Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0000529

Physical Location & Seq

Genomic Coordinates Forward (+)

30999622 .. 31001293

Gene Structure 1672 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0192500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGAATTCGTTGGACTCGCACATAGAGACCGTCCTGTGGACCCCAGACCAAATCACCTCCCGAGTCTCCGAGCTCGCCGCCGAGATCTCCGCCGACCTCTCTCACCTCTCCGAACCTCCCGTCCTCGTCGGAGTAGCCACCGGCGCTTTTCTCTTCCTCGCCGACTTGGCCCGCCACATCCGCCTCCCCGTCGCCGTCGATTTCATCCGCGCCGAATCCTACGGCTCCGGCACCGAGTCCAATGGCGCCCCCAAGATTTCTTCCGACTTGAAGCTCGACGTCGCCGGCCGGCACGTTGTCCTGGTTGAGGACATTGTGGATAGCGGGAGCACTCTGTCGTGTCTGATTGCGCACTTGGAAGCGAAAGGGGCTTCGTCTGTGTCAGTGTCTACTTTTCTTGATAAACCATCGAGAAGAAAAGTTCACTTTAAGCTTCTAGGCAAGGGAAAGTTCTACAGAGGTTTCGAGTGTCCAGATTATTTTGTTGTGGGTTACGGAATGGACTTTGCTGAACTGTACAGGAACTTGCCTTATGTTGGTGTTCTGAAGCCGGAGCATTACAAGTGCCAGTCACCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005774 GO:0005794 GO:0005802 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0012505 GO:0016020 GO:0016740 GO:0016741 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0032259 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098588 GO:0098791 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_29

Protein Analysis

192

Amino Acids

20.94

Weight (kDa)

5.95

Isoelectric Point (pI)

39.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pribosyltran	PF00156	17 - 169	1.2e-26	Phosphoribosyl transferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000529)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04430 AT1G04430 AT1G04430 AT3G23300 AT3G23300 AT4G14360 AT4G14360
fragaria_vesca	FvH4_2g21260 FvH4_2g21260 FvH4_2g21260 FvH4_4g03770 FvH4_4g03770 FvH4_4g03770 FvH4_4g03770 FvH4_4g03770 FvH4_4g03770
malus_domestica	MD05G1195000.v1.1 MD10G1181600.v1.1 MD10G1182100.v1.1 MD13G1215000.v1.1
prunus_persica	Prupe.1G040400_v2.0.a1 Prupe.1G040400_v2.0.a1 Prupe.1G040400_v2.0.a1 Prupe.1G040400_v2.0.a1 Prupe.8G221700_v2.0.a1 Prupe.8G221700_v2.0.a1 Prupe.8G221700_v2.0.a1
pyrus_communis	pycom05g18230 pycom10g15760 pycom10g15770 pycom111g01800
rosa_chinensis	RchiOBHm_Chr4g0393501 RchiOBHm_Chr4g0393511 RchiOBHm_Chr4g0393631 RchiOBHm_Chr6g0287841
rosa_laevigata	RLG00000009742 RLG00000012463
rosa_multiflora	Rmu_sc0001531.1_g000028 Rmu_sc0003877.1_g000004 Rmu_sc0007724.1_g000003 Rmu_sc0008931.1_g000001 Rmu_sc0015036.1_g000004 Rmu_sc0021463.1_g000002 Rmu_sc0023299.1_g000001 Rmu_sc0023300.1_g000001 Rmu_sc0036005.1_g000001
rosa_roxburghii	Rroxscaffold_5G00338440 Rroxscaffold_5G00338470 Rroxscaffold_5G00338730 Rroxscaffold_5G00338790 Rroxscaffold_7G00180730 Rroxscaffold_7G00180820
rosa_rugosa	Rorug03G0372400 Rorug03G0372500 Rorug03G0372600 Rorug04G0000100 Rorug04G0000200 Rorug04G0000300 Rorug04G0000400 Rorug04G0000500 Rorug04G0000600.1 Rorug04G0000700 Rorug04G0000800 Rorug04G0000900 Rorug06G0192300 Rorug06G0192400 Rorug06G0192500
rosa_samantha	Rh4AG047800 Rh4AG048100 Rh4BG043700 Rh4BG044600 Rh4CG050500 Rh4CG050600 Rh4CG050700 Rh4CG051400 Rh4DG045000 Rh4DG045300 Rh6AG302000 Rh6BG307900 Rh6CG301600 Rh6CG315800 Rh6DG300500
rosa_wichuraiana	Rw4G003770 Rw4G003800 Rw6G026090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	282
Acc16I	TGCGCA	1 cut(s)	351
AccB1I	GGYRCC	2 cut(s)	230, 245
AccI	GTMKAC	1 cut(s)	389
AccII	CGCG	1 cut(s)	210
AciI	CCGC	6 cut(s)	78, 90, 172, 181, 208, 324
AcoI	YGGCCR	1 cut(s)	286
AcsI	RAATTY	1 cut(s)	4
AcuI	CTGAAG	1 cut(s)	566
AcyI	GRCGYC	2 cut(s)	246, 279
AfaI	GTAC	1 cut(s)	518
AfiI	CCNNNNNNNGG	3 cut(s)	36, 307, 536
AgsI	TTSAA	1 cut(s)	271
AjnI	CCWGG	1 cut(s)	300
AloI	GAACNNNNNNTCC	2 cut(s)	105, 137
AluBI	AGCT	3 cut(s)	73, 274, 433
AluI	AGCT	3 cut(s)	73, 274, 433
Alw21I	GWGCWC	2 cut(s)	75, 332
Alw26I	GTCTC	2 cut(s)	20, 70
Ama87I	CYCGRG	1 cut(s)	60
AoxI	GGCC	2 cut(s)	168, 286
ApoI	RAATTY	1 cut(s)	4
ArsI	GACNNNNNNTTYG	2 cut(s)	105, 137
AspLEI	GCGC	4 cut(s)	146, 212, 248, 352
AspS9I	GGNCC	2 cut(s)	39, 169
AsuHPI	GGTGA	3 cut(s)	46, 95, 564
AvaI	CYCGRG	1 cut(s)	60
AvaII	GGWCC	1 cut(s)	39
BanI	GGYRCC	2 cut(s)	230, 245
BanII	GRGCYC	1 cut(s)	75
Bbv12I	GWGCWC	2 cut(s)	75, 332
BccI	CCATC	1 cut(s)	415
BceAI	ACGGC	2 cut(s)	179, 238
BciT130I	CCWGG	1 cut(s)	302
BcoDI	GTCTC	2 cut(s)	20, 70
BfaI	CTAG	1 cut(s)	437
BfmI	CTRYAG	1 cut(s)	454
BfoI	RGCGCY	2 cut(s)	147, 249
BglI	GCCNNNNNGGC	1 cut(s)	167
BglII	AGATCT	1 cut(s)	84
BisI	GCNGC	1 cut(s)	78
BlsI	GCNGC	1 cut(s)	79
Bme1390I	CCNGG	1 cut(s)	302
Bme18I	GGWCC	1 cut(s)	39
BmeT110I	CYCGRG	1 cut(s)	60
BmgT120I	GGNCC	2 cut(s)	39, 169
BmiI	GGNNCC	4 cut(s)	41, 226, 232, 247
BmrFI	CCNGG	1 cut(s)	302
BsaHI	GRCGYC	2 cut(s)	246, 279
BsaI	GGTCTC	1 cut(s)	20
Bsc4I	CCNNNNNNNGG	3 cut(s)	36, 307, 536
Bse118I	RCCGGY	3 cut(s)	140, 284, 288
Bse1I	ACTGG	1 cut(s)	568
BseBI	CCWGG	1 cut(s)	302
BseGI	GGATG	2 cut(s)	177, 204
BseLI	CCNNNNNNNGG	3 cut(s)	36, 307, 536
BseNI	ACTGG	1 cut(s)	568
BseX3I	CGGCCG	1 cut(s)	286
Bsh1236I	CGCG	1 cut(s)	210
Bsh1285I	CGRYCG	1 cut(s)	289
BshFI	GGCC	2 cut(s)	170, 288
BshNI	GGYRCC	2 cut(s)	230, 245
BsiEI	CGRYCG	1 cut(s)	289
BsiHKAI	GWGCWC	2 cut(s)	75, 332
BsiHKCI	CYCGRG	1 cut(s)	60
BsiSI	CCGG	5 cut(s)	141, 228, 285, 289, 551
BslI	CCNNNNNNNGG	3 cut(s)	36, 307, 536
BsmAI	GTCTC	2 cut(s)	20, 70
BsnI	GGCC	2 cut(s)	170, 288
Bso31I	GGTCTC	1 cut(s)	20
BsoBI	CYCGRG	1 cut(s)	60
Bsp1286I	GDGCHC	2 cut(s)	75, 332
Bsp1407I	TGTACA	1 cut(s)	516
Bsp143I	GATC	1 cut(s)	84
BspACI	CCGC	6 cut(s)	78, 90, 172, 181, 208, 324
BspANI	GGCC	2 cut(s)	170, 288
BspFNI	CGCG	1 cut(s)	210
BspLI	GGNNCC	4 cut(s)	41, 226, 232, 247
BspT107I	GGYRCC	2 cut(s)	230, 245
BspTNI	GGTCTC	1 cut(s)	20
BsrFI	RCCGGY	3 cut(s)	140, 284, 288
BsrGI	TGTACA	1 cut(s)	516
BsrI	ACTGG	1 cut(s)	568
BssAI	RCCGGY	3 cut(s)	140, 284, 288
BssMI	GATC	1 cut(s)	84
BssNI	GRCGYC	2 cut(s)	246, 279
Bst2UI	CCWGG	1 cut(s)	302
Bst4CI	ACNGT	2 cut(s)	31, 516
Bst6I	CTCTTC	1 cut(s)	158
BstACI	GRCGYC	2 cut(s)	246, 279
BstAUI	TGTACA	1 cut(s)	516
BstC8I	GCNNGC	4 cut(s)	75, 172, 286, 290
BstENI	CCTNNNNNAGG	1 cut(s)	305
BstF5I	GGATG	2 cut(s)	177, 204
BstFNI	CGCG	1 cut(s)	210
BstH2I	RGCGCY	2 cut(s)	147, 249
BstHHI	GCGC	4 cut(s)	146, 212, 248, 352
BstKTI	GATC	1 cut(s)	87
BstMAI	GTCTC	2 cut(s)	20, 70
BstMBI	GATC	1 cut(s)	84
BstMCI	CGRYCG	1 cut(s)	289
BstMWI	GCNNNNNNNGC	4 cut(s)	143, 167, 180, 368
BstNI	CCWGG	1 cut(s)	302
BstSCI	CCNGG	1 cut(s)	300
BstSFI	CTRYAG	1 cut(s)	454
BstUI	CGCG	1 cut(s)	210
BstX2I	RGATCY	1 cut(s)	84
BstYI	RGATCY	1 cut(s)	84
BstZI	CGGCCG	1 cut(s)	286
BsuRI	GGCC	2 cut(s)	170, 288
BtsCI	GGATG	2 cut(s)	177, 204
BtsIMutI	CAGTG	1 cut(s)	390
Cac8I	GCNNGC	4 cut(s)	75, 172, 286, 290
CfoI	GCGC	4 cut(s)	146, 212, 248, 352
Cfr10I	RCCGGY	3 cut(s)	140, 284, 288
Cfr13I	GGNCC	2 cut(s)	39, 169
Csp6I	GTAC	1 cut(s)	517
CviJI	RGCY	9 cut(s)	73, 137, 170, 225, 274, 288, 371, 433, 550
CviKI_1	RGCY	9 cut(s)	73, 137, 170, 225, 274, 288, 371, 433, 550
CviQI	GTAC	1 cut(s)	517
DinI	GGCGCC	1 cut(s)	247
DpnI	GATC	1 cut(s)	86
DpnII	GATC	1 cut(s)	84
EaeI	YGGCCR	1 cut(s)	286
EagI	CGGCCG	1 cut(s)	286
Eam1104I	CTCTTC	1 cut(s)	158
EarI	CTCTTC	1 cut(s)	158
EciI	GGCGGA	2 cut(s)	79, 170
Ecl136II	GAGCTC	1 cut(s)	73
EclXI	CGGCCG	1 cut(s)	286
Eco24I	GRGCYC	1 cut(s)	75
Eco31I	GGTCTC	1 cut(s)	20
Eco47I	GGWCC	1 cut(s)	39
Eco52I	CGGCCG	1 cut(s)	286
Eco53kI	GAGCTC	1 cut(s)	73
Eco57I	CTGAAG	1 cut(s)	566
Eco88I	CYCGRG	1 cut(s)	60
EcoICRI	GAGCTC	1 cut(s)	73
EcoNI	CCTNNNNNAGG	1 cut(s)	305
EcoRI	GAATTC	1 cut(s)	4
EcoRII	CCWGG	1 cut(s)	300
EcoT38I	GRGCYC	1 cut(s)	75
EgeI	GGCGCC	1 cut(s)	247
EheI	GGCGCC	1 cut(s)	247
FaiI	YATR	2 cut(s)	23, 534
FauI	CCCGC	2 cut(s)	179, 317
FblI	GTMKAC	1 cut(s)	389
Fnu4HI	GCNGC	1 cut(s)	78
FokI	GGATG	2 cut(s)	164, 191
FriOI	GRGCYC	1 cut(s)	75
Fsp4HI	GCNGC	1 cut(s)	78
FspBI	CTAG	1 cut(s)	437
FspI	TGCGCA	1 cut(s)	351
GlaI	GCGC	4 cut(s)	145, 211, 247, 351
GluI	GCNGC	1 cut(s)	78
HaeII	RGCGCY	2 cut(s)	147, 249
HaeIII	GGCC	2 cut(s)	170, 288
HapII	CCGG	5 cut(s)	141, 228, 285, 289, 551
HhaI	GCGC	4 cut(s)	146, 212, 248, 352
Hin1I	GRCGYC	2 cut(s)	246, 279
Hin6I	GCGC	4 cut(s)	144, 210, 246, 350
HinP1I	GCGC	4 cut(s)	144, 210, 246, 350
HindIII	AAGCTT	1 cut(s)	431
HinfI	GANTC	4 cut(s)	14, 63, 215, 236
HpaII	CCGG	5 cut(s)	141, 228, 285, 289, 551
HphI	GGTGA	3 cut(s)	46, 95, 564
Hpy166II	GTNNAC	3 cut(s)	39, 390, 424
Hpy188I	TCNGA	6 cut(s)	70, 112, 131, 265, 345, 546
Hpy188III	TCNNGA	4 cut(s)	60, 398, 411, 473
Hpy8I	GTNNAC	3 cut(s)	39, 390, 424
Hpy99I	CGWCG	5 cut(s)	131, 194, 200, 281, 284
HpyCH4III	ACNGT	2 cut(s)	31, 516
HpyCH4IV	ACGT	2 cut(s)	279, 294
HpyF10VI	GCNNNNNNNGC	4 cut(s)	143, 167, 180, 368
HpySE526I	ACGT	2 cut(s)	279, 294
Hsp92I	GRCGYC	2 cut(s)	246, 279
HspAI	GCGC	4 cut(s)	144, 210, 246, 350
KasI	GGCGCC	1 cut(s)	245
KroI	GCCGGC	2 cut(s)	284, 288
KroNI	GCCGGC	2 cut(s)	286, 290
Kzo9I	GATC	1 cut(s)	84
LmnI	GCTCC	3 cut(s)	230, 327, 553
MaeI	CTAG	1 cut(s)	437
MaeII	ACGT	2 cut(s)	279, 294
MaeIII	GTNAC	2 cut(s)	491, 570
MalI	GATC	1 cut(s)	86
MboI	GATC	1 cut(s)	84
MboII	GAAGA	3 cut(s)	145, 252, 426
MflI	RGATCY	1 cut(s)	84
MhlI	GDGCHC	2 cut(s)	75, 332
MluCI	AATT	1 cut(s)	4
Mly113I	GGCGCC	1 cut(s)	246
MlyI	GAGTC	3 cut(s)	8, 72, 245
MmeI	TCCRAC	2 cut(s)	109, 288
MnlI	CCTC	9 cut(s)	67, 107, 116, 126, 134, 167, 194, 301, 452
MroNI	GCCGGC	2 cut(s)	284, 288
MseI	TTAA	1 cut(s)	429
MspI	CCGG	5 cut(s)	141, 228, 285, 289, 551
MspR9I	CCNGG	1 cut(s)	302
MvaI	CCWGG	1 cut(s)	302
MvnI	CGCG	1 cut(s)	210
MwoI	GCNNNNNNNGC	4 cut(s)	143, 167, 180, 368
NaeI	GCCGGC	2 cut(s)	286, 290
NarI	GGCGCC	1 cut(s)	246
NdeII	GATC	1 cut(s)	84
NgoMIV	GCCGGC	2 cut(s)	284, 288
NlaIV	GGNNCC	4 cut(s)	41, 226, 232, 247
NmeAIII	GCCGAG	1 cut(s)	106
NmuCI	GTSAC	1 cut(s)	570
NsbI	TGCGCA	1 cut(s)	351
PdiI	GCCGGC	2 cut(s)	286, 290
PfeI	GAWTC	1 cut(s)	215
PkrI	GCNGC	1 cut(s)	79
PleI	GAGTC	3 cut(s)	8, 71, 244
PluTI	GGCGCC	1 cut(s)	249
PpsI	GAGTC	3 cut(s)	8, 71, 244
Psp124BI	GAGCTC	1 cut(s)	75
Psp6I	CCWGG	1 cut(s)	300
PspGI	CCWGG	1 cut(s)	300
PspN4I	GGNNCC	4 cut(s)	41, 226, 232, 247
PspPI	GGNCC	2 cut(s)	39, 169
PsuI	RGATCY	1 cut(s)	84
RsaI	GTAC	1 cut(s)	518
RsaNI	GTAC	1 cut(s)	517
SacI	GAGCTC	1 cut(s)	75
SaqAI	TTAA	1 cut(s)	429
SatI	GCNGC	1 cut(s)	78
Sau3AI	GATC	1 cut(s)	84
Sau96I	GGNCC	2 cut(s)	39, 169
SchI	GAGTC	3 cut(s)	8, 72, 245
ScrFI	CCNGG	1 cut(s)	302
SduI	GDGCHC	2 cut(s)	75, 332
SfcI	CTRYAG	1 cut(s)	454
SfoI	GGCGCC	1 cut(s)	247
SgrAI	CRCCGGYG	1 cut(s)	140
SinI	GGWCC	1 cut(s)	39
Sse9I	AATT	1 cut(s)	4
SsiI	CCGC	6 cut(s)	78, 90, 172, 181, 208, 324
SspDI	GGCGCC	1 cut(s)	245
SspMI	CTAG	1 cut(s)	437
SstI	GAGCTC	1 cut(s)	75
StyD4I	CCNGG	1 cut(s)	300
TaaI	ACNGT	2 cut(s)	31, 516
TaiI	ACGT	2 cut(s)	282, 297
TaqI	TCGA	4 cut(s)	198, 276, 410, 465
TasI	AATT	1 cut(s)	4
TatI	WGTACW	1 cut(s)	516
TauI	GCSGC	1 cut(s)	80
TfiI	GAWTC	1 cut(s)	215
Tru1I	TTAA	1 cut(s)	429
Tru9I	TTAA	1 cut(s)	429
TscAI	CASTG	1 cut(s)	390
TseFI	GTSAC	1 cut(s)	570
Tsp45I	GTSAC	1 cut(s)	570
TspDTI	ATGAA	2 cut(s)	17, 193
TspGWI	ACGGA	1 cut(s)	510
TspRI	CASTG	1 cut(s)	390
VpaK11BI	GGWCC	1 cut(s)	39
XagI	CCTNNNNNAGG	1 cut(s)	305
XapI	RAATTY	1 cut(s)	4
XmiI	GTMKAC	1 cut(s)	389
XspI	CTAG	1 cut(s)	437
ZraI	GACGTC	1 cut(s)	280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.