RLG00000009742

Putative S-adenosyl-L-methionine-dependent methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000529
Physical Location & Seq
Reverse (-)
57213237 .. 57215246
2010 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009742

Sequence Viewer

Length: 1230 bp
ATGACGAGGGGAAGATCTGATCCAGCCCAAAAGAAGCGCGTGATCACCATTCTGTGTGTTTTGGCACTCTTTCTTGTTTTCCTGTATGGGTATTATGGTTCCATCTTTGGCTCTCAAAGTCATGGTGCATCAGCTCTAGAATATGGCAGTAGATCTTTGAGAAAGCTTGGTTCATCTTATTTGGGTGGGGATGATGATACCGATGGCAAGCTGGATGAATCTTCAACAAAGTATGGGCAGGAAGATGGAGATGATGATGTTACAGTGAAGAGCTTCCCGGTTTGTGATGATCGCCATTCGGAACTTATCCCTTGCTTGGACAGAAATCTCATATATCAAATGAGACTGAAGTTGGACTTGTCTTTGATGGAGCACTATGAGAGGCATTGTCCTTCTCCAGAAAGGCGATACAATTGCTTGATTCCTCCTCCAATAGGGTACAAGGTCCCAATCAAGTGGCCCCAGAGTCGAGATGAAGTATGGAAAGCAAATATACCTCATACTCACCTTGCACATGAGAAATCCGACCAGAACTGGATGGTTGAAAAAGGTGACAAGATTAGTTTTCCTGGGGGAGGCACACATTTTCACTATGGAGCTGATAAGTATATTGCTTCAATTGCAAATATGCTCAACTTTACAAAGAACAATCTAAACAATGAAGGCAGGTTACGTACAGTTTTTGACGTTGGCTGTGGAGTTGCAAGTTTTGGAGGCTATCTTCTGTCATCTGATATTATAACAATGTCCTTAGCACCCAATGATGTGCATCAAAATCAAATCCAATTTGCTTTGGAAAGAGGAATTCCAGCATATCTTGGTGTTCTAGGGACCAAAAGGCTTCCTTACCCAAGCAGATCTTTTGAACTTGCTCACTGTTCCCGTTGTAGAATTGATTGGCTCCAAAGAGATGGGATCCTTCTTCTTGAGCTAGATAGGTTGCTCAGGCCAGGAGGCTACTTTGCGTACTCATCTCCAGAAGCATATGCACAGGATGAGGAAGATCTCAAAATATGGAAAGAGATGAGTGCCCTTGTGGAACGCATGTGTTGGAGAATAGCTGCAAAAAGGAATCAAACTGTCATTTGGCAGAAACCACTAACAAATGACTGTTATATGCAAAGAGAACCTGGCACTCAACCTCCTCTCTGCCGATCCGATGATGATCCGGATGCAATCTGGGGTGTGCCAATGGAAGCTTGCATCTCACCGTACTCTGATCGTAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Methyltransf_29 zf-C3HC4_3

Protein Analysis

410

Amino Acids

46.46

Weight (kDa)

6.28

Isoelectric Point (pI)

45.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_29 PF03141 101 - 408 1.2e-143 Putative S-adenosyl-L-methionine-dependent methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000529)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04430 AT1G04430 AT1G04430 AT3G23300 AT3G23300 AT4G14360 AT4G14360
fragaria_vesca FvH4_2g21260 FvH4_2g21260 FvH4_2g21260 FvH4_4g03770 FvH4_4g03770 FvH4_4g03770 FvH4_4g03770 FvH4_4g03770 FvH4_4g03770
malus_domestica MD05G1195000.v1.1 MD10G1181600.v1.1 MD10G1182100.v1.1 MD13G1215000.v1.1
prunus_persica Prupe.1G040400_v2.0.a1 Prupe.1G040400_v2.0.a1 Prupe.1G040400_v2.0.a1 Prupe.1G040400_v2.0.a1 Prupe.8G221700_v2.0.a1 Prupe.8G221700_v2.0.a1 Prupe.8G221700_v2.0.a1
pyrus_communis pycom05g18230 pycom10g15760 pycom10g15770 pycom111g01800
rosa_chinensis RchiOBHm_Chr4g0393501 RchiOBHm_Chr4g0393511 RchiOBHm_Chr4g0393631 RchiOBHm_Chr6g0287841
rosa_laevigata RLG00000009742 RLG00000012463
rosa_multiflora Rmu_sc0001531.1_g000028 Rmu_sc0003877.1_g000004 Rmu_sc0007724.1_g000003 Rmu_sc0008931.1_g000001 Rmu_sc0015036.1_g000004 Rmu_sc0021463.1_g000002 Rmu_sc0023299.1_g000001 Rmu_sc0023300.1_g000001 Rmu_sc0036005.1_g000001
rosa_roxburghii Rroxscaffold_5G00338440 Rroxscaffold_5G00338470 Rroxscaffold_5G00338730 Rroxscaffold_5G00338790 Rroxscaffold_7G00180730 Rroxscaffold_7G00180820
rosa_rugosa Rorug03G0372400 Rorug03G0372500 Rorug03G0372600 Rorug04G0000100 Rorug04G0000200 Rorug04G0000300 Rorug04G0000400 Rorug04G0000500 Rorug04G0000600.1 Rorug04G0000700 Rorug04G0000800 Rorug04G0000900 Rorug06G0192300 Rorug06G0192400 Rorug06G0192500
rosa_samantha Rh4AG047800 Rh4AG048100 Rh4BG043700 Rh4BG044600 Rh4CG050500 Rh4CG050600 Rh4CG050700 Rh4CG051400 Rh4DG045000 Rh4DG045300 Rh6AG302000 Rh6BG307900 Rh6CG301600 Rh6CG315800 Rh6DG300500
rosa_wichuraiana Rw4G003770 Rw4G003800 Rw6G026090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 740
Acc36I ACCTGC 1 cut(s) 657
AccII CGCG 1 cut(s) 39
AccIII TCCGGA 1 cut(s) 1168
AclWI GGATC 5 cut(s) 14, 910, 923, 1149, 1160
AcsI RAATTY 1 cut(s) 804
AcuI CTGAAG 1 cut(s) 368
AfaI GTAC 4 cut(s) 440, 676, 968, 1214
AfiI CCNNNNNNNGG 3 cut(s) 316, 434, 575
AgsI TTSAA 4 cut(s) 225, 545, 618, 866
AjnI CCWGG 3 cut(s) 568, 949, 1129
AluBI AGCT 8 cut(s) 134, 166, 211, 273, 599, 931, 1061, 1199
AluI AGCT 8 cut(s) 134, 166, 211, 273, 599, 931, 1061, 1199
Alw21I GWGCWC 1 cut(s) 375
Alw26I GTCTC 1 cut(s) 337
AlwI GGATC 5 cut(s) 14, 910, 923, 1149, 1160
Aor13HI TCCGGA 1 cut(s) 1168
AoxI GGCC 2 cut(s) 458, 947
ApeKI GCWGC 1 cut(s) 1061
ApoI RAATTY 1 cut(s) 804
Asp700I GAANNNNTTC 1 cut(s) 272
AspLEI GCGC 1 cut(s) 39
AspS9I GGNCC 3 cut(s) 445, 459, 831
AsuC2I CCSGG 1 cut(s) 278
AsuHPI GGTGA 4 cut(s) 37, 497, 563, 1200
AvaII GGWCC 2 cut(s) 445, 831
BaeGI GKGCMC 1 cut(s) 1033
BamHI GGATCC 1 cut(s) 915
BarI GAAGNNNNNNTAC 2 cut(s) 654, 686
Bbv12I GWGCWC 1 cut(s) 375
BbvI GCAGC 1 cut(s) 1048
BccI CCATC 6 cut(s) 110, 197, 239, 361, 532, 905
BcgI CGANNNNNNTGC 2 cut(s) 396, 430
BciT130I CCWGG 3 cut(s) 570, 951, 1131
BclI TGATCA 1 cut(s) 42
BcnI CCSGG 1 cut(s) 278
BcoDI GTCTC 1 cut(s) 337
BfaI CTAG 3 cut(s) 137, 827, 932
BfuAI ACCTGC 1 cut(s) 657
BglII AGATCT 4 cut(s) 14, 152, 857, 1003
BisI GCNGC 1 cut(s) 1062
BlsI GCNGC 1 cut(s) 1063
Bme1390I CCNGG 4 cut(s) 278, 570, 951, 1131
Bme18I GGWCC 2 cut(s) 445, 831
BmgT120I GGNCC 3 cut(s) 445, 459, 831
BmiI GGNNCC 6 cut(s) 100, 447, 461, 832, 902, 917
BmrFI CCNGG 4 cut(s) 278, 570, 951, 1131
BmsI GCATC 4 cut(s) 137, 778, 1162, 1212
BpmI CTGGAG 2 cut(s) 381, 960
Bpu10I CCTNAGC 2 cut(s) 751, 944
BpuEI CTTGAG 1 cut(s) 947
BpuMI CCSGG 1 cut(s) 278
BsaAI YACGTR 1 cut(s) 674
BsaBI GATNNNNATC 2 cut(s) 768, 1164
BsaJI CCNNGG 1 cut(s) 569
BsaWI WCCGGW 1 cut(s) 1168
BsaXI ACNNNNNCTCC 2 cut(s) 1126, 1156
Bsc4I CCNNNNNNNGG 3 cut(s) 316, 434, 575
Bse1I ACTGG 1 cut(s) 539
Bse8I GATNNNNATC 2 cut(s) 768, 1164
BseAI TCCGGA 1 cut(s) 1168
BseBI CCWGG 3 cut(s) 570, 951, 1131
BseDI CCNNGG 1 cut(s) 569
BseGI GGATG 5 cut(s) 196, 220, 543, 1000, 1177
BseJI GATNNNNATC 2 cut(s) 768, 1164
BseLI CCNNNNNNNGG 3 cut(s) 316, 434, 575
BseMII CTCAG 1 cut(s) 958
BseNI ACTGG 1 cut(s) 539
BseRI GAGGAG 2 cut(s) 417, 1134
BseSI GKGCMC 1 cut(s) 1033
BseXI GCAGC 1 cut(s) 1048
Bsh1236I CGCG 1 cut(s) 39
BshFI GGCC 2 cut(s) 460, 949
BsiHKAI GWGCWC 1 cut(s) 375
BsiSI CCGG 2 cut(s) 278, 1169
BslFI GGGAC 2 cut(s) 431, 844
BslI CCNNNNNNNGG 3 cut(s) 316, 434, 575
BsmAI GTCTC 1 cut(s) 337
BsmFI GGGAC 2 cut(s) 431, 844
BsnI GGCC 2 cut(s) 460, 949
Bsp1286I GDGCHC 2 cut(s) 375, 1033
Bsp13I TCCGGA 1 cut(s) 1168
BspANI GGCC 2 cut(s) 460, 949
BspCNI CTCAG 1 cut(s) 957
BspEI TCCGGA 1 cut(s) 1168
BspFNI CGCG 1 cut(s) 39
BspLI GGNNCC 6 cut(s) 100, 447, 461, 832, 902, 917
BspMI ACCTGC 1 cut(s) 657
BspPI GGATC 5 cut(s) 14, 910, 923, 1149, 1160
BspQI GCTCTTC 1 cut(s) 263
BsrI ACTGG 1 cut(s) 539
BssECI CCNNGG 1 cut(s) 569
Bst2UI CCWGG 3 cut(s) 570, 951, 1131
Bst4CI ACNGT 6 cut(s) 265, 679, 878, 1081, 1112, 1212
Bst6I CTCTTC 1 cut(s) 263
BstBAI YACGTR 1 cut(s) 674
BstC8I GCNNGC 2 cut(s) 209, 1201
BstDEI CTNAG 2 cut(s) 751, 944
BstENI CCTNNNNNAGG 2 cut(s) 432, 573
BstF5I GGATG 5 cut(s) 196, 220, 543, 1000, 1177
BstFNI CGCG 1 cut(s) 39
BstHHI GCGC 1 cut(s) 39
BstMAI GTCTC 1 cut(s) 337
BstMWI GCNNNNNNNGC 1 cut(s) 620
BstNI CCWGG 3 cut(s) 570, 951, 1131
BstNSI RCATGY 1 cut(s) 1048
BstSCI CCNGG 4 cut(s) 276, 568, 949, 1129
BstSLI GKGCMC 1 cut(s) 1033
BstSNI TACGTA 1 cut(s) 674
BstUI CGCG 1 cut(s) 39
BstV1I GCAGC 1 cut(s) 1048
BstX2I RGATCY 5 cut(s) 14, 152, 857, 915, 1003
BstXI CCANNNNNNTGG 2 cut(s) 456, 911
BstYI RGATCY 5 cut(s) 14, 152, 857, 915, 1003
BsuRI GGCC 2 cut(s) 460, 949
BtsCI GGATG 5 cut(s) 196, 220, 543, 1000, 1177
BtsIMutI CAGTG 2 cut(s) 270, 874
BveI ACCTGC 1 cut(s) 657
Cac8I GCNNGC 2 cut(s) 209, 1201
CfoI GCGC 1 cut(s) 39
Cfr13I GGNCC 3 cut(s) 445, 459, 831
Csp6I GTAC 4 cut(s) 439, 675, 967, 1213
CviAII CATG 3 cut(s) 122, 515, 1045
CviQI GTAC 4 cut(s) 439, 675, 967, 1213
DdeI CTNAG 2 cut(s) 751, 944
Eam1104I CTCTTC 1 cut(s) 263
EarI CTCTTC 1 cut(s) 263
Eco105I TACGTA 1 cut(s) 674
Eco47I GGWCC 2 cut(s) 445, 831
Eco57I CTGAAG 1 cut(s) 368
EcoNI CCTNNNNNAGG 2 cut(s) 432, 573
EcoO109I RGGNCCY 1 cut(s) 445
EcoRI GAATTC 1 cut(s) 804
EcoRII CCWGG 3 cut(s) 568, 949, 1129
FaeI CATG 3 cut(s) 125, 518, 1048
FalI AAGNNNNNCTT 6 cut(s) 341, 373, 829, 861, 844, 876
FaqI GGGAC 2 cut(s) 431, 844
FatI CATG 3 cut(s) 121, 514, 1044
FauNDI CATATG 1 cut(s) 985
FbaI TGATCA 1 cut(s) 42
Fnu4HI GCNGC 1 cut(s) 1062
FokI GGATG 5 cut(s) 203, 227, 550, 1007, 1184
Fsp4HI GCNGC 1 cut(s) 1062
FspBI CTAG 3 cut(s) 137, 827, 932
GlaI GCGC 1 cut(s) 38
GluI GCNGC 1 cut(s) 1062
GsuI CTGGAG 2 cut(s) 381, 960
HaeIII GGCC 2 cut(s) 460, 949
HapII CCGG 2 cut(s) 278, 1169
HhaI GCGC 1 cut(s) 39
Hin1II CATG 3 cut(s) 125, 518, 1048
Hin6I GCGC 1 cut(s) 37
HinP1I GCGC 1 cut(s) 37
HindIII AAGCTT 2 cut(s) 164, 1197
HinfI GANTC 4 cut(s) 218, 421, 466, 1072
HpaII CCGG 2 cut(s) 278, 1169
HphI GGTGA 4 cut(s) 37, 497, 563, 1200
Hpy188I TCNGA 6 cut(s) 19, 301, 526, 733, 1159, 1219
Hpy188III TCNNGA 6 cut(s) 137, 398, 470, 926, 977, 1169
HpyAV CCTTC 3 cut(s) 402, 656, 929
HpyCH4III ACNGT 6 cut(s) 265, 679, 878, 1081, 1112, 1212
HpyCH4IV ACGT 2 cut(s) 673, 687
HpyF10VI GCNNNNNNNGC 1 cut(s) 620
HpyF3I CTNAG 2 cut(s) 751, 944
HpySE526I ACGT 2 cut(s) 673, 687
Hsp92II CATG 3 cut(s) 125, 518, 1048
HspAI GCGC 1 cut(s) 37
Kpn2I TCCGGA 1 cut(s) 1168
Ksp22I TGATCA 1 cut(s) 42
LguI GCTCTTC 1 cut(s) 263
LmnI GCTCC 3 cut(s) 370, 596, 906
Lsp1109I GCAGC 1 cut(s) 1048
LweI GCATC 4 cut(s) 137, 778, 1162, 1212
MaeI CTAG 3 cut(s) 137, 827, 932
MaeII ACGT 2 cut(s) 673, 687
MaeIII GTNAC 3 cut(s) 259, 551, 669
MboII GAAGA 7 cut(s) 24, 213, 254, 280, 713, 914, 1013
MfeI CAATTG 2 cut(s) 412, 618
MflI RGATCY 5 cut(s) 14, 152, 857, 915, 1003
MhlI GDGCHC 2 cut(s) 375, 1033
MluCI AATT 5 cut(s) 412, 618, 785, 804, 891
MlyI GAGTC 1 cut(s) 475
MmeI TCCRAC 3 cut(s) 333, 549, 1031
MroI TCCGGA 1 cut(s) 1168
MroXI GAANNNNTTC 1 cut(s) 272
MspI CCGG 2 cut(s) 278, 1169
MspR9I CCNGG 4 cut(s) 278, 570, 951, 1131
MunI CAATTG 2 cut(s) 412, 618
MvaI CCWGG 3 cut(s) 570, 951, 1131
MvnI CGCG 1 cut(s) 39
MwoI GCNNNNNNNGC 1 cut(s) 620
NciI CCSGG 1 cut(s) 278
NdeI CATATG 1 cut(s) 985
NlaIII CATG 3 cut(s) 125, 518, 1048
NlaIV GGNNCC 6 cut(s) 100, 447, 461, 832, 902, 917
NmuCI GTSAC 1 cut(s) 551
NspI RCATGY 1 cut(s) 1048
PciSI GCTCTTC 1 cut(s) 263
PdmI GAANNNNTTC 1 cut(s) 272
PfeI GAWTC 3 cut(s) 218, 421, 1072
PkrI GCNGC 1 cut(s) 1063
PleI GAGTC 1 cut(s) 474
PpsI GAGTC 1 cut(s) 474
Ppu21I YACGTR 1 cut(s) 674
PpuMI RGGWCCY 1 cut(s) 445
PsiI TTATAA 1 cut(s) 740
Psp5II RGGWCCY 1 cut(s) 445
Psp6I CCWGG 3 cut(s) 568, 949, 1129
PspGI CCWGG 3 cut(s) 568, 949, 1129
PspN4I GGNNCC 6 cut(s) 100, 447, 461, 832, 902, 917
PspPI GGNCC 3 cut(s) 445, 459, 831
PspPPI RGGWCCY 1 cut(s) 445
PsuI RGATCY 5 cut(s) 14, 152, 857, 915, 1003
RsaI GTAC 4 cut(s) 440, 676, 968, 1214
RsaNI GTAC 4 cut(s) 439, 675, 967, 1213
SapI GCTCTTC 1 cut(s) 263
SatI GCNGC 1 cut(s) 1062
Sau96I GGNCC 3 cut(s) 445, 459, 831
SchI GAGTC 1 cut(s) 475
ScrFI CCNGG 4 cut(s) 278, 570, 951, 1131
SduI GDGCHC 2 cut(s) 375, 1033
SfaNI GCATC 4 cut(s) 137, 778, 1162, 1212
SinI GGWCC 2 cut(s) 445, 831
SmlI CTYRAG 1 cut(s) 926
SmoI CTYRAG 1 cut(s) 926
SnaBI TACGTA 1 cut(s) 674
Sse9I AATT 5 cut(s) 412, 618, 785, 804, 891
SspMI CTAG 3 cut(s) 137, 827, 932
StyD4I CCNGG 4 cut(s) 276, 568, 949, 1129
TaaI ACNGT 6 cut(s) 265, 679, 878, 1081, 1112, 1212
TaiI ACGT 2 cut(s) 676, 690
TaqI TCGA 1 cut(s) 469
TasI AATT 5 cut(s) 412, 618, 785, 804, 891
TfiI GAWTC 3 cut(s) 218, 421, 1072
TscAI CASTG 2 cut(s) 270, 881
TseFI GTSAC 1 cut(s) 551
TseI GCWGC 1 cut(s) 1061
Tsp45I GTSAC 1 cut(s) 551
TspDTI ATGAA 4 cut(s) 162, 231, 489, 675
TspRI CASTG 2 cut(s) 270, 881
VpaK11BI GGWCC 2 cut(s) 445, 831
XagI CCTNNNNNAGG 2 cut(s) 432, 573
XapI RAATTY 1 cut(s) 804
XbaI TCTAGA 1 cut(s) 136
XceI RCATGY 1 cut(s) 1048
XmnI GAANNNNTTC 1 cut(s) 272
XspI CTAG 3 cut(s) 137, 827, 932
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.