Rmu_sc0008931.1_g000001

Putative S-adenosyl-L-methionine-dependent methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008931.1
OG0000529
Physical Location & Seq
Reverse (-)
167 .. 2181
2015 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008931.1_g000001.1.cds

Sequence Viewer

Length: 1077 bp
atgatgaggggaagatctgatccagcccaacagaagcgcgtgatcaccattctgtgtgttttggcactctttcgtgttttcctgtatgggaattatggttccatctttggctctcaaagtcatggtgcatcagctctagaatatggcagtagatctttgagaaagcttggttcatcttatttgggtggggatgatgataccgatggcaagctggatgaatcttcaacaaagtatgggcaggaagatggagatgatgatgttacagtgaagagctttcccggtatccttctaaatttgtctgctgatgaattttgttttttcaagggtacaaggtcccaatcaaatggccccagagcagagatgaagtatggaaagcaaatatacctcatactcaccttgcacatgagaaatctgaccagaactggatggttgaaaaaggtgacaagattagttttcctgggggaggcacacattttcactatggagctgataagtatattgcttcaattgcaaatgttacgtacagtttttgacgttggctgtggagttgcaagttttggaggctatcttctgtcatctgatattataacaatgtccttagcggccaatgatgtgcatcaaaatcaaatccaatttgctttggaaagaggaattccagcatatcttggtgttctagggaccaaaaggcttccttacccaagcagatcttttgaacttgctcactgttcccgttgtagaattgattggctccaaagagatgggatccttcttcttgagctagataggttactcaggccaggaggctactttgcgtactcatctccagaagcatatgcacaggatgaggaagatctcaaaatatggaaagagatgagtgcccttgtggaacgcatgtgttggagaatagctgcaaaaaggaaccaaactgtcatttggcagaaaccactaacaaatgactgttatatgcaaagagaacctggcactcaacctcctctctgccgatctgatgatgatccagatgcaatctgggctgcgccaatggaagcttgcatctcaccgtactctgatcgcaagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Methyltransf_29 zf-C3HC4_3

Protein Analysis

358

Amino Acids

40.38

Weight (kDa)

6.95

Isoelectric Point (pI)

43.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000529)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04430 AT1G04430 AT1G04430 AT3G23300 AT3G23300 AT4G14360 AT4G14360
fragaria_vesca FvH4_2g21260 FvH4_2g21260 FvH4_2g21260 FvH4_4g03770 FvH4_4g03770 FvH4_4g03770 FvH4_4g03770 FvH4_4g03770 FvH4_4g03770
malus_domestica MD05G1195000.v1.1 MD10G1181600.v1.1 MD10G1182100.v1.1 MD13G1215000.v1.1
prunus_persica Prupe.1G040400_v2.0.a1 Prupe.1G040400_v2.0.a1 Prupe.1G040400_v2.0.a1 Prupe.1G040400_v2.0.a1 Prupe.8G221700_v2.0.a1 Prupe.8G221700_v2.0.a1 Prupe.8G221700_v2.0.a1
pyrus_communis pycom05g18230 pycom10g15760 pycom10g15770 pycom111g01800
rosa_chinensis RchiOBHm_Chr4g0393501 RchiOBHm_Chr4g0393511 RchiOBHm_Chr4g0393631 RchiOBHm_Chr6g0287841
rosa_laevigata RLG00000009742 RLG00000012463
rosa_multiflora Rmu_sc0001531.1_g000028 Rmu_sc0003877.1_g000004 Rmu_sc0007724.1_g000003 Rmu_sc0008931.1_g000001 Rmu_sc0015036.1_g000004 Rmu_sc0021463.1_g000002 Rmu_sc0023299.1_g000001 Rmu_sc0023300.1_g000001 Rmu_sc0036005.1_g000001
rosa_roxburghii Rroxscaffold_5G00338440 Rroxscaffold_5G00338470 Rroxscaffold_5G00338730 Rroxscaffold_5G00338790 Rroxscaffold_7G00180730 Rroxscaffold_7G00180820
rosa_rugosa Rorug03G0372400 Rorug03G0372500 Rorug03G0372600 Rorug04G0000100 Rorug04G0000200 Rorug04G0000300 Rorug04G0000400 Rorug04G0000500 Rorug04G0000600.1 Rorug04G0000700 Rorug04G0000800 Rorug04G0000900 Rorug06G0192300 Rorug06G0192400 Rorug06G0192500
rosa_samantha Rh4AG047800 Rh4AG048100 Rh4BG043700 Rh4BG044600 Rh4CG050500 Rh4CG050600 Rh4CG050700 Rh4CG051400 Rh4DG045000 Rh4DG045300 Rh6AG302000 Rh6BG307900 Rh6CG301600 Rh6CG315800 Rh6DG300500
rosa_wichuraiana Rw4G003770 Rw4G003800 Rw6G026090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 587
AccII CGCG 1 cut(s) 39
AciI CCGC 1 cut(s) 602
AclWI GGATC 4 cut(s) 14, 757, 770, 1007
AcoI YGGCCR 1 cut(s) 603
AcsI RAATTY 3 cut(s) 292, 308, 651
AfaI GTAC 4 cut(s) 328, 523, 815, 1061
AfiI CCNNNNNNNGG 1 cut(s) 463
AgsI TTSAA 5 cut(s) 225, 322, 433, 506, 713
AjnI CCWGG 3 cut(s) 456, 796, 976
AloI GAACNNNNNNTCC 2 cut(s) 82, 114
AluBI AGCT 8 cut(s) 134, 166, 211, 273, 487, 778, 908, 1046
AluI AGCT 8 cut(s) 134, 166, 211, 273, 487, 778, 908, 1046
AlwI GGATC 4 cut(s) 14, 757, 770, 1007
AoxI GGCC 3 cut(s) 346, 603, 794
ApeKI GCWGC 2 cut(s) 908, 1031
ApoI RAATTY 3 cut(s) 292, 308, 651
AspLEI GCGC 2 cut(s) 39, 1036
AspS9I GGNCC 3 cut(s) 333, 347, 678
AsuC2I CCSGG 1 cut(s) 279
AsuHPI GGTGA 4 cut(s) 37, 385, 451, 1047
AvaII GGWCC 2 cut(s) 333, 678
BaeGI GKGCMC 1 cut(s) 880
BamHI GGATCC 1 cut(s) 762
BbvI GCAGC 2 cut(s) 895, 1018
BccI CCATC 5 cut(s) 110, 197, 239, 420, 752
BciT130I CCWGG 3 cut(s) 458, 798, 978
BciVI GTATCC 1 cut(s) 293
BclI TGATCA 1 cut(s) 42
BcnI CCSGG 1 cut(s) 279
BfaI CTAG 3 cut(s) 137, 674, 779
BfuI GTATCC 1 cut(s) 293
BglII AGATCT 4 cut(s) 14, 152, 704, 850
BisI GCNGC 3 cut(s) 603, 909, 1032
BlsI GCNGC 3 cut(s) 604, 910, 1033
Bme1390I CCNGG 4 cut(s) 279, 458, 798, 978
Bme18I GGWCC 2 cut(s) 333, 678
BmgT120I GGNCC 3 cut(s) 333, 347, 678
BmiI GGNNCC 7 cut(s) 100, 335, 349, 679, 749, 764, 920
BmrFI CCNGG 4 cut(s) 279, 458, 798, 978
BmsI GCATC 4 cut(s) 137, 625, 1009, 1059
BpmI CTGGAG 1 cut(s) 807
Bpu10I CCTNAGC 1 cut(s) 598
BpuEI CTTGAG 1 cut(s) 794
BpuMI CCSGG 1 cut(s) 279
BsaAI YACGTR 1 cut(s) 521
BsaBI GATNNNNATC 2 cut(s) 615, 1011
BsaJI CCNNGG 1 cut(s) 457
BsaXI ACNNNNNCTCC 2 cut(s) 973, 1003
Bsc4I CCNNNNNNNGG 1 cut(s) 463
Bse1I ACTGG 1 cut(s) 427
Bse8I GATNNNNATC 2 cut(s) 615, 1011
BseBI CCWGG 3 cut(s) 458, 798, 978
BseDI CCNNGG 1 cut(s) 457
BseGI GGATG 4 cut(s) 196, 220, 431, 847
BseJI GATNNNNATC 2 cut(s) 615, 1011
BseLI CCNNNNNNNGG 1 cut(s) 463
BseMII CTCAG 1 cut(s) 805
BseNI ACTGG 1 cut(s) 427
BseRI GAGGAG 1 cut(s) 981
BseSI GKGCMC 1 cut(s) 880
BseXI GCAGC 2 cut(s) 895, 1018
Bsh1236I CGCG 1 cut(s) 39
BshFI GGCC 3 cut(s) 348, 605, 796
BsiSI CCGG 1 cut(s) 279
BslFI GGGAC 2 cut(s) 319, 691
BslI CCNNNNNNNGG 1 cut(s) 463
BsmFI GGGAC 2 cut(s) 319, 691
BsnI GGCC 3 cut(s) 348, 605, 796
Bsp1286I GDGCHC 1 cut(s) 880
BspACI CCGC 1 cut(s) 602
BspANI GGCC 3 cut(s) 348, 605, 796
BspCNI CTCAG 1 cut(s) 804
BspFNI CGCG 1 cut(s) 39
BspLI GGNNCC 7 cut(s) 100, 335, 349, 679, 749, 764, 920
BspPI GGATC 4 cut(s) 14, 757, 770, 1007
BspQI GCTCTTC 1 cut(s) 263
BsrI ACTGG 1 cut(s) 427
BssECI CCNNGG 1 cut(s) 457
Bst2UI CCWGG 3 cut(s) 458, 798, 978
Bst4CI ACNGT 6 cut(s) 265, 526, 725, 928, 959, 1059
Bst6I CTCTTC 1 cut(s) 263
BstBAI YACGTR 1 cut(s) 521
BstC8I GCNNGC 2 cut(s) 209, 1048
BstDEI CTNAG 2 cut(s) 598, 791
BstENI CCTNNNNNAGG 1 cut(s) 461
BstF5I GGATG 4 cut(s) 196, 220, 431, 847
BstFNI CGCG 1 cut(s) 39
BstHHI GCGC 2 cut(s) 39, 1036
BstMWI GCNNNNNNNGC 2 cut(s) 508, 1028
BstNI CCWGG 3 cut(s) 458, 798, 978
BstNSI RCATGY 1 cut(s) 895
BstSCI CCNGG 4 cut(s) 277, 456, 796, 976
BstSLI GKGCMC 1 cut(s) 880
BstSNI TACGTA 1 cut(s) 521
BstUI CGCG 1 cut(s) 39
BstV1I GCAGC 2 cut(s) 895, 1018
BstX2I RGATCY 5 cut(s) 14, 152, 704, 762, 850
BstXI CCANNNNNNTGG 2 cut(s) 344, 758
BstYI RGATCY 5 cut(s) 14, 152, 704, 762, 850
BsuI GTATCC 1 cut(s) 293
BsuRI GGCC 3 cut(s) 348, 605, 796
BtsCI GGATG 4 cut(s) 196, 220, 431, 847
BtsIMutI CAGTG 2 cut(s) 270, 721
Cac8I GCNNGC 2 cut(s) 209, 1048
CfoI GCGC 2 cut(s) 39, 1036
Cfr13I GGNCC 3 cut(s) 333, 347, 678
Csp6I GTAC 4 cut(s) 327, 522, 814, 1060
CviAII CATG 3 cut(s) 122, 403, 892
CviQI GTAC 4 cut(s) 327, 522, 814, 1060
DdeI CTNAG 2 cut(s) 598, 791
EaeI YGGCCR 1 cut(s) 603
Eam1104I CTCTTC 1 cut(s) 263
EarI CTCTTC 1 cut(s) 263
Eco105I TACGTA 1 cut(s) 521
Eco47I GGWCC 2 cut(s) 333, 678
EcoNI CCTNNNNNAGG 1 cut(s) 461
EcoO109I RGGNCCY 1 cut(s) 333
EcoRI GAATTC 1 cut(s) 651
EcoRII CCWGG 3 cut(s) 456, 796, 976
FaeI CATG 3 cut(s) 125, 406, 895
FalI AAGNNNNNCTT 4 cut(s) 676, 708, 691, 723
FaqI GGGAC 2 cut(s) 319, 691
FatI CATG 3 cut(s) 121, 402, 891
FauNDI CATATG 1 cut(s) 832
FbaI TGATCA 1 cut(s) 42
Fnu4HI GCNGC 3 cut(s) 603, 909, 1032
FokI GGATG 4 cut(s) 203, 227, 438, 854
Fsp4HI GCNGC 3 cut(s) 603, 909, 1032
FspBI CTAG 3 cut(s) 137, 674, 779
GlaI GCGC 2 cut(s) 38, 1035
GluI GCNGC 3 cut(s) 603, 909, 1032
GsuI CTGGAG 1 cut(s) 807
HaeIII GGCC 3 cut(s) 348, 605, 796
HapII CCGG 1 cut(s) 279
HhaI GCGC 2 cut(s) 39, 1036
Hin1II CATG 3 cut(s) 125, 406, 895
Hin6I GCGC 2 cut(s) 37, 1034
HinP1I GCGC 2 cut(s) 37, 1034
HindIII AAGCTT 2 cut(s) 164, 1044
HinfI GANTC 1 cut(s) 218
HpaII CCGG 1 cut(s) 279
HphI GGTGA 4 cut(s) 37, 385, 451, 1047
Hpy188I TCNGA 5 cut(s) 19, 414, 580, 1006, 1066
Hpy188III TCNNGA 4 cut(s) 137, 773, 824, 1016
HpyAV CCTTC 2 cut(s) 296, 776
HpyCH4III ACNGT 6 cut(s) 265, 526, 725, 928, 959, 1059
HpyCH4IV ACGT 2 cut(s) 520, 534
HpyF10VI GCNNNNNNNGC 2 cut(s) 508, 1028
HpyF3I CTNAG 2 cut(s) 598, 791
HpySE526I ACGT 2 cut(s) 520, 534
Hsp92II CATG 3 cut(s) 125, 406, 895
HspAI GCGC 2 cut(s) 37, 1034
Ksp22I TGATCA 1 cut(s) 42
LguI GCTCTTC 1 cut(s) 263
LmnI GCTCC 2 cut(s) 484, 753
Lsp1109I GCAGC 2 cut(s) 895, 1018
LweI GCATC 4 cut(s) 137, 625, 1009, 1059
MaeI CTAG 3 cut(s) 137, 674, 779
MaeII ACGT 2 cut(s) 520, 534
MaeIII GTNAC 4 cut(s) 259, 439, 516, 786
MboII GAAGA 7 cut(s) 24, 213, 254, 280, 560, 761, 860
MfeI CAATTG 1 cut(s) 506
MflI RGATCY 5 cut(s) 14, 152, 704, 762, 850
MhlI GDGCHC 1 cut(s) 880
MluCI AATT 7 cut(s) 91, 292, 308, 506, 632, 651, 738
MmeI TCCRAC 1 cut(s) 878
MnlI CCTC 8 cut(s) 395, 457, 554, 641, 794, 838, 999, 1002
MspI CCGG 1 cut(s) 279
MspR9I CCNGG 4 cut(s) 279, 458, 798, 978
MunI CAATTG 1 cut(s) 506
MvaI CCWGG 3 cut(s) 458, 798, 978
MvnI CGCG 1 cut(s) 39
MwoI GCNNNNNNNGC 2 cut(s) 508, 1028
NciI CCSGG 1 cut(s) 279
NdeI CATATG 1 cut(s) 832
NlaIII CATG 3 cut(s) 125, 406, 895
NlaIV GGNNCC 7 cut(s) 100, 335, 349, 679, 749, 764, 920
NmuCI GTSAC 1 cut(s) 439
NspI RCATGY 1 cut(s) 895
PciSI GCTCTTC 1 cut(s) 263
PfeI GAWTC 1 cut(s) 218
PkrI GCNGC 3 cut(s) 604, 910, 1033
Ppu21I YACGTR 1 cut(s) 521
PpuMI RGGWCCY 1 cut(s) 333
PsiI TTATAA 1 cut(s) 587
Psp5II RGGWCCY 1 cut(s) 333
Psp6I CCWGG 3 cut(s) 456, 796, 976
PspGI CCWGG 3 cut(s) 456, 796, 976
PspN4I GGNNCC 7 cut(s) 100, 335, 349, 679, 749, 764, 920
PspPI GGNCC 3 cut(s) 333, 347, 678
PspPPI RGGWCCY 1 cut(s) 333
PsuI RGATCY 5 cut(s) 14, 152, 704, 762, 850
RsaI GTAC 4 cut(s) 328, 523, 815, 1061
RsaNI GTAC 4 cut(s) 327, 522, 814, 1060
SapI GCTCTTC 1 cut(s) 263
SatI GCNGC 3 cut(s) 603, 909, 1032
Sau96I GGNCC 3 cut(s) 333, 347, 678
ScrFI CCNGG 4 cut(s) 279, 458, 798, 978
SduI GDGCHC 1 cut(s) 880
SfaNI GCATC 4 cut(s) 137, 625, 1009, 1059
SinI GGWCC 2 cut(s) 333, 678
SmlI CTYRAG 1 cut(s) 773
SmoI CTYRAG 1 cut(s) 773
SnaBI TACGTA 1 cut(s) 521
Sse9I AATT 7 cut(s) 91, 292, 308, 506, 632, 651, 738
SsiI CCGC 1 cut(s) 602
SspMI CTAG 3 cut(s) 137, 674, 779
StyD4I CCNGG 4 cut(s) 277, 456, 796, 976
TaaI ACNGT 6 cut(s) 265, 526, 725, 928, 959, 1059
TaiI ACGT 2 cut(s) 523, 537
TasI AATT 7 cut(s) 91, 292, 308, 506, 632, 651, 738
TauI GCSGC 1 cut(s) 605
TfiI GAWTC 1 cut(s) 218
TscAI CASTG 2 cut(s) 270, 728
TseFI GTSAC 1 cut(s) 439
TseI GCWGC 2 cut(s) 908, 1031
Tsp45I GTSAC 1 cut(s) 439
TspDTI ATGAA 4 cut(s) 162, 231, 321, 377
TspRI CASTG 2 cut(s) 270, 728
VpaK11BI GGWCC 2 cut(s) 333, 678
XagI CCTNNNNNAGG 1 cut(s) 461
XapI RAATTY 3 cut(s) 292, 308, 651
XbaI TCTAGA 1 cut(s) 136
XceI RCATGY 1 cut(s) 895
XcmI CCANNNNNNNNNTGG 1 cut(s) 1023
XspI CTAG 3 cut(s) 137, 674, 779
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.