Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0000529

Physical Location & Seq

Genomic Coordinates Forward (+)

10130865 .. 10132293

Gene Structure 1429 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG050600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGAGACTAAAGTTGGACCTGTCTTTGATGGAGCACTATGAGAGGCATTGTCCTTCTCCAGAAAGGTCCCAATCAAATGGCCCCAGAGCAGAGATGAAGTATGGAAAGCAAATATACCTCATACTCACCTTGCACATGAGAAATCTGACCAGAACTGGATGGTTGAAAAAGGTGACAAGATTAGTTTTCCTGGGGGAGGCACACATTTTCACTATGGAGCTGATAAGTATATTGCTTCAATTGCAAATGTTACGTACAGTTTTTGACGTTGGCTGTGGAGTTGCAAGTTTTGGAGGCTATCTTCTGTCATCTGATATTATAACAATGTCCTTAGCACCCAATGATGTTCATCAAAATCAAATCCAATTTGCTTTGGAAAGAGGAATTCCAGCATATCTCGGTGTTCTAGGGACCAAAAGGCTTCCTTACCCAAGCAGATCTTTTGAACTTGCTCACTGTTCCCGTTGTAGAATTGATTGGCTCCAAAGAGGTGGGATCCTTCTTCTTGAGCTAGAGAGGTTGCTCAGGCCAGGAGGCTACTTTGCGTACTCATCTCCAGAAGCATATGCAGAGGGTGAGGAAGATCTCAAAATATGGAAAGAGATGAGTGCCCTTGTGGAATGCATGTGTTGGAGAATAGCTGCAAAAAGGAACCAACTGTCATTTGGCAGAAACCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005773 GO:0005774 GO:0005794 GO:0005802 GO:0005911 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009506 GO:0012505 GO:0016020 GO:0016740 GO:0016741 GO:0030054 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0032259 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0055044 GO:0097708 GO:0098588 GO:0098791 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_29

Protein Analysis

226

Amino Acids

25.97

Weight (kDa)

9.05

Isoelectric Point (pI)

54.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_29	PF03141	77 - 220	1.6e-68	Putative S-adenosyl-L-methionine-dependent methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000529)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04430 AT1G04430 AT1G04430 AT3G23300 AT3G23300 AT4G14360 AT4G14360
fragaria_vesca	FvH4_2g21260 FvH4_2g21260 FvH4_2g21260 FvH4_4g03770 FvH4_4g03770 FvH4_4g03770 FvH4_4g03770 FvH4_4g03770 FvH4_4g03770
malus_domestica	MD05G1195000.v1.1 MD10G1181600.v1.1 MD10G1182100.v1.1 MD13G1215000.v1.1
prunus_persica	Prupe.1G040400_v2.0.a1 Prupe.1G040400_v2.0.a1 Prupe.1G040400_v2.0.a1 Prupe.1G040400_v2.0.a1 Prupe.8G221700_v2.0.a1 Prupe.8G221700_v2.0.a1 Prupe.8G221700_v2.0.a1
pyrus_communis	pycom05g18230 pycom10g15760 pycom10g15770 pycom111g01800
rosa_chinensis	RchiOBHm_Chr4g0393501 RchiOBHm_Chr4g0393511 RchiOBHm_Chr4g0393631 RchiOBHm_Chr6g0287841
rosa_laevigata	RLG00000009742 RLG00000012463
rosa_multiflora	Rmu_sc0001531.1_g000028 Rmu_sc0003877.1_g000004 Rmu_sc0007724.1_g000003 Rmu_sc0008931.1_g000001 Rmu_sc0015036.1_g000004 Rmu_sc0021463.1_g000002 Rmu_sc0023299.1_g000001 Rmu_sc0023300.1_g000001 Rmu_sc0036005.1_g000001
rosa_roxburghii	Rroxscaffold_5G00338440 Rroxscaffold_5G00338470 Rroxscaffold_5G00338730 Rroxscaffold_5G00338790 Rroxscaffold_7G00180730 Rroxscaffold_7G00180820
rosa_rugosa	Rorug03G0372400 Rorug03G0372500 Rorug03G0372600 Rorug04G0000100 Rorug04G0000200 Rorug04G0000300 Rorug04G0000400 Rorug04G0000500 Rorug04G0000600.1 Rorug04G0000700 Rorug04G0000800 Rorug04G0000900 Rorug06G0192300 Rorug06G0192400 Rorug06G0192500
rosa_samantha	Rh4AG047800 Rh4AG048100 Rh4BG043700 Rh4BG044600 Rh4CG050500 Rh4CG050600 Rh4CG050700 Rh4CG051400 Rh4DG045000 Rh4DG045300 Rh6AG302000 Rh6BG307900 Rh6CG301600 Rh6CG315800 Rh6DG300500
rosa_wichuraiana	Rw4G003770 Rw4G003800 Rw6G026090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	320
AclWI	GGATC	2 cut(s)	490, 503
AcsI	RAATTY	1 cut(s)	384
AfaI	GTAC	2 cut(s)	256, 548
AfiI	CCNNNNNNNGG	1 cut(s)	196
AgsI	TTSAA	3 cut(s)	166, 239, 446
AjnI	CCWGG	2 cut(s)	189, 529
AluBI	AGCT	3 cut(s)	220, 511, 641
AluI	AGCT	3 cut(s)	220, 511, 641
Alw21I	GWGCWC	1 cut(s)	36
AlwI	GGATC	2 cut(s)	490, 503
AoxI	GGCC	2 cut(s)	79, 527
ApeKI	GCWGC	1 cut(s)	641
ApoI	RAATTY	1 cut(s)	384
AspS9I	GGNCC	4 cut(s)	16, 66, 80, 411
AsuHPI	GGTGA	3 cut(s)	118, 184, 587
AvaII	GGWCC	3 cut(s)	16, 66, 411
BaeGI	GKGCMC	1 cut(s)	613
BamHI	GGATCC	1 cut(s)	495
Bbv12I	GWGCWC	1 cut(s)	36
BbvI	GCAGC	1 cut(s)	628
BccI	CCATC	2 cut(s)	22, 153
BciT130I	CCWGG	2 cut(s)	191, 531
BfaI	CTAG	2 cut(s)	407, 512
BglII	AGATCT	2 cut(s)	437, 583
BisI	GCNGC	1 cut(s)	642
BlsI	GCNGC	1 cut(s)	643
Bme1390I	CCNGG	2 cut(s)	191, 531
Bme18I	GGWCC	3 cut(s)	16, 66, 411
BmgT120I	GGNCC	4 cut(s)	16, 66, 80, 411
BmiI	GGNNCC	6 cut(s)	68, 82, 412, 482, 497, 653
BmrFI	CCNGG	2 cut(s)	191, 531
BpmI	CTGGAG	2 cut(s)	42, 540
Bpu10I	CCTNAGC	2 cut(s)	331, 524
BpuEI	CTTGAG	1 cut(s)	527
BsaAI	YACGTR	1 cut(s)	254
BsaBI	GATNNNNATC	1 cut(s)	348
BsaJI	CCNNGG	1 cut(s)	190
Bsc4I	CCNNNNNNNGG	1 cut(s)	196
Bse1I	ACTGG	1 cut(s)	160
Bse8I	GATNNNNATC	1 cut(s)	348
BseBI	CCWGG	2 cut(s)	191, 531
BseDI	CCNNGG	1 cut(s)	190
BseGI	GGATG	1 cut(s)	164
BseJI	GATNNNNATC	1 cut(s)	348
BseLI	CCNNNNNNNGG	1 cut(s)	196
BseMII	CTCAG	1 cut(s)	538
BseNI	ACTGG	1 cut(s)	160
BseSI	GKGCMC	1 cut(s)	613
BseXI	GCAGC	1 cut(s)	628
BshFI	GGCC	2 cut(s)	81, 529
BsiHKAI	GWGCWC	1 cut(s)	36
BslFI	GGGAC	2 cut(s)	52, 424
BslI	CCNNNNNNNGG	1 cut(s)	196
BsmFI	GGGAC	2 cut(s)	52, 424
BsmI	GAATGC	1 cut(s)	626
BsnI	GGCC	2 cut(s)	81, 529
Bsp1286I	GDGCHC	2 cut(s)	36, 613
Bsp143I	GATC	3 cut(s)	437, 495, 583
BspANI	GGCC	2 cut(s)	81, 529
BspCNI	CTCAG	1 cut(s)	537
BspLI	GGNNCC	6 cut(s)	68, 82, 412, 482, 497, 653
BspPI	GGATC	2 cut(s)	490, 503
BsrI	ACTGG	1 cut(s)	160
BssECI	CCNNGG	1 cut(s)	190
BssMI	GATC	3 cut(s)	437, 495, 583
Bst2UI	CCWGG	2 cut(s)	191, 531
Bst4CI	ACNGT	3 cut(s)	259, 458, 660
BstBAI	YACGTR	1 cut(s)	254
BstDEI	CTNAG	2 cut(s)	331, 524
BstENI	CCTNNNNNAGG	1 cut(s)	194
BstF5I	GGATG	1 cut(s)	164
BstKTI	GATC	3 cut(s)	440, 498, 586
BstMBI	GATC	3 cut(s)	437, 495, 583
BstMWI	GCNNNNNNNGC	1 cut(s)	241
BstNI	CCWGG	2 cut(s)	191, 531
BstNSI	RCATGY	1 cut(s)	628
BstSCI	CCNGG	2 cut(s)	189, 529
BstSLI	GKGCMC	1 cut(s)	613
BstSNI	TACGTA	1 cut(s)	254
BstV1I	GCAGC	1 cut(s)	628
BstX2I	RGATCY	3 cut(s)	437, 495, 583
BstXI	CCANNNNNNTGG	2 cut(s)	77, 491
BstYI	RGATCY	3 cut(s)	437, 495, 583
BsuRI	GGCC	2 cut(s)	81, 529
BtsCI	GGATG	1 cut(s)	164
BtsIMutI	CAGTG	1 cut(s)	454
Cfr13I	GGNCC	4 cut(s)	16, 66, 80, 411
Csp6I	GTAC	2 cut(s)	255, 547
CviAII	CATG	2 cut(s)	136, 625
CviQI	GTAC	2 cut(s)	255, 547
DdeI	CTNAG	2 cut(s)	331, 524
DpnI	GATC	3 cut(s)	439, 497, 585
DpnII	GATC	3 cut(s)	437, 495, 583
Eco105I	TACGTA	1 cut(s)	254
Eco47I	GGWCC	3 cut(s)	16, 66, 411
EcoNI	CCTNNNNNAGG	1 cut(s)	194
EcoO109I	RGGNCCY	1 cut(s)	66
EcoRI	GAATTC	1 cut(s)	384
EcoRII	CCWGG	2 cut(s)	189, 529
EcoT22I	ATGCAT	1 cut(s)	626
FaeI	CATG	2 cut(s)	139, 628
FalI	AAGNNNNNCTT	4 cut(s)	409, 441, 424, 456
FaqI	GGGAC	2 cut(s)	52, 424
FatI	CATG	2 cut(s)	135, 624
FauNDI	CATATG	1 cut(s)	565
Fnu4HI	GCNGC	1 cut(s)	642
FokI	GGATG	1 cut(s)	171
Fsp4HI	GCNGC	1 cut(s)	642
FspBI	CTAG	2 cut(s)	407, 512
GluI	GCNGC	1 cut(s)	642
GsuI	CTGGAG	2 cut(s)	42, 540
HaeIII	GGCC	2 cut(s)	81, 529
Hin1II	CATG	2 cut(s)	139, 628
HphI	GGTGA	3 cut(s)	118, 184, 587
Hpy188I	TCNGA	2 cut(s)	147, 313
Hpy188III	TCNNGA	3 cut(s)	59, 506, 557
HpyAV	CCTTC	2 cut(s)	63, 509
HpyCH4III	ACNGT	3 cut(s)	259, 458, 660
HpyCH4IV	ACGT	2 cut(s)	253, 267
HpyCH4V	TGCA	6 cut(s)	133, 244, 284, 569, 624, 644
HpyF10VI	GCNNNNNNNGC	1 cut(s)	241
HpyF3I	CTNAG	2 cut(s)	331, 524
HpySE526I	ACGT	2 cut(s)	253, 267
Hsp92II	CATG	2 cut(s)	139, 628
Kzo9I	GATC	3 cut(s)	437, 495, 583
LmnI	GCTCC	3 cut(s)	31, 217, 486
Lsp1109I	GCAGC	1 cut(s)	628
MaeI	CTAG	2 cut(s)	407, 512
MaeII	ACGT	2 cut(s)	253, 267
MaeIII	GTNAC	2 cut(s)	172, 249
MalI	GATC	3 cut(s)	439, 497, 585
MboI	GATC	3 cut(s)	437, 495, 583
MboII	GAAGA	3 cut(s)	293, 494, 593
MfeI	CAATTG	1 cut(s)	239
MflI	RGATCY	3 cut(s)	437, 495, 583
MhlI	GDGCHC	2 cut(s)	36, 613
MluCI	AATT	4 cut(s)	239, 365, 384, 471
MmeI	TCCRAC	1 cut(s)	611
Mph1103I	ATGCAT	1 cut(s)	626
MspR9I	CCNGG	2 cut(s)	191, 531
MunI	CAATTG	1 cut(s)	239
Mva1269I	GAATGC	1 cut(s)	626
MvaI	CCWGG	2 cut(s)	191, 531
MwoI	GCNNNNNNNGC	1 cut(s)	241
NdeI	CATATG	1 cut(s)	565
NdeII	GATC	3 cut(s)	437, 495, 583
NlaIII	CATG	2 cut(s)	139, 628
NlaIV	GGNNCC	6 cut(s)	68, 82, 412, 482, 497, 653
NmuCI	GTSAC	1 cut(s)	172
NsiI	ATGCAT	1 cut(s)	626
NspI	RCATGY	1 cut(s)	628
PctI	GAATGC	1 cut(s)	626
PkrI	GCNGC	1 cut(s)	643
Ppu21I	YACGTR	1 cut(s)	254
PpuMI	RGGWCCY	1 cut(s)	66
PsiI	TTATAA	1 cut(s)	320
Psp5II	RGGWCCY	1 cut(s)	66
Psp6I	CCWGG	2 cut(s)	189, 529
PspGI	CCWGG	2 cut(s)	189, 529
PspN4I	GGNNCC	6 cut(s)	68, 82, 412, 482, 497, 653
PspPI	GGNCC	4 cut(s)	16, 66, 80, 411
PspPPI	RGGWCCY	1 cut(s)	66
PsuI	RGATCY	3 cut(s)	437, 495, 583
RsaI	GTAC	2 cut(s)	256, 548
RsaNI	GTAC	2 cut(s)	255, 547
SatI	GCNGC	1 cut(s)	642
Sau3AI	GATC	3 cut(s)	437, 495, 583
Sau96I	GGNCC	4 cut(s)	16, 66, 80, 411
ScrFI	CCNGG	2 cut(s)	191, 531
SduI	GDGCHC	2 cut(s)	36, 613
SinI	GGWCC	3 cut(s)	16, 66, 411
SmlI	CTYRAG	1 cut(s)	506
SmoI	CTYRAG	1 cut(s)	506
SnaBI	TACGTA	1 cut(s)	254
Sse9I	AATT	4 cut(s)	239, 365, 384, 471
SspMI	CTAG	2 cut(s)	407, 512
StyD4I	CCNGG	2 cut(s)	189, 529
TaaI	ACNGT	3 cut(s)	259, 458, 660
TaiI	ACGT	2 cut(s)	256, 270
TasI	AATT	4 cut(s)	239, 365, 384, 471
TscAI	CASTG	1 cut(s)	461
TseFI	GTSAC	1 cut(s)	172
TseI	GCWGC	1 cut(s)	641
Tsp45I	GTSAC	1 cut(s)	172
TspDTI	ATGAA	2 cut(s)	110, 338
TspRI	CASTG	1 cut(s)	461
VpaK11BI	GGWCC	3 cut(s)	16, 66, 411
XagI	CCTNNNNNAGG	1 cut(s)	194
XapI	RAATTY	1 cut(s)	384
XceI	RCATGY	1 cut(s)	628
XcmI	CCANNNNNNNNNTGG	1 cut(s)	662
XspI	CTAG	2 cut(s)	407, 512
Zsp2I	ATGCAT	1 cut(s)	626

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.