCAGTCAAGGATGAGATGGAAATGGCAAAGGCTGGTGGGGAAGTTGTGGTGGAGAAGTCTAATACACGTGAAGAATGTGGTGCTAGTTTCAAGAAACCTCGCGTATCTCAAGAAGCATATGCAAAGCCATTCTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

112

Amino Acids

12.68

Weight (kDa)

8.73

Isoelectric Point (pI)

42.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 54, 135
AccII CGCG 1 cut(s) 303
AciI CCGC 3 cut(s) 16, 85, 171
AcvI CACGTG 1 cut(s) 269
AfiI CCNNNNNNNGG 1 cut(s) 22
AflIII ACRYGT 1 cut(s) 266
AgsI TTSAA 1 cut(s) 292
AhdI GACNNNNNGTC 1 cut(s) 61
AluBI AGCT 1 cut(s) 43
AluI AGCT 1 cut(s) 43
Alw21I GWGCWC 1 cut(s) 32
AsuHPI GGTGA 3 cut(s) 37, 157, 178
BbrPI CACGTG 1 cut(s) 269
Bbv12I GWGCWC 1 cut(s) 32
BccI CCATC 2 cut(s) 182, 211
BfaI CTAG 1 cut(s) 285
BmeRI GACNNNNNGTC 1 cut(s) 61
BmiI GGNNCC 1 cut(s) 110
BpmI CTGGAG 1 cut(s) 186
BpuEI CTTGAG 1 cut(s) 294
BsaAI YACGTR 1 cut(s) 269
Bsc4I CCNNNNNNNGG 1 cut(s) 22
Bse118I RCCGGY 2 cut(s) 35, 105
Bse1I ACTGG 1 cut(s) 203
BseGI GGATG 1 cut(s) 217
BseLI CCNNNNNNNGG 1 cut(s) 22
BseNI ACTGG 1 cut(s) 203
BseRI GAGGAG 1 cut(s) 152
Bsh1236I CGCG 1 cut(s) 303
BsiHKAI GWGCWC 1 cut(s) 32
BsiSI CCGG 3 cut(s) 36, 66, 106
BslI CCNNNNNNNGG 1 cut(s) 22
Bsp1286I GDGCHC 1 cut(s) 32
BspACI CCGC 3 cut(s) 16, 85, 171
BspFNI CGCG 1 cut(s) 303
BspLI GGNNCC 1 cut(s) 110
BsrFI RCCGGY 2 cut(s) 35, 105
BsrI ACTGG 1 cut(s) 203
BssAI RCCGGY 2 cut(s) 35, 105
BstBAI YACGTR 1 cut(s) 269
BstC8I GCNNGC 1 cut(s) 41
BstDEI CTNAG 1 cut(s) 89
BstF5I GGATG 1 cut(s) 217
BstFNI CGCG 1 cut(s) 303
BstMWI GCNNNNNNNGC 1 cut(s) 36
BstUI CGCG 1 cut(s) 303
BtsCI GGATG 1 cut(s) 217
Cac8I GCNNGC 1 cut(s) 41
Cfr10I RCCGGY 2 cut(s) 35, 105
CviJI RGCY 5 cut(s) 43, 109, 157, 233, 328
CviKI_1 RGCY 5 cut(s) 43, 109, 157, 233, 328
DdeI CTNAG 1 cut(s) 89
DriI GACNNNNNGTC 1 cut(s) 61
Eam1105I GACNNNNNGTC 1 cut(s) 61
Eco72I CACGTG 1 cut(s) 269
FaiI YATR 5 cut(s) 20, 79, 125, 319, 321
FauI CCCGC 1 cut(s) 92
FauNDI CATATG 1 cut(s) 319
FblI GTMKAC 2 cut(s) 54, 135
FokI GGATG 1 cut(s) 224
FspBI CTAG 1 cut(s) 285
GsuI CTGGAG 1 cut(s) 186
HapII CCGG 3 cut(s) 36, 66, 106
HincII GTYRAC 1 cut(s) 55
HindII GTYRAC 1 cut(s) 55
HinfI GANTC 1 cut(s) 62
HpaII CCGG 3 cut(s) 36, 66, 106
HphI GGTGA 3 cut(s) 37, 157, 178
Hpy166II GTNNAC 2 cut(s) 55, 136
Hpy188III TCNNGA 2 cut(s) 292, 311
Hpy8I GTNNAC 2 cut(s) 55, 136
HpyCH4IV ACGT 1 cut(s) 268
HpyCH4V TGCA 2 cut(s) 13, 323
HpyF10VI GCNNNNNNNGC 1 cut(s) 36
HpyF3I CTNAG 1 cut(s) 89
HpySE526I ACGT 1 cut(s) 268
LmnI GCTCC 1 cut(s) 114
LpnPI CCDG 5 cut(s) 49, 79, 119, 216, 219
MaeI CTAG 1 cut(s) 285
MaeII ACGT 1 cut(s) 268
MaeIII GTNAC 1 cut(s) 184
MboII GAAGA 1 cut(s) 284
MhlI GDGCHC 1 cut(s) 32
MlyI GAGTC 1 cut(s) 71
MnlI CCTC 6 cut(s) 16, 43, 64, 160, 173, 309
MslI CAYNNNNRTG 1 cut(s) 23
MspI CCGG 3 cut(s) 36, 66, 106
MvnI CGCG 1 cut(s) 303
MwoI GCNNNNNNNGC 1 cut(s) 36
NdeI CATATG 1 cut(s) 319
NlaIV GGNNCC 1 cut(s) 110
NmeAIII GCCGAG 1 cut(s) 133
NmuCI GTSAC 1 cut(s) 184
PcsI WCGNNNNNNNCGW 1 cut(s) 66
PleI GAGTC 1 cut(s) 70
PmaCI CACGTG 1 cut(s) 269
PmlI CACGTG 1 cut(s) 269
PpsI GAGTC 1 cut(s) 70
Ppu21I YACGTR 1 cut(s) 269
PspCI CACGTG 1 cut(s) 269
PspN4I GGNNCC 1 cut(s) 110
RseI CAYNNNNRTG 1 cut(s) 23
SalI GTCGAC 1 cut(s) 53
SchI GAGTC 1 cut(s) 71
SduI GDGCHC 1 cut(s) 32
SetI ASST 7 cut(s) 27, 45, 54, 75, 135, 271, 301
SmiMI CAYNNNNRTG 1 cut(s) 23
SmlI CTYRAG 1 cut(s) 309
SmoI CTYRAG 1 cut(s) 309
SsiI CCGC 3 cut(s) 16, 85, 171
SspMI CTAG 1 cut(s) 285
TaiI ACGT 1 cut(s) 271
TaqI TCGA 2 cut(s) 54, 60
TseFI GTSAC 1 cut(s) 184
Tsp45I GTSAC 1 cut(s) 184
TspDTI ATGAA 2 cut(s) 17, 112
TspGWI ACGGA 1 cut(s) 101
XmiI GTMKAC 2 cut(s) 54, 135
XspI CTAG 1 cut(s) 285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.