Rmu_sc0036005.1_g000001

Putative S-adenosyl-L-methionine-dependent methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0036005.1
OG0000529
Physical Location & Seq
Reverse (-)
295 .. 768
474 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0036005.1_g000001.1.cds

Sequence Viewer

Length: 474 bp
atgctcaactttacaaagaacaatctaaacaatgatggcaggttacgtacagtttttgacgttggctgtggagttgcaagttttggaggctatcttctgtcatctgatattataacagtgtccttagcacccaatgatgttcatcaaaatcaaatccaatttgctttggaaagaggaattccagcatatctcggtgttctagggaccaaaaggcttccttacccaagcagatcttttgaacttgctcactgttcccgttgtagaattgattggctccaaagaggtgggatccttcttcttgagctagagaggttgctcaggccaggaggctactttgcgtactcatctccagaagcatatgcagaggatgaggaagatctcaaaatatggaaagagatgagtgcccttgtggaatgcatgtgttggagaatagctgcaaaaaggaaccaactgtcatttggcagaaaccactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Methyltransf_29 zf-C3HC4_3

Protein Analysis

157

Amino Acids

17.79

Weight (kDa)

7.64

Isoelectric Point (pI)

50.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000529)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04430 AT1G04430 AT1G04430 AT3G23300 AT3G23300 AT4G14360 AT4G14360
fragaria_vesca FvH4_2g21260 FvH4_2g21260 FvH4_2g21260 FvH4_4g03770 FvH4_4g03770 FvH4_4g03770 FvH4_4g03770 FvH4_4g03770 FvH4_4g03770
malus_domestica MD05G1195000.v1.1 MD10G1181600.v1.1 MD10G1182100.v1.1 MD13G1215000.v1.1
prunus_persica Prupe.1G040400_v2.0.a1 Prupe.1G040400_v2.0.a1 Prupe.1G040400_v2.0.a1 Prupe.1G040400_v2.0.a1 Prupe.8G221700_v2.0.a1 Prupe.8G221700_v2.0.a1 Prupe.8G221700_v2.0.a1
pyrus_communis pycom05g18230 pycom10g15760 pycom10g15770 pycom111g01800
rosa_chinensis RchiOBHm_Chr4g0393501 RchiOBHm_Chr4g0393511 RchiOBHm_Chr4g0393631 RchiOBHm_Chr6g0287841
rosa_laevigata RLG00000009742 RLG00000012463
rosa_multiflora Rmu_sc0001531.1_g000028 Rmu_sc0003877.1_g000004 Rmu_sc0007724.1_g000003 Rmu_sc0008931.1_g000001 Rmu_sc0015036.1_g000004 Rmu_sc0021463.1_g000002 Rmu_sc0023299.1_g000001 Rmu_sc0023300.1_g000001 Rmu_sc0036005.1_g000001
rosa_roxburghii Rroxscaffold_5G00338440 Rroxscaffold_5G00338470 Rroxscaffold_5G00338730 Rroxscaffold_5G00338790 Rroxscaffold_7G00180730 Rroxscaffold_7G00180820
rosa_rugosa Rorug03G0372400 Rorug03G0372500 Rorug03G0372600 Rorug04G0000100 Rorug04G0000200 Rorug04G0000300 Rorug04G0000400 Rorug04G0000500 Rorug04G0000600.1 Rorug04G0000700 Rorug04G0000800 Rorug04G0000900 Rorug06G0192300 Rorug06G0192400 Rorug06G0192500
rosa_samantha Rh4AG047800 Rh4AG048100 Rh4BG043700 Rh4BG044600 Rh4CG050500 Rh4CG050600 Rh4CG050700 Rh4CG051400 Rh4DG045000 Rh4DG045300 Rh6AG302000 Rh6BG307900 Rh6CG301600 Rh6CG315800 Rh6DG300500
rosa_wichuraiana Rw4G003770 Rw4G003800 Rw6G026090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 113
Acc36I ACCTGC 1 cut(s) 30
AclWI GGATC 2 cut(s) 283, 296
AcsI RAATTY 1 cut(s) 177
AfaI GTAC 2 cut(s) 49, 341
AgsI TTSAA 1 cut(s) 239
AjnI CCWGG 1 cut(s) 322
AluBI AGCT 2 cut(s) 304, 434
AluI AGCT 2 cut(s) 304, 434
AlwI GGATC 2 cut(s) 283, 296
AoxI GGCC 1 cut(s) 320
ApeKI GCWGC 1 cut(s) 434
ApoI RAATTY 1 cut(s) 177
AspS9I GGNCC 1 cut(s) 204
AvaII GGWCC 1 cut(s) 204
BaeGI GKGCMC 1 cut(s) 406
BamHI GGATCC 1 cut(s) 288
BbvI GCAGC 1 cut(s) 421
BccI CCATC 1 cut(s) 29
BciT130I CCWGG 1 cut(s) 324
BfaI CTAG 2 cut(s) 200, 305
BfuAI ACCTGC 1 cut(s) 30
BglII AGATCT 2 cut(s) 230, 376
BisI GCNGC 1 cut(s) 435
BlsI GCNGC 1 cut(s) 436
Bme1390I CCNGG 1 cut(s) 324
Bme18I GGWCC 1 cut(s) 204
BmgT120I GGNCC 1 cut(s) 204
BmiI GGNNCC 4 cut(s) 205, 275, 290, 446
BmrFI CCNGG 1 cut(s) 324
BpmI CTGGAG 1 cut(s) 333
Bpu10I CCTNAGC 2 cut(s) 124, 317
BpuEI CTTGAG 1 cut(s) 320
BsaAI YACGTR 1 cut(s) 47
BsaBI GATNNNNATC 1 cut(s) 141
Bse8I GATNNNNATC 1 cut(s) 141
BseBI CCWGG 1 cut(s) 324
BseGI GGATG 1 cut(s) 373
BseJI GATNNNNATC 1 cut(s) 141
BseMII CTCAG 1 cut(s) 331
BseSI GKGCMC 1 cut(s) 406
BseXI GCAGC 1 cut(s) 421
BshFI GGCC 1 cut(s) 322
BslFI GGGAC 1 cut(s) 217
BsmFI GGGAC 1 cut(s) 217
BsmI GAATGC 1 cut(s) 419
BsnI GGCC 1 cut(s) 322
Bsp1286I GDGCHC 1 cut(s) 406
Bsp143I GATC 3 cut(s) 230, 288, 376
BspANI GGCC 1 cut(s) 322
BspCNI CTCAG 1 cut(s) 330
BspLI GGNNCC 4 cut(s) 205, 275, 290, 446
BspMI ACCTGC 1 cut(s) 30
BspPI GGATC 2 cut(s) 283, 296
BssMI GATC 3 cut(s) 230, 288, 376
Bst2UI CCWGG 1 cut(s) 324
Bst4CI ACNGT 4 cut(s) 52, 118, 251, 453
BstBAI YACGTR 1 cut(s) 47
BstDEI CTNAG 2 cut(s) 124, 317
BstF5I GGATG 1 cut(s) 373
BstKTI GATC 3 cut(s) 233, 291, 379
BstMBI GATC 3 cut(s) 230, 288, 376
BstNI CCWGG 1 cut(s) 324
BstNSI RCATGY 1 cut(s) 421
BstSCI CCNGG 1 cut(s) 322
BstSLI GKGCMC 1 cut(s) 406
BstSNI TACGTA 1 cut(s) 47
BstV1I GCAGC 1 cut(s) 421
BstX2I RGATCY 3 cut(s) 230, 288, 376
BstXI CCANNNNNNTGG 1 cut(s) 284
BstYI RGATCY 3 cut(s) 230, 288, 376
BsuRI GGCC 1 cut(s) 322
BtsCI GGATG 1 cut(s) 373
BtsIMutI CAGTG 2 cut(s) 123, 247
BveI ACCTGC 1 cut(s) 30
Cfr13I GGNCC 1 cut(s) 204
Csp6I GTAC 2 cut(s) 48, 340
CviAII CATG 1 cut(s) 418
CviJI RGCY 8 cut(s) 66, 90, 214, 274, 304, 322, 330, 434
CviKI_1 RGCY 8 cut(s) 66, 90, 214, 274, 304, 322, 330, 434
CviQI GTAC 2 cut(s) 48, 340
DdeI CTNAG 2 cut(s) 124, 317
DpnI GATC 3 cut(s) 232, 290, 378
DpnII GATC 3 cut(s) 230, 288, 376
Eco105I TACGTA 1 cut(s) 47
Eco47I GGWCC 1 cut(s) 204
EcoRI GAATTC 1 cut(s) 177
EcoRII CCWGG 1 cut(s) 322
EcoT22I ATGCAT 1 cut(s) 419
FaeI CATG 1 cut(s) 421
FaiI YATR 6 cut(s) 113, 187, 358, 360, 388, 419
FalI AAGNNNNNCTT 4 cut(s) 202, 234, 217, 249
FaqI GGGAC 1 cut(s) 217
FatI CATG 1 cut(s) 417
FauNDI CATATG 1 cut(s) 358
Fnu4HI GCNGC 1 cut(s) 435
FokI GGATG 1 cut(s) 380
Fsp4HI GCNGC 1 cut(s) 435
FspBI CTAG 2 cut(s) 200, 305
GluI GCNGC 1 cut(s) 435
GsuI CTGGAG 1 cut(s) 333
HaeIII GGCC 1 cut(s) 322
Hin1II CATG 1 cut(s) 421
Hpy188I TCNGA 1 cut(s) 106
Hpy188III TCNNGA 2 cut(s) 299, 350
HpyAV CCTTC 1 cut(s) 302
HpyCH4III ACNGT 4 cut(s) 52, 118, 251, 453
HpyCH4IV ACGT 2 cut(s) 46, 60
HpyCH4V TGCA 4 cut(s) 77, 362, 417, 437
HpyF3I CTNAG 2 cut(s) 124, 317
HpySE526I ACGT 2 cut(s) 46, 60
Hsp92II CATG 1 cut(s) 421
Kzo9I GATC 3 cut(s) 230, 288, 376
LmnI GCTCC 1 cut(s) 279
LpnPI CCDG 6 cut(s) 25, 195, 304, 309, 336, 363
Lsp1109I GCAGC 1 cut(s) 421
MaeI CTAG 2 cut(s) 200, 305
MaeII ACGT 2 cut(s) 46, 60
MaeIII GTNAC 1 cut(s) 42
MalI GATC 3 cut(s) 232, 290, 378
MboI GATC 3 cut(s) 230, 288, 376
MboII GAAGA 3 cut(s) 86, 287, 386
MflI RGATCY 3 cut(s) 230, 288, 376
MhlI GDGCHC 1 cut(s) 406
MluCI AATT 3 cut(s) 158, 177, 264
MmeI TCCRAC 1 cut(s) 404
MnlI CCTC 7 cut(s) 80, 167, 275, 303, 320, 358, 364
Mph1103I ATGCAT 1 cut(s) 419
MspR9I CCNGG 1 cut(s) 324
Mva1269I GAATGC 1 cut(s) 419
MvaI CCWGG 1 cut(s) 324
NdeI CATATG 1 cut(s) 358
NdeII GATC 3 cut(s) 230, 288, 376
NlaIII CATG 1 cut(s) 421
NlaIV GGNNCC 4 cut(s) 205, 275, 290, 446
NsiI ATGCAT 1 cut(s) 419
NspI RCATGY 1 cut(s) 421
PctI GAATGC 1 cut(s) 419
PkrI GCNGC 1 cut(s) 436
Ppu21I YACGTR 1 cut(s) 47
PsiI TTATAA 1 cut(s) 113
Psp6I CCWGG 1 cut(s) 322
PspGI CCWGG 1 cut(s) 322
PspN4I GGNNCC 4 cut(s) 205, 275, 290, 446
PspPI GGNCC 1 cut(s) 204
PsuI RGATCY 3 cut(s) 230, 288, 376
RsaI GTAC 2 cut(s) 49, 341
RsaNI GTAC 2 cut(s) 48, 340
SatI GCNGC 1 cut(s) 435
Sau3AI GATC 3 cut(s) 230, 288, 376
Sau96I GGNCC 1 cut(s) 204
ScrFI CCNGG 1 cut(s) 324
SduI GDGCHC 1 cut(s) 406
SetI ASST 7 cut(s) 44, 49, 63, 286, 306, 314, 436
SinI GGWCC 1 cut(s) 204
SmlI CTYRAG 1 cut(s) 299
SmoI CTYRAG 1 cut(s) 299
SnaBI TACGTA 1 cut(s) 47
Sse9I AATT 3 cut(s) 158, 177, 264
SspMI CTAG 2 cut(s) 200, 305
StyD4I CCNGG 1 cut(s) 322
TaaI ACNGT 4 cut(s) 52, 118, 251, 453
TaiI ACGT 2 cut(s) 49, 63
TasI AATT 3 cut(s) 158, 177, 264
TscAI CASTG 2 cut(s) 123, 254
TseI GCWGC 1 cut(s) 434
TspDTI ATGAA 1 cut(s) 131
TspRI CASTG 2 cut(s) 123, 254
VpaK11BI GGWCC 1 cut(s) 204
XapI RAATTY 1 cut(s) 177
XceI RCATGY 1 cut(s) 421
XcmI CCANNNNNNNNNTGG 1 cut(s) 455
XspI CTAG 2 cut(s) 200, 305
Zsp2I ATGCAT 1 cut(s) 419
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.