Rmu_sc0021463.1_g000002

Putative S-adenosyl-L-methionine-dependent methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0021463.1
OG0000529
Physical Location & Seq
Reverse (-)
2445 .. 3606
1162 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0021463.1_g000002.1.cds

Sequence Viewer

Length: 489 bp
atgttctgctttccagatgaccatagagaaaaggggagtggattggctccctggccagctagattgacaactcctcctcgacttgctggttttggctattcaaatgaaatgtttgaaaaggatatggaactttggcggcatcgagttgagaattattggaatctcttgagtccaaagattgaatcaaacactctgaggaatgtgatggatatgaaagcacacatgggatcatttgcagctgctctgaaggacaaggatgtttgggtgatgaatgtcgtccctgaagatggaccaaacacactaaagctgatatacgatagaggcctcataggcagtattcacagctggtgtgaagcctattcaacataccccgtacttacgatttactccatgcttggactgtcttctctgacttggaaaagaaagcactgcattctgaggatctgttacttgagatggatcgcatactcaggccaactggatttataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Methyltransf_29 zf-C3HC4_3

Protein Analysis

162

Amino Acids

18.81

Weight (kDa)

8.33

Isoelectric Point (pI)

35.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000529)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04430 AT1G04430 AT1G04430 AT3G23300 AT3G23300 AT4G14360 AT4G14360
fragaria_vesca FvH4_2g21260 FvH4_2g21260 FvH4_2g21260 FvH4_4g03770 FvH4_4g03770 FvH4_4g03770 FvH4_4g03770 FvH4_4g03770 FvH4_4g03770
malus_domestica MD05G1195000.v1.1 MD10G1181600.v1.1 MD10G1182100.v1.1 MD13G1215000.v1.1
prunus_persica Prupe.1G040400_v2.0.a1 Prupe.1G040400_v2.0.a1 Prupe.1G040400_v2.0.a1 Prupe.1G040400_v2.0.a1 Prupe.8G221700_v2.0.a1 Prupe.8G221700_v2.0.a1 Prupe.8G221700_v2.0.a1
pyrus_communis pycom05g18230 pycom10g15760 pycom10g15770 pycom111g01800
rosa_chinensis RchiOBHm_Chr4g0393501 RchiOBHm_Chr4g0393511 RchiOBHm_Chr4g0393631 RchiOBHm_Chr6g0287841
rosa_laevigata RLG00000009742 RLG00000012463
rosa_multiflora Rmu_sc0001531.1_g000028 Rmu_sc0003877.1_g000004 Rmu_sc0007724.1_g000003 Rmu_sc0008931.1_g000001 Rmu_sc0015036.1_g000004 Rmu_sc0021463.1_g000002 Rmu_sc0023299.1_g000001 Rmu_sc0023300.1_g000001 Rmu_sc0036005.1_g000001
rosa_roxburghii Rroxscaffold_5G00338440 Rroxscaffold_5G00338470 Rroxscaffold_5G00338730 Rroxscaffold_5G00338790 Rroxscaffold_7G00180730 Rroxscaffold_7G00180820
rosa_rugosa Rorug03G0372400 Rorug03G0372500 Rorug03G0372600 Rorug04G0000100 Rorug04G0000200 Rorug04G0000300 Rorug04G0000400 Rorug04G0000500 Rorug04G0000600.1 Rorug04G0000700 Rorug04G0000800 Rorug04G0000900 Rorug06G0192300 Rorug06G0192400 Rorug06G0192500
rosa_samantha Rh4AG047800 Rh4AG048100 Rh4BG043700 Rh4BG044600 Rh4CG050500 Rh4CG050600 Rh4CG050700 Rh4CG051400 Rh4DG045000 Rh4DG045300 Rh6AG302000 Rh6BG307900 Rh6CG301600 Rh6CG315800 Rh6DG300500
rosa_wichuraiana Rw4G003770 Rw4G003800 Rw6G026090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 487
AciI CCGC 1 cut(s) 136
AclWI GGATC 3 cut(s) 235, 449, 467
AcoI YGGCCR 1 cut(s) 53
AcuI CTGAAG 2 cut(s) 266, 303
AfaI GTAC 1 cut(s) 375
AfiI CCNNNNNNNGG 1 cut(s) 287
AgsI TTSAA 4 cut(s) 102, 116, 182, 363
AjnI CCWGG 1 cut(s) 50
AluBI AGCT 4 cut(s) 59, 239, 307, 345
AluI AGCT 4 cut(s) 59, 239, 307, 345
AlwI GGATC 3 cut(s) 235, 449, 467
AoxI GGCC 3 cut(s) 53, 322, 472
ApeKI GCWGC 2 cut(s) 236, 239
AspS9I GGNCC 1 cut(s) 290
AsuHPI GGTGA 1 cut(s) 277
AvaII GGWCC 1 cut(s) 290
BalI TGGCCA 1 cut(s) 55
BbsI GAAGAC 1 cut(s) 396
BbvI GCAGC 2 cut(s) 226, 248
BccI CCATC 3 cut(s) 199, 281, 450
BciT130I CCWGG 1 cut(s) 52
BfaI CTAG 1 cut(s) 60
BglI GCCNNNNNGGC 1 cut(s) 330
BisI GCNGC 3 cut(s) 137, 237, 240
BlsI GCNGC 3 cut(s) 138, 238, 241
Bme1390I CCNGG 1 cut(s) 52
Bme18I GGWCC 1 cut(s) 290
BmgT120I GGNCC 1 cut(s) 290
BmiI GGNNCC 1 cut(s) 48
BmrFI CCNGG 1 cut(s) 52
BmsI GCATC 1 cut(s) 148
BpiI GAAGAC 1 cut(s) 396
BpuEI CTTGAG 2 cut(s) 187, 472
BsaJI CCNNGG 1 cut(s) 50
BsaXI ACNNNNNCTCC 2 cut(s) 58, 88
Bsc4I CCNNNNNNNGG 1 cut(s) 287
Bse1I ACTGG 1 cut(s) 483
BseBI CCWGG 1 cut(s) 52
BseDI CCNNGG 1 cut(s) 50
BseGI GGATG 1 cut(s) 262
BseLI CCNNNNNNNGG 1 cut(s) 287
BseMII CTCAG 3 cut(s) 185, 428, 483
BseNI ACTGG 1 cut(s) 483
BseRI GAGGAG 2 cut(s) 63, 66
BseXI GCAGC 2 cut(s) 226, 248
BshFI GGCC 3 cut(s) 55, 324, 474
BslFI GGGAC 1 cut(s) 263
BslI CCNNNNNNNGG 1 cut(s) 287
BsmFI GGGAC 1 cut(s) 263
BsmI GAATGC 1 cut(s) 432
BsnI GGCC 3 cut(s) 55, 324, 474
Bsp143I GATC 3 cut(s) 227, 441, 459
BspACI CCGC 1 cut(s) 136
BspANI GGCC 3 cut(s) 55, 324, 474
BspCNI CTCAG 3 cut(s) 186, 429, 482
BspLI GGNNCC 1 cut(s) 48
BspPI GGATC 3 cut(s) 235, 449, 467
BsrI ACTGG 1 cut(s) 483
BssECI CCNNGG 1 cut(s) 50
BssMI GATC 3 cut(s) 227, 441, 459
Bst2UI CCWGG 1 cut(s) 52
Bst4CI ACNGT 1 cut(s) 402
BstC8I GCNNGC 1 cut(s) 57
BstDEI CTNAG 3 cut(s) 194, 437, 469
BstF5I GGATG 1 cut(s) 262
BstKTI GATC 3 cut(s) 230, 444, 462
BstMBI GATC 3 cut(s) 227, 441, 459
BstMWI GCNNNNNNNGC 1 cut(s) 330
BstNI CCWGG 1 cut(s) 52
BstSCI CCNGG 1 cut(s) 50
BstV1I GCAGC 2 cut(s) 226, 248
BstV2I GAAGAC 1 cut(s) 396
BstX2I RGATCY 1 cut(s) 441
BstYI RGATCY 1 cut(s) 441
BsuRI GGCC 3 cut(s) 55, 324, 474
BtsCI GGATG 1 cut(s) 262
BtsI GCAGTG 1 cut(s) 427
BtsIMutI CAGTG 1 cut(s) 427
Cac8I GCNNGC 1 cut(s) 57
Cfr13I GGNCC 1 cut(s) 290
Csp6I GTAC 1 cut(s) 374
CviAII CATG 2 cut(s) 223, 391
CviQI GTAC 1 cut(s) 374
DdeI CTNAG 3 cut(s) 194, 437, 469
DpnI GATC 3 cut(s) 229, 443, 461
DpnII GATC 3 cut(s) 227, 441, 459
EaeI YGGCCR 1 cut(s) 53
Eco147I AGGCCT 1 cut(s) 324
Eco47I GGWCC 1 cut(s) 290
Eco57I CTGAAG 2 cut(s) 266, 303
EcoRII CCWGG 1 cut(s) 50
FaeI CATG 2 cut(s) 226, 394
FaqI GGGAC 1 cut(s) 263
FatI CATG 2 cut(s) 222, 390
Fnu4HI GCNGC 3 cut(s) 137, 237, 240
FokI GGATG 1 cut(s) 269
Fsp4HI GCNGC 3 cut(s) 137, 237, 240
FspBI CTAG 1 cut(s) 60
GluI GCNGC 3 cut(s) 137, 237, 240
HaeIII GGCC 3 cut(s) 55, 324, 474
Hin1II CATG 2 cut(s) 226, 394
HinfI GANTC 3 cut(s) 160, 169, 182
HphI GGTGA 1 cut(s) 277
Hpy188I TCNGA 4 cut(s) 195, 246, 411, 438
Hpy188III TCNNGA 2 cut(s) 14, 166
HpyAV CCTTC 1 cut(s) 241
HpyCH4III ACNGT 1 cut(s) 402
HpyCH4V TGCA 2 cut(s) 236, 432
HpyF10VI GCNNNNNNNGC 1 cut(s) 330
HpyF3I CTNAG 3 cut(s) 194, 437, 469
Hsp92II CATG 2 cut(s) 226, 394
Kzo9I GATC 3 cut(s) 227, 441, 459
LmnI GCTCC 1 cut(s) 52
LpnPI CCDG 9 cut(s) 27, 37, 64, 69, 72, 294, 331, 456, 464
Lsp1109I GCAGC 2 cut(s) 226, 248
LweI GCATC 1 cut(s) 148
MaeI CTAG 1 cut(s) 60
MaeIII GTNAC 1 cut(s) 446
MalI GATC 3 cut(s) 229, 443, 461
MboI GATC 3 cut(s) 227, 441, 459
MboII GAAGA 2 cut(s) 296, 396
MflI RGATCY 1 cut(s) 441
MlsI TGGCCA 1 cut(s) 55
MluCI AATT 1 cut(s) 151
MluNI TGGCCA 1 cut(s) 55
MlyI GAGTC 1 cut(s) 178
MnlI CCTC 6 cut(s) 84, 87, 189, 314, 335, 432
Mox20I TGGCCA 1 cut(s) 55
MscI TGGCCA 1 cut(s) 55
Msp20I TGGCCA 1 cut(s) 55
MspA1I CMGCKG 2 cut(s) 239, 345
MspR9I CCNGG 1 cut(s) 52
Mva1269I GAATGC 1 cut(s) 432
MvaI CCWGG 1 cut(s) 52
MwoI GCNNNNNNNGC 1 cut(s) 330
NdeII GATC 3 cut(s) 227, 441, 459
NlaIII CATG 2 cut(s) 226, 394
NlaIV GGNNCC 1 cut(s) 48
PceI AGGCCT 1 cut(s) 324
PctI GAATGC 1 cut(s) 432
PfeI GAWTC 2 cut(s) 160, 182
PkrI GCNGC 3 cut(s) 138, 238, 241
PleI GAGTC 1 cut(s) 177
PpsI GAGTC 1 cut(s) 177
PsiI TTATAA 1 cut(s) 487
Psp6I CCWGG 1 cut(s) 50
PspGI CCWGG 1 cut(s) 50
PspN4I GGNNCC 1 cut(s) 48
PspPI GGNCC 1 cut(s) 290
PsuI RGATCY 1 cut(s) 441
PvuII CAGCTG 2 cut(s) 239, 345
RsaI GTAC 1 cut(s) 375
RsaNI GTAC 1 cut(s) 374
SatI GCNGC 3 cut(s) 137, 237, 240
Sau3AI GATC 3 cut(s) 227, 441, 459
Sau96I GGNCC 1 cut(s) 290
SchI GAGTC 1 cut(s) 178
ScrFI CCNGG 1 cut(s) 52
SetI ASST 4 cut(s) 61, 241, 309, 347
SfaNI GCATC 1 cut(s) 148
SinI GGWCC 1 cut(s) 290
SmlI CTYRAG 2 cut(s) 166, 451
SmoI CTYRAG 2 cut(s) 166, 451
Sse9I AATT 1 cut(s) 151
SseBI AGGCCT 1 cut(s) 324
SsiI CCGC 1 cut(s) 136
SspMI CTAG 1 cut(s) 60
StuI AGGCCT 1 cut(s) 324
StyD4I CCNGG 1 cut(s) 50
TaaI ACNGT 1 cut(s) 402
TaqI TCGA 2 cut(s) 79, 142
TasI AATT 1 cut(s) 151
TauI GCSGC 1 cut(s) 139
TfiI GAWTC 2 cut(s) 160, 182
TscAI CASTG 1 cut(s) 434
TseI GCWGC 2 cut(s) 236, 239
TspDTI ATGAA 3 cut(s) 120, 227, 284
TspRI CASTG 1 cut(s) 434
VpaK11BI GGWCC 1 cut(s) 290
XspI CTAG 1 cut(s) 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.