Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001693

Physical Location & Seq

Genomic Coordinates Reverse (-)

48531961 .. 48538163

Gene Structure 6203 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00033520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGACTTTGGCATTGAGCACACAGGGCCCGAGTATCGCCGTCTCTTTACACTTTGCACATCACTTGTTATGGCCGGATGAGATGGAAATGGCAAAGGCTGGTGGGGAAGTTGTGGTGGAGAAGTCTAATACATGTGAAGAATGTGGTGCTAGTTTCAAGAAACTTGCGTATCTCAAGAAGCATATACAAAGCCATTCTCCCGAGGTATTGTGGGATTTTATGAAGCTGATTGAGTGTACACCTTTTCATGAAATTGTTTACTATAGAAATGTTGAAAACCTTCAATCGGTAAGCATTCGATGGCATCTCTCACTAGTTTATAAGCAACCTGTTATAATGAAAATTAGAATAGGTATCCTTTGGCAGGTTTGTGTTGATATCATGTTCACAAAATTGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000182 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0008097 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019843 GO:0022613 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0042254 GO:0042273 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0080084 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR zf-C2H2

Protein Analysis

133

Amino Acids

15.34

Weight (kDa)

7.04

Isoelectric Point (pI)

51.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001693)

Species	Orthologous Gene IDs
malus_domestica	MD15G1186700.v1.1
prunus_persica	Prupe.4G066100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0336331 RchiOBHm_Chr6g0290001 RchiOBHm_Chr7g0227531
rosa_laevigata	RLG00000002888 RLG00000019365
rosa_multiflora	Rmu_sc0000565.1_g000023 Rmu_sc0000776.1_g000047 Rmu_sc0002131.1_g000031 Rmu_sc0002701.1_g000052 Rmu_sc0003318.1_g000004 Rmu_sc0004517.1_g000008 Rmu_sc0004877.1_g000002 Rmu_sc0039095.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033520 Rroxscaffold_1G00040810 Rroxscaffold_1G00040820 Rroxscaffold_2G00107400 Rroxscaffold_2G00116610 Rroxscaffold_3G00224610 Rroxscaffold_4G00304390 Rroxscaffold_4G00304400 Rroxscaffold_4G00315830 Rroxscaffold_5G00346140 Rroxscaffold_5G00380560 Rroxscaffold_6G00389400 Rroxscaffold_7G00183550 Rroxscaffold_7G00205640
rosa_rugosa	Rorug06G0035900
rosa_samantha	Rh1AG116800 Rh2BG425100 Rh2CG611600 Rh2DG432400 Rh3CG233600 Rh4AG247700 Rh4BG058900 Rh4CG156400 Rh5AG268300 Rh5AG485100 Rh5BG239200 Rh5BG398300 Rh6CG191700 Rh7AG359900 Rh7AG382100 Rh7AG403900 Rh7CG188000 Rh7CG378300 Rh7DG395000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	321, 335
Acc36I	ACCTGC	1 cut(s)	355
AcoI	YGGCCR	1 cut(s)	71
AfaI	GTAC	1 cut(s)	238
AfiI	CCNNNNNNNGG	2 cut(s)	286, 364
AflIII	ACRYGT	1 cut(s)	131
AgsI	TTSAA	4 cut(s)	157, 275, 284, 397
AhlI	ACTAGT	1 cut(s)	313
AluBI	AGCT	1 cut(s)	226
AluI	AGCT	1 cut(s)	226
Alw21I	GWGCWC	1 cut(s)	20
Alw26I	GTCTC	1 cut(s)	46
Ama87I	CYCGRG	2 cut(s)	28, 200
AoxI	GGCC	2 cut(s)	25, 71
ApaI	GGGCCC	1 cut(s)	29
Asp700I	GAANNNNTTC	1 cut(s)	279
AspS9I	GGNCC	2 cut(s)	25, 26
AvaI	CYCGRG	2 cut(s)	28, 200
BaeGI	GKGCMC	1 cut(s)	29
BaeI	ACNNNNGTAYC	2 cut(s)	152, 185
BanII	GRGCYC	1 cut(s)	29
Bbv12I	GWGCWC	1 cut(s)	20
BccI	CCATC	2 cut(s)	76, 294
BceAI	ACGGC	1 cut(s)	23
BciVI	GTATCC	1 cut(s)	365
BcoDI	GTCTC	1 cut(s)	46
BcuI	ACTAGT	1 cut(s)	313
BfaI	CTAG	2 cut(s)	150, 314
BfmI	CTRYAG	1 cut(s)	262
BfuAI	ACCTGC	1 cut(s)	355
BfuI	GTATCC	1 cut(s)	365
BmeT110I	CYCGRG	2 cut(s)	28, 200
BmgT120I	GGNCC	2 cut(s)	25, 26
BmiI	GGNNCC	1 cut(s)	27
BmsI	GCATC	1 cut(s)	313
BpuEI	CTTGAG	1 cut(s)	158
BsaJI	CCNNGG	1 cut(s)	201
Bsc4I	CCNNNNNNNGG	2 cut(s)	286, 364
BseDI	CCNNGG	1 cut(s)	201
BseGI	GGATG	1 cut(s)	82
BseLI	CCNNNNNNNGG	2 cut(s)	286, 364
BseSI	GKGCMC	1 cut(s)	29
BshFI	GGCC	2 cut(s)	27, 73
BsiHKAI	GWGCWC	1 cut(s)	20
BsiHKCI	CYCGRG	2 cut(s)	28, 200
BsiSI	CCGG	1 cut(s)	74
BslI	CCNNNNNNNGG	2 cut(s)	286, 364
BsmAI	GTCTC	1 cut(s)	46
BsmBI	CGTCTC	1 cut(s)	46
BsmI	GAATGC	1 cut(s)	294
BsnI	GGCC	2 cut(s)	27, 73
BsoBI	CYCGRG	2 cut(s)	28, 200
Bsp120I	GGGCCC	1 cut(s)	25
Bsp1286I	GDGCHC	2 cut(s)	20, 29
Bsp1407I	TGTACA	1 cut(s)	236
BspANI	GGCC	2 cut(s)	27, 73
BspHI	TCATGA	1 cut(s)	247
BspLI	GGNNCC	1 cut(s)	27
BspMI	ACCTGC	1 cut(s)	355
BsrGI	TGTACA	1 cut(s)	236
BssECI	CCNNGG	1 cut(s)	201
BstAUI	TGTACA	1 cut(s)	236
BstENI	CCTNNNNNAGG	1 cut(s)	362
BstF5I	GGATG	1 cut(s)	82
BstMAI	GTCTC	1 cut(s)	46
BstMWI	GCNNNNNNNGC	1 cut(s)	24
BstNSI	RCATGY	1 cut(s)	135
BstSFI	CTRYAG	1 cut(s)	262
BstSLI	GKGCMC	1 cut(s)	29
BsuI	GTATCC	1 cut(s)	365
BsuRI	GGCC	2 cut(s)	27, 73
BtsCI	GGATG	1 cut(s)	82
BveI	ACCTGC	1 cut(s)	355
CciI	TCATGA	1 cut(s)	247
Cfr13I	GGNCC	2 cut(s)	25, 26
Csp6I	GTAC	1 cut(s)	237
CviAII	CATG	3 cut(s)	132, 248, 382
CviJI	RGCY	5 cut(s)	27, 73, 98, 192, 226
CviKI_1	RGCY	5 cut(s)	27, 73, 98, 192, 226
CviQI	GTAC	1 cut(s)	237
EaeI	YGGCCR	1 cut(s)	71
Eco24I	GRGCYC	1 cut(s)	29
Eco32I	GATATC	1 cut(s)	379
Eco88I	CYCGRG	2 cut(s)	28, 200
EcoNI	CCTNNNNNAGG	1 cut(s)	362
EcoO109I	RGGNCCY	1 cut(s)	25
EcoRV	GATATC	1 cut(s)	379
EcoT38I	GRGCYC	1 cut(s)	29
Esp3I	CGTCTC	1 cut(s)	46
FaeI	CATG	3 cut(s)	135, 251, 385
FatI	CATG	3 cut(s)	131, 247, 381
FokI	GGATG	1 cut(s)	89
FriOI	GRGCYC	1 cut(s)	29
FspBI	CTAG	2 cut(s)	150, 314
HaeIII	GGCC	2 cut(s)	27, 73
HapII	CCGG	1 cut(s)	74
Hin1II	CATG	3 cut(s)	135, 251, 385
HpaII	CCGG	1 cut(s)	74
Hpy166II	GTNNAC	4 cut(s)	237, 239, 259, 387
Hpy188III	TCNNGA	4 cut(s)	157, 175, 200, 248
Hpy8I	GTNNAC	4 cut(s)	237, 239, 259, 387
HpyAV	CCTTC	1 cut(s)	290
HpyCH4V	TGCA	1 cut(s)	56
HpyF10VI	GCNNNNNNNGC	1 cut(s)	24
Hsp92II	CATG	3 cut(s)	135, 251, 385
LpnPI	CCDG	5 cut(s)	8, 84, 87, 342, 350
LweI	GCATC	1 cut(s)	313
MaeI	CTAG	2 cut(s)	150, 314
MboII	GAAGA	1 cut(s)	149
MhlI	GDGCHC	2 cut(s)	20, 29
MluCI	AATT	4 cut(s)	252, 342, 392, 397
MnlI	CCTC	1 cut(s)	196
MroXI	GAANNNNTTC	1 cut(s)	279
MspI	CCGG	1 cut(s)	74
Mva1269I	GAATGC	1 cut(s)	294
MwoI	GCNNNNNNNGC	1 cut(s)	24
NlaIII	CATG	3 cut(s)	135, 251, 385
NlaIV	GGNNCC	1 cut(s)	27
NspI	RCATGY	1 cut(s)	135
PagI	TCATGA	1 cut(s)	247
PciI	ACATGT	1 cut(s)	131
PctI	GAATGC	1 cut(s)	294
PdmI	GAANNNNTTC	1 cut(s)	279
PscI	ACATGT	1 cut(s)	131
PsiI	TTATAA	2 cut(s)	321, 335
PspN4I	GGNNCC	1 cut(s)	27
PspOMI	GGGCCC	1 cut(s)	25
PspPI	GGNCC	2 cut(s)	25, 26
RsaI	GTAC	1 cut(s)	238
RsaNI	GTAC	1 cut(s)	237
Sau96I	GGNCC	2 cut(s)	25, 26
SduI	GDGCHC	2 cut(s)	20, 29
SetI	ASST	7 cut(s)	207, 228, 244, 282, 331, 355, 369
SfaNI	GCATC	1 cut(s)	313
SfcI	CTRYAG	1 cut(s)	262
SmlI	CTYRAG	1 cut(s)	173
SmoI	CTYRAG	1 cut(s)	173
SpeI	ACTAGT	1 cut(s)	313
Sse9I	AATT	4 cut(s)	252, 342, 392, 397
SspMI	CTAG	2 cut(s)	150, 314
TaqI	TCGA	1 cut(s)	298
TasI	AATT	4 cut(s)	252, 342, 392, 397
TatI	WGTACW	1 cut(s)	236
TspDTI	ATGAA	4 cut(s)	236, 236, 264, 353
XagI	CCTNNNNNAGG	1 cut(s)	362
XceI	RCATGY	1 cut(s)	135
XmnI	GAANNNNTTC	1 cut(s)	279
XspI	CTAG	2 cut(s)	150, 314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.