Rorug04G0000200

Putative S-adenosyl-L-methionine-dependent methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000529
Physical Location & Seq
Forward (+)
76263 .. 76701
439 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0000200.1

Sequence Viewer

Length: 339 bp
ATGGTGGTGATTGAGAGCGGCTCCGGCGGAATCGACTCTCTGATGCGCGAATTGGCCAAGGACGGCCACCCGCCGACGTCCAAAGCCTCCATCGCCGCCATGCCGACGGTGACGGTTGTGGAAAGCAACCGCGAGTTCACGGGACTTGCCCGGTTTGCCGGTTCAAGATGCCGGCCGGCCGACGAGGAAGAAGAGCCAGAGAAGAAGAATGAGCCTGGAATTTCTGTCAGCATCTTTATAAGGGCAACAAGTGAAGATTCAGATCGAACTGGTGATTTGCATGATTCGATTCCAAGTGAAGCAGCAGTTGATGATGATGGTGATCATATGCAGAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Methyltransf_29 zf-C3HC4_3

Protein Analysis

112

Amino Acids

11.94

Weight (kDa)

4.46

Isoelectric Point (pI)

50.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000529)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04430 AT1G04430 AT1G04430 AT3G23300 AT3G23300 AT4G14360 AT4G14360
fragaria_vesca FvH4_2g21260 FvH4_2g21260 FvH4_2g21260 FvH4_4g03770 FvH4_4g03770 FvH4_4g03770 FvH4_4g03770 FvH4_4g03770 FvH4_4g03770
malus_domestica MD05G1195000.v1.1 MD10G1181600.v1.1 MD10G1182100.v1.1 MD13G1215000.v1.1
prunus_persica Prupe.1G040400_v2.0.a1 Prupe.1G040400_v2.0.a1 Prupe.1G040400_v2.0.a1 Prupe.1G040400_v2.0.a1 Prupe.8G221700_v2.0.a1 Prupe.8G221700_v2.0.a1 Prupe.8G221700_v2.0.a1
pyrus_communis pycom05g18230 pycom10g15760 pycom10g15770 pycom111g01800
rosa_chinensis RchiOBHm_Chr4g0393501 RchiOBHm_Chr4g0393511 RchiOBHm_Chr4g0393631 RchiOBHm_Chr6g0287841
rosa_laevigata RLG00000009742 RLG00000012463
rosa_multiflora Rmu_sc0001531.1_g000028 Rmu_sc0003877.1_g000004 Rmu_sc0007724.1_g000003 Rmu_sc0008931.1_g000001 Rmu_sc0015036.1_g000004 Rmu_sc0021463.1_g000002 Rmu_sc0023299.1_g000001 Rmu_sc0023300.1_g000001 Rmu_sc0036005.1_g000001
rosa_roxburghii Rroxscaffold_5G00338440 Rroxscaffold_5G00338470 Rroxscaffold_5G00338730 Rroxscaffold_5G00338790 Rroxscaffold_7G00180730 Rroxscaffold_7G00180820
rosa_rugosa Rorug03G0372400 Rorug03G0372500 Rorug03G0372600 Rorug04G0000100 Rorug04G0000200 Rorug04G0000300 Rorug04G0000400 Rorug04G0000500 Rorug04G0000600.1 Rorug04G0000700 Rorug04G0000800 Rorug04G0000900 Rorug06G0192300 Rorug06G0192400 Rorug06G0192500
rosa_samantha Rh4AG047800 Rh4AG048100 Rh4BG043700 Rh4BG044600 Rh4CG050500 Rh4CG050600 Rh4CG050700 Rh4CG051400 Rh4DG045000 Rh4DG045300 Rh6AG302000 Rh6BG307900 Rh6CG301600 Rh6CG315800 Rh6DG300500
rosa_wichuraiana Rw4G003770 Rw4G003800 Rw6G026090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 239
AatII GACGTC 1 cut(s) 80
AccBSI CCGCTC 1 cut(s) 18
AccII CGCG 2 cut(s) 48, 132
AciI CCGC 5 cut(s) 18, 27, 71, 96, 130
AcoI YGGCCR 4 cut(s) 54, 64, 173, 177
AcsI RAATTY 1 cut(s) 219
AcyI GRCGYC 1 cut(s) 77
AgsI TTSAA 1 cut(s) 165
AjnI CCWGG 1 cut(s) 214
AoxI GGCC 4 cut(s) 54, 64, 173, 177
ApeKI GCWGC 1 cut(s) 302
ApoI RAATTY 1 cut(s) 219
AspLEI GCGC 1 cut(s) 48
AsuC2I CCSGG 1 cut(s) 151
AsuHPI GGTGA 4 cut(s) 19, 121, 284, 332
BalI TGGCCA 1 cut(s) 56
BbvI GCAGC 1 cut(s) 314
BccI CCATC 2 cut(s) 98, 311
BceAI ACGGC 1 cut(s) 79
BciT130I CCWGG 1 cut(s) 216
BclI TGATCA 1 cut(s) 322
BcnI CCSGG 1 cut(s) 151
BisI GCNGC 3 cut(s) 19, 96, 303
BlsI GCNGC 3 cut(s) 20, 97, 304
Bme1390I CCNGG 2 cut(s) 151, 216
BmiI GGNNCC 1 cut(s) 22
BmrFI CCNGG 2 cut(s) 151, 216
BmsI GCATC 3 cut(s) 33, 158, 240
BplI GAGNNNNNCTC 1 cut(s) 37
BpuMI CCSGG 1 cut(s) 151
BsaBI GATNNNNATC 2 cut(s) 261, 321
BsaHI GRCGYC 1 cut(s) 77
BsaJI CCNNGG 1 cut(s) 57
Bse118I RCCGGY 3 cut(s) 158, 171, 175
Bse1I ACTGG 1 cut(s) 274
Bse8I GATNNNNATC 2 cut(s) 261, 321
BseBI CCWGG 1 cut(s) 216
BseDI CCNNGG 1 cut(s) 57
BseJI GATNNNNATC 2 cut(s) 261, 321
BseNI ACTGG 1 cut(s) 274
BseX3I CGGCCG 2 cut(s) 173, 177
BseXI GCAGC 1 cut(s) 314
Bsh1236I CGCG 2 cut(s) 48, 132
Bsh1285I CGRYCG 2 cut(s) 176, 180
BshFI GGCC 4 cut(s) 56, 66, 175, 179
BsiEI CGRYCG 2 cut(s) 176, 180
BsiSI CCGG 5 cut(s) 24, 151, 159, 172, 176
BslFI GGGAC 1 cut(s) 156
BsmFI GGGAC 1 cut(s) 156
BsnI GGCC 4 cut(s) 56, 66, 175, 179
Bsp143I GATC 2 cut(s) 262, 322
BspACI CCGC 5 cut(s) 18, 27, 71, 96, 130
BspANI GGCC 4 cut(s) 56, 66, 175, 179
BspFNI CGCG 2 cut(s) 48, 132
BspLI GGNNCC 1 cut(s) 22
BspQI GCTCTTC 1 cut(s) 186
BsrBI CCGCTC 1 cut(s) 18
BsrFI RCCGGY 3 cut(s) 158, 171, 175
BsrI ACTGG 1 cut(s) 274
BssAI RCCGGY 3 cut(s) 158, 171, 175
BssECI CCNNGG 1 cut(s) 57
BssMI GATC 2 cut(s) 262, 322
BssNI GRCGYC 1 cut(s) 77
BssT1I CCWWGG 1 cut(s) 57
Bst2UI CCWGG 1 cut(s) 216
Bst4CI ACNGT 2 cut(s) 109, 115
Bst6I CTCTTC 1 cut(s) 186
BstACI GRCGYC 1 cut(s) 77
BstC8I GCNNGC 2 cut(s) 173, 177
BstFNI CGCG 2 cut(s) 48, 132
BstHHI GCGC 1 cut(s) 48
BstKTI GATC 2 cut(s) 265, 325
BstMBI GATC 2 cut(s) 262, 322
BstMCI CGRYCG 2 cut(s) 176, 180
BstMWI GCNNNNNNNGC 3 cut(s) 24, 92, 155
BstNI CCWGG 1 cut(s) 216
BstSCI CCNGG 2 cut(s) 149, 214
BstUI CGCG 2 cut(s) 48, 132
BstV1I GCAGC 1 cut(s) 314
BstZI CGGCCG 2 cut(s) 173, 177
BsuRI GGCC 4 cut(s) 56, 66, 175, 179
BtgZI GCGATG 1 cut(s) 76
Cac8I GCNNGC 2 cut(s) 173, 177
CfoI GCGC 1 cut(s) 48
Cfr10I RCCGGY 3 cut(s) 158, 171, 175
CviAII CATG 2 cut(s) 100, 281
CviJI RGCY 8 cut(s) 21, 56, 66, 86, 175, 179, 196, 214
CviKI_1 RGCY 8 cut(s) 21, 56, 66, 86, 175, 179, 196, 214
DpnI GATC 2 cut(s) 264, 324
DpnII GATC 2 cut(s) 262, 322
EaeI YGGCCR 4 cut(s) 54, 64, 173, 177
EagI CGGCCG 2 cut(s) 173, 177
Eam1104I CTCTTC 1 cut(s) 186
EarI CTCTTC 1 cut(s) 186
EciI GGCGGA 1 cut(s) 42
EclXI CGGCCG 2 cut(s) 173, 177
Eco130I CCWWGG 1 cut(s) 57
Eco52I CGGCCG 2 cut(s) 173, 177
EcoRII CCWGG 1 cut(s) 214
EcoT14I CCWWGG 1 cut(s) 57
ErhI CCWWGG 1 cut(s) 57
FaeI CATG 2 cut(s) 103, 284
FaiI YATR 5 cut(s) 101, 239, 282, 327, 329
FaqI GGGAC 1 cut(s) 156
FatI CATG 2 cut(s) 99, 280
FauI CCCGC 1 cut(s) 78
FauNDI CATATG 1 cut(s) 327
FbaI TGATCA 1 cut(s) 322
Fnu4HI GCNGC 3 cut(s) 19, 96, 303
FseI GGCCGGCC 1 cut(s) 179
Fsp4HI GCNGC 3 cut(s) 19, 96, 303
GlaI GCGC 1 cut(s) 47
GluI GCNGC 3 cut(s) 19, 96, 303
HaeIII GGCC 4 cut(s) 56, 66, 175, 179
HapII CCGG 5 cut(s) 24, 151, 159, 172, 176
HhaI GCGC 1 cut(s) 48
Hin1I GRCGYC 1 cut(s) 77
Hin1II CATG 2 cut(s) 103, 284
Hin6I GCGC 1 cut(s) 46
HinP1I GCGC 1 cut(s) 46
HinfI GANTC 5 cut(s) 30, 35, 257, 284, 289
HpaII CCGG 5 cut(s) 24, 151, 159, 172, 176
HphI GGTGA 4 cut(s) 19, 121, 284, 332
Hpy166II GTNNAC 1 cut(s) 138
Hpy188I TCNGA 2 cut(s) 42, 262
Hpy188III TCNNGA 1 cut(s) 165
Hpy8I GTNNAC 1 cut(s) 138
Hpy99I CGWCG 3 cut(s) 79, 109, 185
HpyCH4III ACNGT 2 cut(s) 109, 115
HpyCH4IV ACGT 1 cut(s) 77
HpyCH4V TGCA 2 cut(s) 280, 331
HpyF10VI GCNNNNNNNGC 3 cut(s) 24, 92, 155
HpySE526I ACGT 1 cut(s) 77
Hsp92I GRCGYC 1 cut(s) 77
Hsp92II CATG 2 cut(s) 103, 284
HspAI GCGC 1 cut(s) 46
KroI GCCGGC 2 cut(s) 171, 175
KroNI GCCGGC 2 cut(s) 173, 177
Ksp22I TGATCA 1 cut(s) 322
Kzo9I GATC 2 cut(s) 262, 322
LguI GCTCTTC 1 cut(s) 186
LmnI GCTCC 1 cut(s) 26
LpnPI CCDG 9 cut(s) 37, 164, 172, 185, 189, 201, 210, 228, 255
Lsp1109I GCAGC 1 cut(s) 314
LweI GCATC 3 cut(s) 33, 158, 240
MaeII ACGT 1 cut(s) 77
MaeIII GTNAC 1 cut(s) 109
MalI GATC 2 cut(s) 264, 324
MbiI CCGCTC 1 cut(s) 18
MboI GATC 2 cut(s) 262, 322
MboII GAAGA 5 cut(s) 200, 203, 214, 217, 266
MlsI TGGCCA 1 cut(s) 56
MluCI AATT 2 cut(s) 50, 219
MluNI TGGCCA 1 cut(s) 56
MlyI GAGTC 1 cut(s) 29
MnlI CCTC 2 cut(s) 97, 178
Mox20I TGGCCA 1 cut(s) 56
MroNI GCCGGC 2 cut(s) 171, 175
MscI TGGCCA 1 cut(s) 56
Msp20I TGGCCA 1 cut(s) 56
MspI CCGG 5 cut(s) 24, 151, 159, 172, 176
MspR9I CCNGG 2 cut(s) 151, 216
MvaI CCWGG 1 cut(s) 216
MvnI CGCG 2 cut(s) 48, 132
MwoI GCNNNNNNNGC 3 cut(s) 24, 92, 155
NaeI GCCGGC 2 cut(s) 173, 177
NciI CCSGG 1 cut(s) 151
NdeI CATATG 1 cut(s) 327
NdeII GATC 2 cut(s) 262, 322
NgoMIV GCCGGC 2 cut(s) 171, 175
NlaIII CATG 2 cut(s) 103, 284
NlaIV GGNNCC 1 cut(s) 22
NmuCI GTSAC 1 cut(s) 109
PciSI GCTCTTC 1 cut(s) 186
PdiI GCCGGC 2 cut(s) 173, 177
PfeI GAWTC 4 cut(s) 30, 257, 284, 289
PkrI GCNGC 3 cut(s) 20, 97, 304
PleI GAGTC 1 cut(s) 29
PpsI GAGTC 1 cut(s) 29
PsiI TTATAA 1 cut(s) 239
Psp6I CCWGG 1 cut(s) 214
PspGI CCWGG 1 cut(s) 214
PspN4I GGNNCC 1 cut(s) 22
RigI GGCCGGCC 1 cut(s) 179
SapI GCTCTTC 1 cut(s) 186
SatI GCNGC 3 cut(s) 19, 96, 303
Sau3AI GATC 2 cut(s) 262, 322
SchI GAGTC 1 cut(s) 29
ScrFI CCNGG 2 cut(s) 151, 216
SetI ASST 1 cut(s) 80
SfaNI GCATC 3 cut(s) 33, 158, 240
Sse9I AATT 2 cut(s) 50, 219
SsiI CCGC 5 cut(s) 18, 27, 71, 96, 130
StyD4I CCNGG 2 cut(s) 149, 214
StyI CCWWGG 1 cut(s) 57
TaaI ACNGT 2 cut(s) 109, 115
TaiI ACGT 1 cut(s) 80
TaqI TCGA 3 cut(s) 33, 265, 287
TasI AATT 2 cut(s) 50, 219
TauI GCSGC 2 cut(s) 21, 98
TfiI GAWTC 4 cut(s) 30, 257, 284, 289
TseFI GTSAC 1 cut(s) 109
TseI GCWGC 1 cut(s) 302
Tsp45I GTSAC 1 cut(s) 109
XapI RAATTY 1 cut(s) 219
ZraI GACGTC 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.