Rmu_sc0004877.1_g000002

Belongs to the BI1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004877.1
OG0001693
Physical Location & Seq
Forward (+)
5409 .. 7155
1747 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004877.1_g000002.1.cds

Sequence Viewer

Length: 543 bp
atgcttaacgggtgcggtgcgcccgctctgtttcttgagagagtaagggagcaggaatggaggctctcaagccaaatagacttaaaagaagatgaggttctttccttagatcgagggtccgactcctggagaaaagcgtctcgtgcaaatcgaaatatggaagaaaacgaggagaaacggaaacgactctacacgccaatgctgtttcctagaggaaaaagtcactactacaaaaagtgcatcacacaacacccatcagacaagagaataaaagtcgacatcgagtctggtgaggtcttgtaccctggcctcagtagcgagaaccagctccgttggggtttcatacgcaaggtctacggcatctcatccgctcagcttctcctcaccaccgacatctccttcgtcaccgttctctacattcccttcaaggatgagatggaaatggcaaaggctagtggggaagttgtggtggagaagtctaatacatgtgaagaatatggtgctagtttcaagaaacctgcgtatctcaagaagcgtatgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bax1-I

Protein Analysis

180

Amino Acids

20.87

Weight (kDa)

9.03

Isoelectric Point (pI)

35.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 526
AccBSI CCGCTC 2 cut(s) 26, 371
AccI GTMKAC 2 cut(s) 276, 354
AciI CCGC 3 cut(s) 15, 24, 369
AfaI GTAC 1 cut(s) 302
AfiI CCNNNNNNNGG 1 cut(s) 126
AflIII ACRYGT 1 cut(s) 485
AgsI TTSAA 2 cut(s) 427, 511
AhdI GACNNNNNGTC 1 cut(s) 283
AjnI CCWGG 2 cut(s) 125, 304
AluBI AGCT 2 cut(s) 328, 376
AluI AGCT 2 cut(s) 328, 376
Alw26I GTCTC 1 cut(s) 144
AoxI GGCC 1 cut(s) 307
ArsI GACNNNNNNTTYG 2 cut(s) 383, 415
AspLEI GCGC 1 cut(s) 22
AspS9I GGNCC 1 cut(s) 117
AsuHPI GGTGA 3 cut(s) 302, 376, 397
AvaII GGWCC 1 cut(s) 117
BaeI ACNNNNGTAYC 2 cut(s) 506, 539
BauI CACGAG 1 cut(s) 141
BccI CCATC 2 cut(s) 262, 430
BceAI ACGGC 1 cut(s) 373
BciT130I CCWGG 2 cut(s) 127, 306
BcoDI GTCTC 1 cut(s) 144
BfaI CTAG 3 cut(s) 210, 453, 504
BfuAI ACCTGC 1 cut(s) 526
BlpI GCTNAGC 1 cut(s) 372
Bme1390I CCNGG 2 cut(s) 127, 306
Bme18I GGWCC 1 cut(s) 117
BmeRI GACNNNNNGTC 1 cut(s) 283
BmgT120I GGNCC 1 cut(s) 117
BmiI GGNNCC 1 cut(s) 118
BmrFI CCNGG 2 cut(s) 127, 306
BmsI GCATC 2 cut(s) 249, 369
BpmI CTGGAG 1 cut(s) 148
Bpu1102I GCTNAGC 1 cut(s) 372
BpuEI CTTGAG 3 cut(s) 52, 56, 512
BsaJI CCNNGG 1 cut(s) 304
Bsc4I CCNNNNNNNGG 1 cut(s) 126
BseBI CCWGG 2 cut(s) 127, 306
BseDI CCNNGG 1 cut(s) 304
BseGI GGATG 2 cut(s) 365, 436
BseLI CCNNNNNNNGG 1 cut(s) 126
BseMII CTCAG 2 cut(s) 325, 386
BseRI GAGGAG 2 cut(s) 185, 371
BshFI GGCC 1 cut(s) 309
BslI CCNNNNNNNGG 1 cut(s) 126
BsmAI GTCTC 1 cut(s) 144
BsmBI CGTCTC 1 cut(s) 144
BsnI GGCC 1 cut(s) 309
Bsp143I GATC 1 cut(s) 109
Bsp1720I GCTNAGC 1 cut(s) 372
BspACI CCGC 3 cut(s) 15, 24, 369
BspANI GGCC 1 cut(s) 309
BspCNI CTCAG 2 cut(s) 324, 385
BspLI GGNNCC 1 cut(s) 118
BspMI ACCTGC 1 cut(s) 526
BsrBI CCGCTC 2 cut(s) 26, 371
BssECI CCNNGG 1 cut(s) 304
BssMI GATC 1 cut(s) 109
BssSI CACGAG 1 cut(s) 141
Bst2BI CACGAG 1 cut(s) 141
Bst2UI CCWGG 2 cut(s) 127, 306
Bst4CI ACNGT 1 cut(s) 409
BstC8I GCNNGC 1 cut(s) 24
BstDEI CTNAG 3 cut(s) 106, 311, 372
BstF5I GGATG 2 cut(s) 365, 436
BstHHI GCGC 1 cut(s) 22
BstKTI GATC 1 cut(s) 112
BstMAI GTCTC 1 cut(s) 144
BstMBI GATC 1 cut(s) 109
BstMWI GCNNNNNNNGC 2 cut(s) 143, 315
BstNI CCWGG 2 cut(s) 127, 306
BstNSI RCATGY 1 cut(s) 489
BstSCI CCNGG 2 cut(s) 125, 304
BsuRI GGCC 1 cut(s) 309
BtsCI GGATG 2 cut(s) 365, 436
BveI ACCTGC 1 cut(s) 526
Cac8I GCNNGC 1 cut(s) 24
CfoI GCGC 1 cut(s) 22
Cfr13I GGNCC 1 cut(s) 117
CseI GACGC 1 cut(s) 126
Csp6I GTAC 1 cut(s) 301
CviAII CATG 1 cut(s) 486
CviJI RGCY 6 cut(s) 64, 72, 309, 328, 376, 452
CviKI_1 RGCY 6 cut(s) 64, 72, 309, 328, 376, 452
CviQI GTAC 1 cut(s) 301
DdeI CTNAG 3 cut(s) 106, 311, 372
DpnI GATC 1 cut(s) 111
DpnII GATC 1 cut(s) 109
DriI GACNNNNNGTC 1 cut(s) 283
Eam1105I GACNNNNNGTC 1 cut(s) 283
Eco47I GGWCC 1 cut(s) 117
EcoRII CCWGG 2 cut(s) 125, 304
Esp3I CGTCTC 1 cut(s) 144
FaeI CATG 1 cut(s) 489
FaiI YATR 5 cut(s) 158, 344, 487, 498, 539
FatI CATG 1 cut(s) 485
FauI CCCGC 1 cut(s) 31
FblI GTMKAC 2 cut(s) 276, 354
FokI GGATG 2 cut(s) 352, 443
FspBI CTAG 3 cut(s) 210, 453, 504
GlaI GCGC 1 cut(s) 21
GsuI CTGGAG 1 cut(s) 148
HaeIII GGCC 1 cut(s) 309
HgaI GACGC 1 cut(s) 126
HhaI GCGC 1 cut(s) 22
Hin1II CATG 1 cut(s) 489
Hin6I GCGC 1 cut(s) 20
HinP1I GCGC 1 cut(s) 20
HincII GTYRAC 1 cut(s) 277
HindII GTYRAC 1 cut(s) 277
HinfI GANTC 3 cut(s) 122, 186, 284
HphI GGTGA 3 cut(s) 302, 376, 397
Hpy166II GTNNAC 2 cut(s) 277, 355
Hpy188I TCNGA 2 cut(s) 121, 259
Hpy188III TCNNGA 3 cut(s) 35, 511, 529
Hpy8I GTNNAC 2 cut(s) 277, 355
HpyAV CCTTC 2 cut(s) 409, 433
HpyCH4III ACNGT 1 cut(s) 409
HpyCH4V TGCA 2 cut(s) 146, 240
HpyF10VI GCNNNNNNNGC 2 cut(s) 143, 315
HpyF3I CTNAG 3 cut(s) 106, 311, 372
Hsp92II CATG 1 cut(s) 489
HspAI GCGC 1 cut(s) 20
Kzo9I GATC 1 cut(s) 109
LmnI GCTCC 2 cut(s) 49, 333
LpnPI CCDG 8 cut(s) 38, 112, 139, 273, 291, 318, 338, 531
LweI GCATC 2 cut(s) 249, 369
MaeI CTAG 3 cut(s) 210, 453, 504
MaeIII GTNAC 2 cut(s) 221, 403
MalI GATC 1 cut(s) 111
MbiI CCGCTC 2 cut(s) 26, 371
MboI GATC 1 cut(s) 109
MboII GAAGA 3 cut(s) 101, 173, 503
MlyI GAGTC 3 cut(s) 116, 180, 293
MmeI TCCRAC 1 cut(s) 144
MnlI CCTC 8 cut(s) 54, 88, 107, 163, 206, 286, 320, 392
MseI TTAA 2 cut(s) 6, 83
MslI CAYNNNNRTG 1 cut(s) 197
MspR9I CCNGG 2 cut(s) 127, 306
MvaI CCWGG 2 cut(s) 127, 306
MwoI GCNNNNNNNGC 2 cut(s) 143, 315
NdeII GATC 1 cut(s) 109
NlaIII CATG 1 cut(s) 489
NlaIV GGNNCC 1 cut(s) 118
NmuCI GTSAC 2 cut(s) 221, 403
NspI RCATGY 1 cut(s) 489
PciI ACATGT 1 cut(s) 485
PcsI WCGNNNNNNNCGW 1 cut(s) 148
PfoI TCCNGGA 1 cut(s) 125
PleI GAGTC 3 cut(s) 116, 180, 292
PpsI GAGTC 3 cut(s) 116, 180, 292
PscI ACATGT 1 cut(s) 485
Psp6I CCWGG 2 cut(s) 125, 304
PspGI CCWGG 2 cut(s) 125, 304
PspN4I GGNNCC 1 cut(s) 118
PspPI GGNCC 1 cut(s) 117
RsaI GTAC 1 cut(s) 302
RsaNI GTAC 1 cut(s) 301
RseI CAYNNNNRTG 1 cut(s) 197
SalI GTCGAC 1 cut(s) 275
SaqAI TTAA 2 cut(s) 6, 83
Sau3AI GATC 1 cut(s) 109
Sau96I GGNCC 1 cut(s) 117
SchI GAGTC 3 cut(s) 116, 180, 293
ScrFI CCNGG 2 cut(s) 127, 306
SetI ASST 6 cut(s) 99, 297, 330, 354, 378, 520
SfaNI GCATC 2 cut(s) 249, 369
SinI GGWCC 1 cut(s) 117
SmiMI CAYNNNNRTG 1 cut(s) 197
SmlI CTYRAG 3 cut(s) 35, 67, 527
SmoI CTYRAG 3 cut(s) 35, 67, 527
SsiI CCGC 3 cut(s) 15, 24, 369
SspMI CTAG 3 cut(s) 210, 453, 504
StyD4I CCNGG 2 cut(s) 125, 304
TaaI ACNGT 1 cut(s) 409
TaqI TCGA 4 cut(s) 112, 151, 276, 282
Tru1I TTAA 2 cut(s) 6, 83
Tru9I TTAA 2 cut(s) 6, 83
TseFI GTSAC 2 cut(s) 221, 403
Tsp45I GTSAC 2 cut(s) 221, 403
TspDTI ATGAA 1 cut(s) 331
TspGWI ACGGA 2 cut(s) 193, 320
VpaK11BI GGWCC 1 cut(s) 117
XceI RCATGY 1 cut(s) 489
XmiI GTMKAC 2 cut(s) 276, 354
XspI CTAG 3 cut(s) 210, 453, 504
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.