Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0000529

Physical Location & Seq

Genomic Coordinates Reverse (-)

30961119 .. 30961569

Gene Structure 451 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0192400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGTCCACCATCTTCTATGCCGTTCAGTGCTGCCAATGCTCCACCATGCAGGTGAAGCAGAGGAAGCAGAGCAGTAAGAACAACAAGTGGACTTGTGTGGTCTGCAATCAGAAGCAGTCTGCACGCAAGGTGTTCGCTGAAAGCCCCATGGCCAGAGACCTCCGCCCCTTGGTCCAATCCTCCAACATGTCCCGCCAATTCACCGACGAAAAACAACACCACGATCTTGCCCTTGTTTCTGATGTTCATGAGTGCAATACCCAAAAGAGAAGACGAACTGATTGGACCGAGTACCTGGATGCTGAGGCCGATCAGCGCACCGAGATGAAGCACGAAGATGATGAAAGAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005774 GO:0005794 GO:0005802 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0012505 GO:0016020 GO:0016740 GO:0016741 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0032259 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098588 GO:0098791 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_29

Protein Analysis

117

Amino Acids

13.85

Weight (kDa)

8.56

Isoelectric Point (pI)

69.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MRNIP	PF15749	8 - 105	7.3e-18	MRN-interacting protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000529)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04430 AT1G04430 AT1G04430 AT3G23300 AT3G23300 AT4G14360 AT4G14360
fragaria_vesca	FvH4_2g21260 FvH4_2g21260 FvH4_2g21260 FvH4_4g03770 FvH4_4g03770 FvH4_4g03770 FvH4_4g03770 FvH4_4g03770 FvH4_4g03770
malus_domestica	MD05G1195000.v1.1 MD10G1181600.v1.1 MD10G1182100.v1.1 MD13G1215000.v1.1
prunus_persica	Prupe.1G040400_v2.0.a1 Prupe.1G040400_v2.0.a1 Prupe.1G040400_v2.0.a1 Prupe.1G040400_v2.0.a1 Prupe.8G221700_v2.0.a1 Prupe.8G221700_v2.0.a1 Prupe.8G221700_v2.0.a1
pyrus_communis	pycom05g18230 pycom10g15760 pycom10g15770 pycom111g01800
rosa_chinensis	RchiOBHm_Chr4g0393501 RchiOBHm_Chr4g0393511 RchiOBHm_Chr4g0393631 RchiOBHm_Chr6g0287841
rosa_laevigata	RLG00000009742 RLG00000012463
rosa_multiflora	Rmu_sc0001531.1_g000028 Rmu_sc0003877.1_g000004 Rmu_sc0007724.1_g000003 Rmu_sc0008931.1_g000001 Rmu_sc0015036.1_g000004 Rmu_sc0021463.1_g000002 Rmu_sc0023299.1_g000001 Rmu_sc0023300.1_g000001 Rmu_sc0036005.1_g000001
rosa_roxburghii	Rroxscaffold_5G00338440 Rroxscaffold_5G00338470 Rroxscaffold_5G00338730 Rroxscaffold_5G00338790 Rroxscaffold_7G00180730 Rroxscaffold_7G00180820
rosa_rugosa	Rorug03G0372400 Rorug03G0372500 Rorug03G0372600 Rorug04G0000100 Rorug04G0000200 Rorug04G0000300 Rorug04G0000400 Rorug04G0000500 Rorug04G0000600.1 Rorug04G0000700 Rorug04G0000800 Rorug04G0000900 Rorug06G0192300 Rorug06G0192400 Rorug06G0192500
rosa_samantha	Rh4AG047800 Rh4AG048100 Rh4BG043700 Rh4BG044600 Rh4CG050500 Rh4CG050600 Rh4CG050700 Rh4CG051400 Rh4DG045000 Rh4DG045300 Rh6AG302000 Rh6BG307900 Rh6CG301600 Rh6CG315800 Rh6DG300500
rosa_wichuraiana	Rw4G003770 Rw4G003800 Rw6G026090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	40
Acc36I	ACCTGC	1 cut(s)	40
AciI	CCGC	2 cut(s)	163, 193
AcoI	YGGCCR	1 cut(s)	150
AfaI	GTAC	1 cut(s)	293
AfiI	CCNNNNNNNGG	1 cut(s)	169
AflIII	ACRYGT	1 cut(s)	186
AjnI	CCWGG	1 cut(s)	294
Alw26I	GTCTC	1 cut(s)	150
AoxI	GGCC	2 cut(s)	150, 306
ApeKI	GCWGC	1 cut(s)	30
AspLEI	GCGC	1 cut(s)	318
AspS9I	GGNCC	2 cut(s)	172, 285
AsuHPI	GGTGA	2 cut(s)	64, 193
AvaII	GGWCC	2 cut(s)	172, 285
BalI	TGGCCA	1 cut(s)	152
BbsI	GAAGAC	1 cut(s)	277
BbvCI	CCTCAGC	1 cut(s)	303
BbvI	GCAGC	1 cut(s)	17
BccI	CCATC	1 cut(s)	17
BceAI	ACGGC	1 cut(s)	5
BcgI	CGANNNNNNTGC	2 cut(s)	115, 149
BciT130I	CCWGG	1 cut(s)	296
BcoDI	GTCTC	1 cut(s)	150
BfuAI	ACCTGC	1 cut(s)	40
BisI	GCNGC	1 cut(s)	31
BlsI	GCNGC	1 cut(s)	32
Bme1390I	CCNGG	1 cut(s)	296
Bme18I	GGWCC	2 cut(s)	172, 285
BmgT120I	GGNCC	2 cut(s)	172, 285
BmrFI	CCNGG	1 cut(s)	296
BmsI	GCATC	1 cut(s)	289
BpiI	GAAGAC	1 cut(s)	277
Bpu10I	CCTNAGC	1 cut(s)	303
BsaI	GGTCTC	1 cut(s)	150
BsaJI	CCNNGG	2 cut(s)	147, 168
Bsc4I	CCNNNNNNNGG	1 cut(s)	169
BseBI	CCWGG	1 cut(s)	296
BseDI	CCNNGG	2 cut(s)	147, 168
BseGI	GGATG	1 cut(s)	304
BseLI	CCNNNNNNNGG	1 cut(s)	169
BseMII	CTCAG	1 cut(s)	294
BseXI	GCAGC	1 cut(s)	17
BsgI	GTGCAG	1 cut(s)	105
BshFI	GGCC	2 cut(s)	152, 308
BslFI	GGGAC	1 cut(s)	175
BslI	CCNNNNNNNGG	1 cut(s)	169
BsmAI	GTCTC	1 cut(s)	150
BsmFI	GGGAC	1 cut(s)	175
BsnI	GGCC	2 cut(s)	152, 308
Bso31I	GGTCTC	1 cut(s)	150
Bsp143I	GATC	2 cut(s)	223, 310
Bsp19I	CCATGG	1 cut(s)	147
BspACI	CCGC	2 cut(s)	163, 193
BspANI	GGCC	2 cut(s)	152, 308
BspCNI	CTCAG	1 cut(s)	295
BspHI	TCATGA	1 cut(s)	247
BspMI	ACCTGC	1 cut(s)	40
BspTNI	GGTCTC	1 cut(s)	150
BssECI	CCNNGG	2 cut(s)	147, 168
BssMI	GATC	2 cut(s)	223, 310
BssT1I	CCWWGG	2 cut(s)	147, 168
Bst2UI	CCWGG	1 cut(s)	296
BstC8I	GCNNGC	1 cut(s)	124
BstDEI	CTNAG	1 cut(s)	303
BstDSI	CCRYGG	1 cut(s)	147
BstF5I	GGATG	1 cut(s)	304
BstHHI	GCGC	1 cut(s)	318
BstKTI	GATC	2 cut(s)	226, 313
BstMAI	GTCTC	1 cut(s)	150
BstMBI	GATC	2 cut(s)	223, 310
BstMWI	GCNNNNNNNGC	3 cut(s)	36, 55, 64
BstNI	CCWGG	1 cut(s)	296
BstNSI	RCATGY	1 cut(s)	190
BstSCI	CCNGG	1 cut(s)	294
BstV1I	GCAGC	1 cut(s)	17
BstV2I	GAAGAC	1 cut(s)	277
BsuRI	GGCC	2 cut(s)	152, 308
BtgI	CCRYGG	1 cut(s)	147
BtsCI	GGATG	1 cut(s)	304
BtsIMutI	CAGTG	1 cut(s)	32
BveI	ACCTGC	1 cut(s)	40
Cac8I	GCNNGC	1 cut(s)	124
CciI	TCATGA	1 cut(s)	247
CfoI	GCGC	1 cut(s)	318
Cfr13I	GGNCC	2 cut(s)	172, 285
Csp6I	GTAC	1 cut(s)	292
CviAII	CATG	4 cut(s)	46, 148, 187, 248
CviJI	RGCY	3 cut(s)	144, 152, 308
CviKI_1	RGCY	3 cut(s)	144, 152, 308
CviQI	GTAC	1 cut(s)	292
DdeI	CTNAG	1 cut(s)	303
DpnI	GATC	2 cut(s)	225, 312
DpnII	GATC	2 cut(s)	223, 310
EaeI	YGGCCR	1 cut(s)	150
EciI	GGCGGA	1 cut(s)	152
Eco130I	CCWWGG	2 cut(s)	147, 168
Eco31I	GGTCTC	1 cut(s)	150
Eco47I	GGWCC	2 cut(s)	172, 285
EcoRII	CCWGG	1 cut(s)	294
EcoT14I	CCWWGG	2 cut(s)	147, 168
ErhI	CCWWGG	2 cut(s)	147, 168
FaeI	CATG	4 cut(s)	49, 151, 190, 251
FaiI	YATR	5 cut(s)	18, 47, 149, 188, 249
FaqI	GGGAC	1 cut(s)	175
FatI	CATG	4 cut(s)	45, 147, 186, 247
FauI	CCCGC	1 cut(s)	200
Fnu4HI	GCNGC	1 cut(s)	31
FokI	GGATG	1 cut(s)	311
Fsp4HI	GCNGC	1 cut(s)	31
GlaI	GCGC	1 cut(s)	317
GluI	GCNGC	1 cut(s)	31
HaeIII	GGCC	2 cut(s)	152, 308
HhaI	GCGC	1 cut(s)	318
Hin1II	CATG	4 cut(s)	49, 151, 190, 251
Hin6I	GCGC	1 cut(s)	316
HinP1I	GCGC	1 cut(s)	316
HphI	GGTGA	2 cut(s)	64, 193
Hpy166II	GTNNAC	2 cut(s)	6, 90
Hpy188I	TCNGA	2 cut(s)	111, 241
Hpy188III	TCNNGA	1 cut(s)	248
Hpy8I	GTNNAC	2 cut(s)	6, 90
Hpy99I	CGWCG	1 cut(s)	209
HpyCH4V	TGCA	4 cut(s)	49, 105, 122, 255
HpyF10VI	GCNNNNNNNGC	3 cut(s)	36, 55, 64
HpyF3I	CTNAG	1 cut(s)	303
Hsp92II	CATG	4 cut(s)	49, 151, 190, 251
HspAI	GCGC	1 cut(s)	316
Kzo9I	GATC	2 cut(s)	223, 310
LmnI	GCTCC	1 cut(s)	44
LpnPI	CCDG	4 cut(s)	35, 166, 281, 308
Lsp1109I	GCAGC	1 cut(s)	17
LweI	GCATC	1 cut(s)	289
MalI	GATC	2 cut(s)	225, 312
MboI	GATC	2 cut(s)	223, 310
MboII	GAAGA	3 cut(s)	4, 282, 347
MlsI	TGGCCA	1 cut(s)	152
MluCI	AATT	1 cut(s)	197
MluNI	TGGCCA	1 cut(s)	152
MmeI	TCCRAC	1 cut(s)	207
MnlI	CCTC	4 cut(s)	54, 170, 190, 298
Mox20I	TGGCCA	1 cut(s)	152
MscI	TGGCCA	1 cut(s)	152
MslI	CAYNNNNRTG	3 cut(s)	50, 323, 336
Msp20I	TGGCCA	1 cut(s)	152
MspR9I	CCNGG	1 cut(s)	296
MvaI	CCWGG	1 cut(s)	296
MwoI	GCNNNNNNNGC	3 cut(s)	36, 55, 64
NcoI	CCATGG	1 cut(s)	147
NdeII	GATC	2 cut(s)	223, 310
NlaIII	CATG	4 cut(s)	49, 151, 190, 251
NspI	RCATGY	1 cut(s)	190
PagI	TCATGA	1 cut(s)	247
PaqCI	CACCTGC	1 cut(s)	40
PciI	ACATGT	1 cut(s)	186
PkrI	GCNGC	1 cut(s)	32
PscI	ACATGT	1 cut(s)	186
Psp6I	CCWGG	1 cut(s)	294
PspGI	CCWGG	1 cut(s)	294
PspPI	GGNCC	2 cut(s)	172, 285
RsaI	GTAC	1 cut(s)	293
RsaNI	GTAC	1 cut(s)	292
RseI	CAYNNNNRTG	3 cut(s)	50, 323, 336
SatI	GCNGC	1 cut(s)	31
Sau3AI	GATC	2 cut(s)	223, 310
Sau96I	GGNCC	2 cut(s)	172, 285
ScrFI	CCNGG	1 cut(s)	296
SetI	ASST	4 cut(s)	54, 132, 162, 297
SfaNI	GCATC	1 cut(s)	289
SinI	GGWCC	2 cut(s)	172, 285
SmiMI	CAYNNNNRTG	3 cut(s)	50, 323, 336
Sse9I	AATT	1 cut(s)	197
SsiI	CCGC	2 cut(s)	163, 193
StyD4I	CCNGG	1 cut(s)	294
StyI	CCWWGG	2 cut(s)	147, 168
TaqII	GACCGA	1 cut(s)	302
TasI	AATT	1 cut(s)	197
TscAI	CASTG	1 cut(s)	32
TseI	GCWGC	1 cut(s)	30
TspDTI	ATGAA	2 cut(s)	236, 341
TspRI	CASTG	1 cut(s)	32
VpaK11BI	GGWCC	2 cut(s)	172, 285
XceI	RCATGY	1 cut(s)	190

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.