Rorug03G0372600

Putative S-adenosyl-L-methionine-dependent methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000529
Physical Location & Seq
Reverse (-)
45867248 .. 45874739
7492 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0372600.1

Sequence Viewer

Length: 1671 bp
ATGTCGATCCAAGTTGGTCCGACTGTTGAGCTAGAAAACACCATGCCTGAAATTGCTCATCCAAAGACAAGTTTTCAACCAGGCATTTCCATAGATGGGTTCATCAACTGTCATTCCCTCGACAGCATAACTCATGCTCGTATGCAACAGCAAATTGACGAACTGAAAGTACTAGTGAAGGAAGAAGTTTTCGCATCATATGATGTTTCATATCAGTTGAAATTAATTGATGAAATCCAACGCCTAGGTGTGGCATACCATTTTGAAACAGAAATAGATGAAGCACTAGAAAATATCTATGTTAAATACCATGATGATGGTGATCTGGACCTATACAATGTTTCTCTTCGTTTTCGTCTACTAAGACAAAATGGATATAATGTTTCATCTGATATATTCAGCAAATTTAAAGATGTAAACAGTTACTTCAAGGAGAGCTTAATTGCTGATATCTTAGCTATCCTATGCTTGTATGAGGCAACACATCTTAGGGTTCATGGAGAAGAAATACTAGAAGAAGCTCTTGTTTTCACCACCACCCACCTTGAATTGGCGATAAGTGGTGTAAGCTATCCACTAGCTGCAAAAATATCTCAAGCCCTAGAGAGGCCTCTGCGTAAAGGTCTAGAGAGGTTATGTACCAGGAATTACATACCAATCTACGAAGCCATGACTCCGCATAACGAAGCGCTACTGAAACTTGCGAAGTTAGATTTCAATCTGGTTCAATCTTTGCACAAAGAGGAGCTTAGTGAGGTTTCAAGGTGGGGGAAAGAACTAGGCTTTGAAAAGAATCTTCCTTTTGTAAGGTATAGGATTGTGGAGTGTTTCTTTTGGATGGTGGGAATGTATTTTGAACCCCGATACTCGGTTGGAAGAATAATCGGAACAAAACTGTGTGTTCTAGCTACAATTTTGGATGATATCTTTGATGCATGTGGTACACTTGAAGAACTCAAGATATTTCGTGAAGCAGTTGACAGGTTTGATGTCAACTATTGCACAAATGGTCTACCACGGTACATGCAAGTATACTATCATTTACTTTTGAATACTATGAATGAAATTGAGGAAGAGCTAGAAAAGCAAGGAATATCGTACCGAGTCCACTACGCAAAACAAGCTTTGAAGAATCAAGCTAGAGACTACCTTATTGAGGCCCAATGGCTCCATGAAGGATGTATCCCTTGCATGGAGGAGTATATGCATGTCAGATTGACTTCTGTTGGTGTTGCTATGACTGTAGTCTTTTCTTTAATTGGAATGGAAGAAACTATTACCGAGGAAACATTTGAGTGGATTTTGAAGTACCCGAAAAGTATTAGGGCTTCGAGCCTTATCTTTAGGCTCATGGATGACATTGCGGGGAGTAAGCATAAGAAAGAAAAAGGGGATGTTGCTTCTAGTATTGAATGTTACATGAAGCAATATGAGGTCTCAGAGAAAGAGACTATCGATGTGTTTAACAAACAAATTATAGATGCATGGAAGGACATAAATGAGGATTTACTTCGACCAACTGTTGTGCCAATGTGTGCGATTAAGCTCGGTCTTAATTTCGCAAGAGGTGTTGATCTGGTTTACAAAGAAGAAGATGAATTCACATATGTTGGAGAAGTAGTTAAACGCTCTGTCGCTGCACTTTTTGTTGATCCATTGCCACTCGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Methyltransf_29 zf-C3HC4_3

Protein Analysis

556

Amino Acids

64.22

Weight (kDa)

5.05

Isoelectric Point (pI)

42.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 42 - 201 2e-51 Terpene synthase, N-terminal domain
Terpene_synth_C PF03936 258 - 498 3.7e-89 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 298 - 498 9e-52 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000529)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04430 AT1G04430 AT1G04430 AT3G23300 AT3G23300 AT4G14360 AT4G14360
fragaria_vesca FvH4_2g21260 FvH4_2g21260 FvH4_2g21260 FvH4_4g03770 FvH4_4g03770 FvH4_4g03770 FvH4_4g03770 FvH4_4g03770 FvH4_4g03770
malus_domestica MD05G1195000.v1.1 MD10G1181600.v1.1 MD10G1182100.v1.1 MD13G1215000.v1.1
prunus_persica Prupe.1G040400_v2.0.a1 Prupe.1G040400_v2.0.a1 Prupe.1G040400_v2.0.a1 Prupe.1G040400_v2.0.a1 Prupe.8G221700_v2.0.a1 Prupe.8G221700_v2.0.a1 Prupe.8G221700_v2.0.a1
pyrus_communis pycom05g18230 pycom10g15760 pycom10g15770 pycom111g01800
rosa_chinensis RchiOBHm_Chr4g0393501 RchiOBHm_Chr4g0393511 RchiOBHm_Chr4g0393631 RchiOBHm_Chr6g0287841
rosa_laevigata RLG00000009742 RLG00000012463
rosa_multiflora Rmu_sc0001531.1_g000028 Rmu_sc0003877.1_g000004 Rmu_sc0007724.1_g000003 Rmu_sc0008931.1_g000001 Rmu_sc0015036.1_g000004 Rmu_sc0021463.1_g000002 Rmu_sc0023299.1_g000001 Rmu_sc0023300.1_g000001 Rmu_sc0036005.1_g000001
rosa_roxburghii Rroxscaffold_5G00338440 Rroxscaffold_5G00338470 Rroxscaffold_5G00338730 Rroxscaffold_5G00338790 Rroxscaffold_7G00180730 Rroxscaffold_7G00180820
rosa_rugosa Rorug03G0372400 Rorug03G0372500 Rorug03G0372600 Rorug04G0000100 Rorug04G0000200 Rorug04G0000300 Rorug04G0000400 Rorug04G0000500 Rorug04G0000600.1 Rorug04G0000700 Rorug04G0000800 Rorug04G0000900 Rorug06G0192300 Rorug06G0192400 Rorug06G0192500
rosa_samantha Rh4AG047800 Rh4AG048100 Rh4BG043700 Rh4BG044600 Rh4CG050500 Rh4CG050600 Rh4CG050700 Rh4CG051400 Rh4DG045000 Rh4DG045300 Rh6AG302000 Rh6BG307900 Rh6CG301600 Rh6CG315800 Rh6DG300500
rosa_wichuraiana Rw4G003770 Rw4G003800 Rw6G026090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 3 cut(s) 358, 1012, 1032
AciI CCGC 2 cut(s) 677, 1364
AclWI GGATC 1 cut(s) 1646
AcsI RAATTY 2 cut(s) 404, 1598
AfaI GTAC 6 cut(s) 171, 640, 943, 1022, 1100, 1310
AfeI AGCGCT 1 cut(s) 690
AfiI CCNNNNNNNGG 7 cut(s) 96, 250, 550, 606, 868, 1156, 1192
AhlI ACTAGT 1 cut(s) 172
AjnI CCWGG 2 cut(s) 79, 641
Alw26I GTCTC 3 cut(s) 1137, 1441, 1442
AlwI GGATC 1 cut(s) 1646
Aor51HI AGCGCT 1 cut(s) 690
AoxI GGCC 2 cut(s) 608, 1158
ApeKI GCWGC 2 cut(s) 581, 1637
ApoI RAATTY 2 cut(s) 404, 1598
AseI ATTAAT 1 cut(s) 224
AspA2I CCTAGG 1 cut(s) 244
AspLEI GCGC 1 cut(s) 691
AspS9I GGNCC 3 cut(s) 17, 328, 1159
AsuHPI GGTGA 2 cut(s) 332, 523
AvaII GGWCC 2 cut(s) 17, 328
AvrII CCTAGG 1 cut(s) 244
BarI GAAGNNNNNNTAC 2 cut(s) 1312, 1344
BbvI GCAGC 2 cut(s) 568, 1624
BccI CCATC 3 cut(s) 89, 311, 832
BciT130I CCWGG 2 cut(s) 81, 643
BciVI GTATCC 1 cut(s) 1193
BcoDI GTCTC 3 cut(s) 1137, 1441, 1442
BcuI ACTAGT 1 cut(s) 172
BfmI CTRYAG 1 cut(s) 1242
BfoI RGCGCY 1 cut(s) 692
BfuI GTATCC 1 cut(s) 1193
BisI GCNGC 2 cut(s) 582, 1638
BlnI CCTAGG 1 cut(s) 244
BlsI GCNGC 2 cut(s) 583, 1639
BmcAI AGTACT 1 cut(s) 171
Bme1390I CCNGG 2 cut(s) 81, 643
Bme18I GGWCC 2 cut(s) 17, 328
BmgT120I GGNCC 3 cut(s) 17, 328, 1159
BmiI GGNNCC 1 cut(s) 1169
BmrFI CCNGG 2 cut(s) 81, 643
BmsI GCATC 3 cut(s) 203, 922, 1471
BoxI GACNNNNGTC 1 cut(s) 1244
BpuEI CTTGAG 2 cut(s) 579, 941
Bsa29I ATCGAT 1 cut(s) 1455
BsaBI GATNNNNATC 2 cut(s) 321, 717
BsaI GGTCTC 1 cut(s) 1441
BsaJI CCNNGG 3 cut(s) 244, 1016, 1281
BsaXI ACNNNNNCTCC 2 cut(s) 1605, 1635
Bsc4I CCNNNNNNNGG 7 cut(s) 96, 250, 550, 606, 868, 1156, 1192
Bse3DI GCAATG 2 cut(s) 1359, 1655
Bse8I GATNNNNATC 2 cut(s) 321, 717
BseBI CCWGG 2 cut(s) 81, 643
BseCI ATCGAT 1 cut(s) 1455
BseDI CCNNGG 3 cut(s) 244, 1016, 1281
BseGI GGATG 6 cut(s) 58, 843, 925, 1184, 1360, 1399
BseJI GATNNNNATC 2 cut(s) 321, 717
BseLI CCNNNNNNNGG 7 cut(s) 96, 250, 550, 606, 868, 1156, 1192
BseMI GCAATG 2 cut(s) 1359, 1655
BseMII CTCAG 1 cut(s) 1452
BseRI GAGGAG 2 cut(s) 758, 1211
BseXI GCAGC 2 cut(s) 568, 1624
BsgI GTGCAG 1 cut(s) 1623
BshFI GGCC 2 cut(s) 610, 1160
BshVI ATCGAT 1 cut(s) 1455
BslI CCNNNNNNNGG 7 cut(s) 96, 250, 550, 606, 868, 1156, 1192
BsmAI GTCTC 3 cut(s) 1137, 1441, 1442
BsnI GGCC 2 cut(s) 610, 1160
Bso31I GGTCTC 1 cut(s) 1441
Bsp143I GATC 4 cut(s) 6, 322, 1573, 1651
BspACI CCGC 2 cut(s) 677, 1364
BspANI GGCC 2 cut(s) 610, 1160
BspCNI CTCAG 1 cut(s) 1451
BspDI ATCGAT 1 cut(s) 1455
BspLI GGNNCC 1 cut(s) 1169
BspPI GGATC 1 cut(s) 1646
BspQI GCTCTTC 1 cut(s) 1068
BspTNI GGTCTC 1 cut(s) 1441
BsrDI GCAATG 2 cut(s) 1359, 1655
BssECI CCNNGG 3 cut(s) 244, 1016, 1281
BssMI GATC 4 cut(s) 6, 322, 1573, 1651
BssNAI GTATAC 1 cut(s) 1033
BssT1I CCWWGG 1 cut(s) 244
Bst1107I GTATAC 1 cut(s) 1033
Bst2UI CCWGG 2 cut(s) 81, 643
Bst4CI ACNGT 7 cut(s) 25, 110, 422, 897, 1020, 1243, 1522
Bst6I CTCTTC 2 cut(s) 351, 1068
BstDEI CTNAG 5 cut(s) 362, 454, 488, 749, 1438
BstDSI CCRYGG 1 cut(s) 1016
BstENI CCTNNNNNAGG 1 cut(s) 1154
BstF5I GGATG 6 cut(s) 58, 843, 925, 1184, 1360, 1399
BstH2I RGCGCY 1 cut(s) 692
BstHHI GCGC 1 cut(s) 691
BstKTI GATC 4 cut(s) 9, 325, 1576, 1654
BstMAI GTCTC 3 cut(s) 1137, 1441, 1442
BstMBI GATC 4 cut(s) 6, 322, 1573, 1651
BstMWI GCNNNNNNNGC 2 cut(s) 1084, 1121
BstNI CCWGG 2 cut(s) 81, 643
BstNSI RCATGY 3 cut(s) 939, 1027, 1211
BstPAI GACNNNNGTC 1 cut(s) 1244
BstSCI CCNGG 2 cut(s) 79, 641
BstSFI CTRYAG 1 cut(s) 1242
BstV1I GCAGC 2 cut(s) 568, 1624
BstXI CCANNNNNNTGG 1 cut(s) 317
BstZ17I GTATAC 1 cut(s) 1033
Bsu15I ATCGAT 1 cut(s) 1455
BsuI GTATCC 1 cut(s) 1193
BsuRI GGCC 2 cut(s) 610, 1160
BsuTUI ATCGAT 1 cut(s) 1455
BtgI CCRYGG 1 cut(s) 1016
BtsCI GGATG 6 cut(s) 58, 843, 925, 1184, 1360, 1399
CfoI GCGC 1 cut(s) 691
Cfr13I GGNCC 3 cut(s) 17, 328, 1159
ClaI ATCGAT 1 cut(s) 1455
Csp6I GTAC 6 cut(s) 170, 639, 942, 1021, 1099, 1309
CspCI CAANNNNNGTGG 2 cut(s) 526, 561
CviQI GTAC 6 cut(s) 170, 639, 942, 1021, 1099, 1309
DdeI CTNAG 5 cut(s) 362, 454, 488, 749, 1438
DpnI GATC 4 cut(s) 8, 324, 1575, 1653
DpnII GATC 4 cut(s) 6, 322, 1573, 1651
DraI TTTAAA 1 cut(s) 409
Eam1104I CTCTTC 2 cut(s) 351, 1068
EarI CTCTTC 2 cut(s) 351, 1068
Eco130I CCWWGG 1 cut(s) 244
Eco147I AGGCCT 1 cut(s) 610
Eco31I GGTCTC 1 cut(s) 1441
Eco32I GATATC 2 cut(s) 451, 925
Eco47I GGWCC 2 cut(s) 17, 328
Eco47III AGCGCT 1 cut(s) 690
EcoNI CCTNNNNNAGG 1 cut(s) 1154
EcoRI GAATTC 1 cut(s) 1598
EcoRII CCWGG 2 cut(s) 79, 641
EcoRV GATATC 2 cut(s) 451, 925
EcoT14I CCWWGG 1 cut(s) 244
EcoT22I ATGCAT 3 cut(s) 937, 1209, 1486
ErhI CCWWGG 1 cut(s) 244
FalI AAGNNNNNCTT 6 cut(s) 422, 454, 507, 539, 732, 764
FauI CCCGC 1 cut(s) 1357
FauNDI CATATG 2 cut(s) 199, 1606
FblI GTMKAC 3 cut(s) 358, 1012, 1032
Fnu4HI GCNGC 2 cut(s) 582, 1638
FokI GGATG 6 cut(s) 45, 850, 932, 1191, 1367, 1406
Fsp4HI GCNGC 2 cut(s) 582, 1638
GlaI GCGC 1 cut(s) 690
GluI GCNGC 2 cut(s) 582, 1638
HaeII RGCGCY 1 cut(s) 692
HaeIII GGCC 2 cut(s) 610, 1160
HhaI GCGC 1 cut(s) 691
Hin6I GCGC 1 cut(s) 689
HinP1I GCGC 1 cut(s) 689
HincII GTYRAC 2 cut(s) 979, 994
HindII GTYRAC 2 cut(s) 979, 994
HindIII AAGCTT 1 cut(s) 1122
HinfI GANTC 4 cut(s) 673, 793, 1104, 1132
HphI GGTGA 2 cut(s) 332, 523
Hpy166II GTNNAC 9 cut(s) 359, 418, 944, 979, 994, 1013, 1033, 1108, 1582
Hpy188I TCNGA 5 cut(s) 21, 391, 887, 1214, 1441
Hpy188III TCNNGA 4 cut(s) 326, 626, 958, 968
Hpy8I GTNNAC 9 cut(s) 359, 418, 944, 979, 994, 1013, 1033, 1108, 1582
HpyAV CCTTC 3 cut(s) 172, 1169, 1483
HpyCH4III ACNGT 7 cut(s) 25, 110, 422, 897, 1020, 1243, 1522
HpyF10VI GCNNNNNNNGC 2 cut(s) 1084, 1121
HpyF3I CTNAG 5 cut(s) 362, 454, 488, 749, 1438
HspAI GCGC 1 cut(s) 689
Kzo9I GATC 4 cut(s) 6, 322, 1573, 1651
LguI GCTCTTC 1 cut(s) 1068
LmnI GCTCC 2 cut(s) 745, 1173
LpnPI CCDG 9 cut(s) 60, 66, 93, 311, 628, 655, 707, 967, 1562
Lsp1109I GCAGC 2 cut(s) 568, 1624
LweI GCATC 3 cut(s) 203, 922, 1471
MaeIII GTNAC 2 cut(s) 422, 1415
MalI GATC 4 cut(s) 8, 324, 1575, 1653
MboI GATC 4 cut(s) 6, 322, 1573, 1651
MlyI GAGTC 2 cut(s) 667, 1113
MmeI TCCRAC 4 cut(s) 44, 262, 853, 1591
Mph1103I ATGCAT 3 cut(s) 937, 1209, 1486
MseI TTAA 9 cut(s) 224, 303, 408, 440, 1256, 1464, 1542, 1554, 1623
MslI CAYNNNNRTG 3 cut(s) 315, 1294, 1666
MspR9I CCNGG 2 cut(s) 81, 643
MvaI CCWGG 2 cut(s) 81, 643
MwoI GCNNNNNNNGC 2 cut(s) 1084, 1121
NdeI CATATG 2 cut(s) 199, 1606
NdeII GATC 4 cut(s) 6, 322, 1573, 1651
NlaIV GGNNCC 1 cut(s) 1169
NsiI ATGCAT 3 cut(s) 937, 1209, 1486
NspI RCATGY 3 cut(s) 939, 1027, 1211
PceI AGGCCT 1 cut(s) 610
PciSI GCTCTTC 1 cut(s) 1068
PfeI GAWTC 2 cut(s) 793, 1132
PkrI GCNGC 2 cut(s) 583, 1639
PleI GAGTC 2 cut(s) 667, 1112
PpsI GAGTC 2 cut(s) 667, 1112
PshAI GACNNNNGTC 1 cut(s) 1244
PshBI ATTAAT 1 cut(s) 224
Psp6I CCWGG 2 cut(s) 79, 641
PspGI CCWGG 2 cut(s) 79, 641
PspN4I GGNNCC 1 cut(s) 1169
PspPI GGNCC 3 cut(s) 17, 328, 1159
PsrI GAACNNNNNNTAC 2 cut(s) 153, 185
RsaI GTAC 6 cut(s) 171, 640, 943, 1022, 1100, 1310
RsaNI GTAC 6 cut(s) 170, 639, 942, 1021, 1099, 1309
RseI CAYNNNNRTG 3 cut(s) 315, 1294, 1666
SapI GCTCTTC 1 cut(s) 1068
SaqAI TTAA 9 cut(s) 224, 303, 408, 440, 1256, 1464, 1542, 1554, 1623
SatI GCNGC 2 cut(s) 582, 1638
Sau3AI GATC 4 cut(s) 6, 322, 1573, 1651
Sau96I GGNCC 3 cut(s) 17, 328, 1159
ScaI AGTACT 1 cut(s) 171
SchI GAGTC 2 cut(s) 667, 1113
ScrFI CCNGG 2 cut(s) 81, 643
SfaNI GCATC 3 cut(s) 203, 922, 1471
SfcI CTRYAG 1 cut(s) 1242
SinI GGWCC 2 cut(s) 17, 328
SmiMI CAYNNNNRTG 3 cut(s) 315, 1294, 1666
SmlI CTYRAG 2 cut(s) 594, 956
SmoI CTYRAG 2 cut(s) 594, 956
SpeI ACTAGT 1 cut(s) 172
SseBI AGGCCT 1 cut(s) 610
SsiI CCGC 2 cut(s) 677, 1364
StuI AGGCCT 1 cut(s) 610
StyD4I CCNGG 2 cut(s) 79, 641
StyI CCWWGG 1 cut(s) 244
TaaI ACNGT 7 cut(s) 25, 110, 422, 897, 1020, 1243, 1522
TaqI TCGA 6 cut(s) 5, 120, 1331, 1455, 1513, 1665
TaqII GACCGA 1 cut(s) 1538
TatI WGTACW 1 cut(s) 169
TfiI GAWTC 2 cut(s) 793, 1132
Tru1I TTAA 9 cut(s) 224, 303, 408, 440, 1256, 1464, 1542, 1554, 1623
Tru9I TTAA 9 cut(s) 224, 303, 408, 440, 1256, 1464, 1542, 1554, 1623
TseI GCWGC 2 cut(s) 581, 1637
VpaK11BI GGWCC 2 cut(s) 17, 328
VspI ATTAAT 1 cut(s) 224
XagI CCTNNNNNAGG 1 cut(s) 1154
XapI RAATTY 2 cut(s) 404, 1598
XbaI TCTAGA 1 cut(s) 625
XceI RCATGY 3 cut(s) 939, 1027, 1211
XmaJI CCTAGG 1 cut(s) 244
XmiI GTMKAC 3 cut(s) 358, 1012, 1032
ZrmI AGTACT 1 cut(s) 171
Zsp2I ATGCAT 3 cut(s) 937, 1209, 1486
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.