Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000565.1

Orthogroup ID

OG0001693

Physical Location & Seq

Genomic Coordinates Reverse (-)

92533 .. 98315

Gene Structure 5783 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000565.1_g000023.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

atgcttgcaaatagctatgtcgacatcgagtccggtgaggtcttgtaccctggcctcagtagcaagaaccagctccgttggggtttcatacgcaaggtctacggcatcttatccgctcagcttctcctcaccaccgacatctccttcagcaccgttctctacactcccgtcaaggatgagatggaaatggcaaaggctggtggggaagttgtggtggagaagtctaatacatgtgaagaatgtggtgctagtttcaagaaacctgcatatctcaagaagcgtatgcaaagccattctcctgagaaggcagtctggaaggatgcgaaccgggtaggaaaagtttttctcttctggaggccagttcagtacttttccggccggtttcggttaggggctacaaggtgtcgccagcggttctggattcctaggattaggggctacaaggtgtgcggcggtggttactcgaatttgaggactacgaatttaaggtttcaggattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bax1-I

Protein Analysis

166

Amino Acids

19.02

Weight (kDa)

9.83

Isoelectric Point (pI)

31.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001693)

Species	Orthologous Gene IDs
malus_domestica	MD15G1186700.v1.1
prunus_persica	Prupe.4G066100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0336331 RchiOBHm_Chr6g0290001 RchiOBHm_Chr7g0227531
rosa_laevigata	RLG00000002888 RLG00000019365
rosa_multiflora	Rmu_sc0000565.1_g000023 Rmu_sc0000776.1_g000047 Rmu_sc0002131.1_g000031 Rmu_sc0002701.1_g000052 Rmu_sc0003318.1_g000004 Rmu_sc0004517.1_g000008 Rmu_sc0004877.1_g000002 Rmu_sc0039095.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033520 Rroxscaffold_1G00040810 Rroxscaffold_1G00040820 Rroxscaffold_2G00107400 Rroxscaffold_2G00116610 Rroxscaffold_3G00224610 Rroxscaffold_4G00304390 Rroxscaffold_4G00304400 Rroxscaffold_4G00315830 Rroxscaffold_5G00346140 Rroxscaffold_5G00380560 Rroxscaffold_6G00389400 Rroxscaffold_7G00183550 Rroxscaffold_7G00205640
rosa_rugosa	Rorug06G0035900
rosa_samantha	Rh1AG116800 Rh2BG425100 Rh2CG611600 Rh2DG432400 Rh3CG233600 Rh4AG247700 Rh4BG058900 Rh4CG156400 Rh5AG268300 Rh5AG485100 Rh5BG239200 Rh5BG398300 Rh6CG191700 Rh7AG359900 Rh7AG382100 Rh7AG403900 Rh7CG188000 Rh7CG378300 Rh7DG395000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	271
AccBSI	CCGCTC	1 cut(s)	116
AccI	GTMKAC	2 cut(s)	21, 99
AciI	CCGC	4 cut(s)	114, 412, 450, 453
AcoI	YGGCCR	1 cut(s)	376
AcsI	RAATTY	2 cut(s)	466, 481
AcuI	CTGAAG	1 cut(s)	130
AfaI	GTAC	2 cut(s)	47, 368
AflIII	ACRYGT	1 cut(s)	230
AgsI	TTSAA	1 cut(s)	256
AhdI	GACNNNNNGTC	1 cut(s)	28
AjnI	CCWGG	1 cut(s)	49
AluBI	AGCT	3 cut(s)	15, 73, 121
AluI	AGCT	3 cut(s)	15, 73, 121
AoxI	GGCC	3 cut(s)	52, 356, 376
ApoI	RAATTY	2 cut(s)	466, 481
AspA2I	CCTAGG	1 cut(s)	425
AsuC2I	CCSGG	1 cut(s)	329
AsuHPI	GGTGA	2 cut(s)	47, 121
AvrII	CCTAGG	1 cut(s)	425
BccI	CCATC	1 cut(s)	175
BceAI	ACGGC	1 cut(s)	118
BciT130I	CCWGG	1 cut(s)	51
BcnI	CCSGG	1 cut(s)	329
BfaI	CTAG	2 cut(s)	249, 426
BfuAI	ACCTGC	1 cut(s)	271
BisI	GCNGC	1 cut(s)	451
BlnI	CCTAGG	1 cut(s)	425
BlpI	GCTNAGC	1 cut(s)	117
BlsI	GCNGC	1 cut(s)	452
BmcAI	AGTACT	1 cut(s)	368
Bme1390I	CCNGG	2 cut(s)	51, 329
BmeRI	GACNNNNNGTC	1 cut(s)	28
BmrFI	CCNGG	2 cut(s)	51, 329
BmsI	GCATC	2 cut(s)	114, 310
BpmI	CTGGAG	1 cut(s)	373
Bpu1102I	GCTNAGC	1 cut(s)	117
BpuEI	CTTGAG	1 cut(s)	257
BpuMI	CCSGG	1 cut(s)	329
BsaJI	CCNNGG	2 cut(s)	49, 425
BsaWI	WCCGGW	1 cut(s)	32
Bse118I	RCCGGY	1 cut(s)	378
Bse1I	ACTGG	1 cut(s)	359
BseBI	CCWGG	1 cut(s)	51
BseDI	CCNNGG	2 cut(s)	49, 425
BseGI	GGATG	2 cut(s)	181, 325
BseMII	CTCAG	3 cut(s)	70, 131, 291
BseNI	ACTGG	1 cut(s)	359
BseRI	GAGGAG	1 cut(s)	116
BseX3I	CGGCCG	1 cut(s)	376
Bsh1285I	CGRYCG	1 cut(s)	379
BshFI	GGCC	3 cut(s)	54, 358, 378
BsiEI	CGRYCG	1 cut(s)	379
BsiSI	CCGG	4 cut(s)	33, 328, 375, 379
BsnI	GGCC	3 cut(s)	54, 358, 378
Bsp1720I	GCTNAGC	1 cut(s)	117
BspACI	CCGC	4 cut(s)	114, 412, 450, 453
BspANI	GGCC	3 cut(s)	54, 358, 378
BspCNI	CTCAG	3 cut(s)	69, 130, 292
BspMI	ACCTGC	1 cut(s)	271
BsrBI	CCGCTC	1 cut(s)	116
BsrFI	RCCGGY	1 cut(s)	378
BsrI	ACTGG	1 cut(s)	359
BssAI	RCCGGY	1 cut(s)	378
BssECI	CCNNGG	2 cut(s)	49, 425
BssT1I	CCWWGG	1 cut(s)	425
Bst2UI	CCWGG	1 cut(s)	51
Bst4CI	ACNGT	1 cut(s)	154
Bst6I	CTCTTC	1 cut(s)	353
BstC8I	GCNNGC	2 cut(s)	6, 410
BstDEI	CTNAG	3 cut(s)	56, 117, 300
BstF5I	GGATG	2 cut(s)	181, 325
BstMCI	CGRYCG	1 cut(s)	379
BstMWI	GCNNNNNNNGC	1 cut(s)	60
BstNI	CCWGG	1 cut(s)	51
BstNSI	RCATGY	1 cut(s)	234
BstSCI	CCNGG	2 cut(s)	49, 327
BstZI	CGGCCG	1 cut(s)	376
BsuRI	GGCC	3 cut(s)	54, 358, 378
BtsCI	GGATG	2 cut(s)	181, 325
BveI	ACCTGC	1 cut(s)	271
Cac8I	GCNNGC	2 cut(s)	6, 410
Cfr10I	RCCGGY	1 cut(s)	378
Csp6I	GTAC	2 cut(s)	46, 367
CviAII	CATG	1 cut(s)	231
CviQI	GTAC	2 cut(s)	46, 367
DdeI	CTNAG	3 cut(s)	56, 117, 300
DriI	GACNNNNNGTC	1 cut(s)	28
EaeI	YGGCCR	1 cut(s)	376
EagI	CGGCCG	1 cut(s)	376
Eam1104I	CTCTTC	1 cut(s)	353
Eam1105I	GACNNNNNGTC	1 cut(s)	28
EarI	CTCTTC	1 cut(s)	353
EclXI	CGGCCG	1 cut(s)	376
Eco130I	CCWWGG	1 cut(s)	425
Eco52I	CGGCCG	1 cut(s)	376
Eco57I	CTGAAG	1 cut(s)	130
EcoRII	CCWGG	1 cut(s)	49
EcoT14I	CCWWGG	1 cut(s)	425
ErhI	CCWWGG	1 cut(s)	425
FaeI	CATG	1 cut(s)	234
FaiI	YATR	5 cut(s)	18, 89, 232, 268, 284
FatI	CATG	1 cut(s)	230
FblI	GTMKAC	2 cut(s)	21, 99
Fnu4HI	GCNGC	1 cut(s)	451
FokI	GGATG	2 cut(s)	188, 332
Fsp4HI	GCNGC	1 cut(s)	451
FspBI	CTAG	2 cut(s)	249, 426
GluI	GCNGC	1 cut(s)	451
GsuI	CTGGAG	1 cut(s)	373
HaeIII	GGCC	3 cut(s)	54, 358, 378
HapII	CCGG	4 cut(s)	33, 328, 375, 379
Hin1II	CATG	1 cut(s)	234
HincII	GTYRAC	1 cut(s)	22
HindII	GTYRAC	1 cut(s)	22
HinfI	GANTC	2 cut(s)	29, 421
HpaII	CCGG	4 cut(s)	33, 328, 375, 379
HphI	GGTGA	2 cut(s)	47, 121
Hpy166II	GTNNAC	2 cut(s)	22, 100
Hpy188III	TCNNGA	7 cut(s)	256, 274, 299, 313, 352, 418, 494
Hpy8I	GTNNAC	2 cut(s)	22, 100
HpyAV	CCTTC	3 cut(s)	154, 298, 310
HpyCH4III	ACNGT	1 cut(s)	154
HpyCH4V	TGCA	3 cut(s)	8, 266, 286
HpyF10VI	GCNNNNNNNGC	1 cut(s)	60
HpyF3I	CTNAG	3 cut(s)	56, 117, 300
Hsp92II	CATG	1 cut(s)	234
LmnI	GCTCC	1 cut(s)	78
LweI	GCATC	2 cut(s)	114, 310
MaeI	CTAG	2 cut(s)	249, 426
MaeIII	GTNAC	1 cut(s)	458
MbiI	CCGCTC	1 cut(s)	116
MboII	GAAGA	2 cut(s)	248, 340
MluCI	AATT	2 cut(s)	466, 481
MlyI	GAGTC	1 cut(s)	38
MnlI	CCTC	5 cut(s)	31, 65, 137, 348, 465
MseI	TTAA	1 cut(s)	485
MspA1I	CMGCKG	1 cut(s)	412
MspI	CCGG	4 cut(s)	33, 328, 375, 379
MspR9I	CCNGG	2 cut(s)	51, 329
MvaI	CCWGG	1 cut(s)	51
MwoI	GCNNNNNNNGC	1 cut(s)	60
NciI	CCSGG	1 cut(s)	329
NlaIII	CATG	1 cut(s)	234
NspI	RCATGY	1 cut(s)	234
PciI	ACATGT	1 cut(s)	230
PfeI	GAWTC	1 cut(s)	421
PkrI	GCNGC	1 cut(s)	452
PleI	GAGTC	1 cut(s)	37
PpsI	GAGTC	1 cut(s)	37
PscI	ACATGT	1 cut(s)	230
Psp6I	CCWGG	1 cut(s)	49
PspGI	CCWGG	1 cut(s)	49
RsaI	GTAC	2 cut(s)	47, 368
RsaNI	GTAC	2 cut(s)	46, 367
SalI	GTCGAC	1 cut(s)	20
SaqAI	TTAA	1 cut(s)	485
SatI	GCNGC	1 cut(s)	451
ScaI	AGTACT	1 cut(s)	368
SchI	GAGTC	1 cut(s)	38
ScrFI	CCNGG	2 cut(s)	51, 329
SetI	ASST	9 cut(s)	17, 42, 75, 99, 123, 265, 404, 447, 491
SfaNI	GCATC	2 cut(s)	114, 310
SmlI	CTYRAG	1 cut(s)	272
SmoI	CTYRAG	1 cut(s)	272
Sse9I	AATT	2 cut(s)	466, 481
SsiI	CCGC	4 cut(s)	114, 412, 450, 453
SspMI	CTAG	2 cut(s)	249, 426
StyD4I	CCNGG	2 cut(s)	49, 327
StyI	CCWWGG	1 cut(s)	425
TaaI	ACNGT	1 cut(s)	154
TaqI	TCGA	3 cut(s)	21, 27, 464
TasI	AATT	2 cut(s)	466, 481
TatI	WGTACW	1 cut(s)	366
TauI	GCSGC	1 cut(s)	453
TfiI	GAWTC	1 cut(s)	421
Tru1I	TTAA	1 cut(s)	485
Tru9I	TTAA	1 cut(s)	485
TspDTI	ATGAA	1 cut(s)	76
TspGWI	ACGGA	1 cut(s)	65
XapI	RAATTY	2 cut(s)	466, 481
XceI	RCATGY	1 cut(s)	234
XmaJI	CCTAGG	1 cut(s)	425
XmiI	GTMKAC	2 cut(s)	21, 99
XspI	CTAG	2 cut(s)	249, 426
ZrmI	AGTACT	1 cut(s)	368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.