Rorug04G0000100

Putative S-adenosyl-L-methionine-dependent methyltransferase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Reverse (-)
50398 .. 52902
2505 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0000100.1

Sequence Viewer

Length: 1539 bp
ATGCGGACAAAGCCCTCATTCTTGGAAAAGCATCGTGAGCAACAAGAGAGGCGCAGCAAGAATAAGTATCCTCATAGAATGTCCCGTAAAGGATATGCAGGGTTGGAGGCTGAGTTGGTTGATGGAATGAGTGACGAAGAAGTTGATAGGGCCACTTTGTGGATAAGAGGACGACAGACAAAGGATGGCAGTTTCAAGGATGAGGAGTCAAAAAAGACTGCTGAAAAGATAACAAACTTGAGAAAGGTTGAGAGTGGAGAACTAAGCGCTGAAGGAAGTAATGATGTCTTAACATTGGCGTTGGGCACTCCAGAGCATGGGGGAAGAGTGCGGGGAGTAGGAGGTTTTGTCACTCCCTCTACTTACTTCCACCTCCCTAAACGTAAAAAGGAGAGCATAGAAGCTATTGTCAGACTTAGTGTGCAAAAAATATTGTTAGAGGAGAAAGAGAAGATAGTAGAGGAGGCAAAGGAGAAGATACTAGAGGAGGCAAGGGAGGAGATAATCAAGGAAGCGAGGGAAAAAATTGTTGCAGATGAGCGGGCTATGTGGGAGGCCAAGTTTGCTGAACTTGAAGCAAAGATAAATGGAAAAGAGGCTACAACTATTCACCTAGATGTATCTGGCCATGGAAGTTGCTCAATGACAGCTGATGAGATTGCTCAAGAAACGGATAAAGCTCCGTTGGAAGAAGTAGTGAACAATGTGGATGGAACTAAAATTCTGAGCGTTTTTGAAGCAATGGAAAACAAAACCCTCATGCGTAAAAGGAAAGGGACAAAGGTTGTTAAGGAAGGCAGGTTGGATAAAAGTCCCAGCTGCAAGAAAGGTAATGAGTTTCCCAAGTTGCTTGAGAAAGTAGTTGTCAACCGTGAGGAGGTCAATAAGGCTGTTGAAGAAAATGTCAATATGATAGATATCAAGGAGCCAGAGAATGAGGAGGGGGTAGAATATGTGGATTTGATGATGCGTCAACCTACATTAAAGTCAAAGGTAGCTGAGGTTGATTGCAAGTTGGCAATAGGTTCTGTTGAACATATTGTTGCTTATGCCACTATTATGGAGTGCGAGGATCCTTCCCAACTCGTTCATGGCACTCCAGTAAGGGATGGTAATGTGCCCGTTTCCATCTATGTCGCGCTTGAGGAGAAAGCAAAAGTGCCATTTCCTGTGAAAGATGAAATTGAAATAGTGAAGCAGGCTATGGGGAGTTGGGTCGCATGGCCTAAACACCTAGTCATAAAATCTCCAGTCAAGAAACCTACCAAGGATAATGCTGATAAGAAGAAGAAAAGGAAAGAGATAGGGGAAGAGGACTCGGAGATTGAATTTGGCTTGGCCAAATTGGCACCATCGTTGCCAGCTTCATTGAAGATGTTATGTTTGTGGGGTGAGGATCCATTCAAAGATGGGAATACAATCAGCTTCTACATGGAGCCTGAAGTGTTTGGATATTCTCGCAAGACATTTATATTGGGAAAAGTTAGGCGACTTGCAAGCATGAGGGAAGTAACTGGAACTTGCATTGCAGTGTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

512

Amino Acids

57.68

Weight (kDa)

6.42

Isoelectric Point (pI)

44.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 10 - 119 1.4e-13 Plant transposase (Ptta/En/Spm family)
DUF8039 PF26133 335 - 414 2.8e-12 Domain of unknown function (DUF8039)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000529)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04430 AT1G04430 AT1G04430 AT3G23300 AT3G23300 AT4G14360 AT4G14360
fragaria_vesca FvH4_2g21260 FvH4_2g21260 FvH4_2g21260 FvH4_4g03770 FvH4_4g03770 FvH4_4g03770 FvH4_4g03770 FvH4_4g03770 FvH4_4g03770
malus_domestica MD05G1195000.v1.1 MD10G1181600.v1.1 MD10G1182100.v1.1 MD13G1215000.v1.1
prunus_persica Prupe.1G040400_v2.0.a1 Prupe.1G040400_v2.0.a1 Prupe.1G040400_v2.0.a1 Prupe.1G040400_v2.0.a1 Prupe.8G221700_v2.0.a1 Prupe.8G221700_v2.0.a1 Prupe.8G221700_v2.0.a1
pyrus_communis pycom05g18230 pycom10g15760 pycom10g15770 pycom111g01800
rosa_chinensis RchiOBHm_Chr4g0393501 RchiOBHm_Chr4g0393511 RchiOBHm_Chr4g0393631 RchiOBHm_Chr6g0287841
rosa_laevigata RLG00000009742 RLG00000012463
rosa_multiflora Rmu_sc0001531.1_g000028 Rmu_sc0003877.1_g000004 Rmu_sc0007724.1_g000003 Rmu_sc0008931.1_g000001 Rmu_sc0015036.1_g000004 Rmu_sc0021463.1_g000002 Rmu_sc0023299.1_g000001 Rmu_sc0023300.1_g000001 Rmu_sc0036005.1_g000001
rosa_roxburghii Rroxscaffold_5G00338440 Rroxscaffold_5G00338470 Rroxscaffold_5G00338730 Rroxscaffold_5G00338790 Rroxscaffold_7G00180730 Rroxscaffold_7G00180820
rosa_rugosa Rorug03G0372400 Rorug03G0372500 Rorug03G0372600 Rorug04G0000100 Rorug04G0000200 Rorug04G0000300 Rorug04G0000400 Rorug04G0000500 Rorug04G0000600.1 Rorug04G0000700 Rorug04G0000800 Rorug04G0000900 Rorug06G0192300 Rorug06G0192400 Rorug06G0192500
rosa_samantha Rh4AG047800 Rh4AG048100 Rh4BG043700 Rh4BG044600 Rh4CG050500 Rh4CG050600 Rh4CG050700 Rh4CG051400 Rh4DG045000 Rh4DG045300 Rh6AG302000 Rh6BG307900 Rh6CG301600 Rh6CG315800 Rh6DG300500
rosa_wichuraiana Rw4G003770 Rw4G003800 Rw6G026090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 789
AccB1I GGYRCC 1 cut(s) 1348
AccB7I CCANNNNNTGG 2 cut(s) 159, 317
AccBSI CCGCTC 1 cut(s) 541
AccII CGCG 1 cut(s) 1139
AciI CCGC 3 cut(s) 4, 331, 541
AclWI GGATC 4 cut(s) 1067, 1080, 1391, 1404
AcoI YGGCCR 2 cut(s) 625, 1338
AcsI RAATTY 2 cut(s) 720, 1328
AcuI CTGAAG 2 cut(s) 291, 1461
AdeI CACNNNGTG 1 cut(s) 159
AfaI GTAC 1 cut(s) 1535
AfeI AGCGCT 1 cut(s) 268
AfiI CCNNNNNNNGG 3 cut(s) 159, 317, 877
AgsI TTSAA 9 cut(s) 196, 575, 737, 896, 1034, 1187, 1328, 1372, 1405
AluBI AGCT 7 cut(s) 404, 650, 680, 819, 998, 1364, 1425
AluI AGCT 7 cut(s) 404, 650, 680, 819, 998, 1364, 1425
AlwI GGATC 4 cut(s) 1067, 1080, 1391, 1404
Aor51HI AGCGCT 1 cut(s) 268
AoxI GGCC 5 cut(s) 150, 555, 625, 1223, 1338
ApeKI GCWGC 2 cut(s) 54, 819
ApoI RAATTY 2 cut(s) 720, 1328
AspLEI GCGC 3 cut(s) 54, 269, 1141
AspS9I GGNCC 1 cut(s) 150
AsuHPI GGTGA 2 cut(s) 602, 1403
BaeGI GKGCMC 2 cut(s) 308, 1122
BalI TGGCCA 2 cut(s) 627, 1340
BamHI GGATCC 2 cut(s) 1072, 1396
BanI GGYRCC 1 cut(s) 1348
BbvCI CCTCAGC 1 cut(s) 999
BbvI GCAGC 2 cut(s) 66, 806
BccI CCATC 7 cut(s) 116, 179, 704, 1103, 1136, 1360, 1403
BciVI GTATCC 1 cut(s) 78
BfaI CTAG 4 cut(s) 482, 614, 1235, 1537
BfoI RGCGCY 1 cut(s) 270
BfuAI ACCTGC 1 cut(s) 789
BfuI GTATCC 1 cut(s) 78
BglI GCCNNNNNGGC 1 cut(s) 1346
BisI GCNGC 2 cut(s) 55, 820
BlsI GCNGC 2 cut(s) 56, 821
BmgT120I GGNCC 1 cut(s) 150
BmiI GGNNCC 5 cut(s) 927, 1074, 1350, 1398, 1437
BmsI GCATC 2 cut(s) 40, 957
BpmI CTGGAG 3 cut(s) 294, 1083, 1233
Bpu10I CCTNAGC 1 cut(s) 999
BpuEI CTTGAG 4 cut(s) 259, 648, 872, 1163
BsaBI GATNNNNATC 1 cut(s) 917
BsaJI CCNNGG 2 cut(s) 628, 1266
BsaXI ACNNNNNCTCC 6 cut(s) 98, 128, 333, 363, 545, 575
Bsc4I CCNNNNNNNGG 3 cut(s) 159, 317, 877
Bse1I ACTGG 3 cut(s) 1100, 1250, 1519
Bse3DI GCAATG 2 cut(s) 747, 1524
Bse8I GATNNNNATC 1 cut(s) 917
BseDI CCNNGG 2 cut(s) 628, 1266
BseGI GGATG 4 cut(s) 190, 205, 715, 1114
BseJI GATNNNNATC 1 cut(s) 917
BseLI CCNNNNNNNGG 3 cut(s) 159, 317, 877
BseMI GCAATG 2 cut(s) 747, 1524
BseMII CTCAG 3 cut(s) 102, 716, 990
BseNI ACTGG 3 cut(s) 1100, 1250, 1519
BseRI GAGGAG 8 cut(s) 218, 455, 476, 500, 512, 890, 953, 1160
BseSI GKGCMC 2 cut(s) 308, 1122
BseXI GCAGC 2 cut(s) 66, 806
BseYI CCCAGC 1 cut(s) 815
Bsh1236I CGCG 1 cut(s) 1139
BshFI GGCC 5 cut(s) 152, 557, 627, 1225, 1340
BshNI GGYRCC 1 cut(s) 1348
BslFI GGGAC 3 cut(s) 67, 790, 798
BslI CCNNNNNNNGG 3 cut(s) 159, 317, 877
BsmFI GGGAC 3 cut(s) 67, 790, 798
BsnI GGCC 5 cut(s) 152, 557, 627, 1225, 1340
Bsp1286I GDGCHC 2 cut(s) 308, 1122
Bsp143I GATC 2 cut(s) 1072, 1396
Bsp19I CCATGG 1 cut(s) 628
BspACI CCGC 3 cut(s) 4, 331, 541
BspANI GGCC 5 cut(s) 152, 557, 627, 1225, 1340
BspCNI CTCAG 3 cut(s) 103, 717, 991
BspFNI CGCG 1 cut(s) 1139
BspLI GGNNCC 5 cut(s) 927, 1074, 1350, 1398, 1437
BspMI ACCTGC 1 cut(s) 789
BspPI GGATC 4 cut(s) 1067, 1080, 1391, 1404
BspT107I GGYRCC 1 cut(s) 1348
BsrBI CCGCTC 1 cut(s) 541
BsrDI GCAATG 2 cut(s) 747, 1524
BsrI ACTGG 3 cut(s) 1100, 1250, 1519
BssECI CCNNGG 2 cut(s) 628, 1266
BssMI GATC 2 cut(s) 1072, 1396
BssT1I CCWWGG 2 cut(s) 628, 1266
Bst4CI ACNGT 1 cut(s) 872
Bst6I CTCTTC 2 cut(s) 319, 1305
BstC8I GCNNGC 4 cut(s) 543, 1200, 1362, 1498
BstDEI CTNAG 5 cut(s) 111, 263, 416, 725, 999
BstDSI CCRYGG 1 cut(s) 628
BstF5I GGATG 4 cut(s) 190, 205, 715, 1114
BstFNI CGCG 1 cut(s) 1139
BstH2I RGCGCY 1 cut(s) 270
BstHHI GCGC 3 cut(s) 54, 269, 1141
BstKTI GATC 2 cut(s) 1075, 1399
BstMBI GATC 2 cut(s) 1072, 1396
BstMWI GCNNNNNNNGC 4 cut(s) 10, 37, 563, 1346
BstSLI GKGCMC 2 cut(s) 308, 1122
BstUI CGCG 1 cut(s) 1139
BstV1I GCAGC 2 cut(s) 66, 806
BstX2I RGATCY 2 cut(s) 1072, 1396
BstXI CCANNNNNNTGG 1 cut(s) 1060
BstYI RGATCY 2 cut(s) 1072, 1396
BsuI GTATCC 1 cut(s) 78
BsuRI GGCC 5 cut(s) 152, 557, 627, 1225, 1340
BtgI CCRYGG 1 cut(s) 628
BtsCI GGATG 4 cut(s) 190, 205, 715, 1114
BtsI GCAGTG 1 cut(s) 1536
BtsIMutI CAGTG 1 cut(s) 1536
BveI ACCTGC 1 cut(s) 789
Cac8I GCNNGC 4 cut(s) 543, 1200, 1362, 1498
CfoI GCGC 3 cut(s) 54, 269, 1141
Cfr13I GGNCC 1 cut(s) 150
CseI GACGC 1 cut(s) 959
Csp6I GTAC 1 cut(s) 1534
CviAII CATG 7 cut(s) 317, 629, 760, 1091, 1221, 1432, 1501
CviQI GTAC 1 cut(s) 1534
DdeI CTNAG 5 cut(s) 111, 263, 416, 725, 999
DpnI GATC 2 cut(s) 1074, 1398
DpnII GATC 2 cut(s) 1072, 1396
DraIII CACNNNGTG 1 cut(s) 159
EaeI YGGCCR 2 cut(s) 625, 1338
Eam1104I CTCTTC 2 cut(s) 319, 1305
EarI CTCTTC 2 cut(s) 319, 1305
Eco130I CCWWGG 2 cut(s) 628, 1266
Eco32I GATATC 1 cut(s) 919
Eco47III AGCGCT 1 cut(s) 268
Eco57I CTGAAG 2 cut(s) 291, 1461
EcoRV GATATC 1 cut(s) 919
EcoT14I CCWWGG 2 cut(s) 628, 1266
ErhI CCWWGG 2 cut(s) 628, 1266
FaeI CATG 7 cut(s) 320, 632, 763, 1094, 1224, 1435, 1504
FaqI GGGAC 3 cut(s) 67, 790, 798
FatI CATG 7 cut(s) 316, 628, 759, 1090, 1220, 1431, 1500
FauI CCCGC 2 cut(s) 324, 534
Fnu4HI GCNGC 2 cut(s) 55, 820
FokI GGATG 4 cut(s) 197, 212, 722, 1121
Fsp4HI GCNGC 2 cut(s) 55, 820
FspBI CTAG 4 cut(s) 482, 614, 1235, 1537
GlaI GCGC 3 cut(s) 53, 268, 1140
GluI GCNGC 2 cut(s) 55, 820
GsaI CCCAGC 1 cut(s) 819
GsuI CTGGAG 3 cut(s) 294, 1083, 1233
HaeII RGCGCY 1 cut(s) 270
HaeIII GGCC 5 cut(s) 152, 557, 627, 1225, 1340
HgaI GACGC 1 cut(s) 959
HhaI GCGC 3 cut(s) 54, 269, 1141
Hin1II CATG 7 cut(s) 320, 632, 763, 1094, 1224, 1435, 1504
Hin6I GCGC 3 cut(s) 52, 267, 1139
HinP1I GCGC 3 cut(s) 52, 267, 1139
HincII GTYRAC 2 cut(s) 868, 974
HindII GTYRAC 2 cut(s) 868, 974
HinfI GANTC 2 cut(s) 206, 1316
HphI GGTGA 2 cut(s) 602, 1403
Hpy166II GTNNAC 4 cut(s) 700, 868, 974, 1534
Hpy188I TCNGA 3 cut(s) 413, 726, 1321
Hpy188III TCNNGA 4 cut(s) 35, 311, 665, 1255
Hpy8I GTNNAC 4 cut(s) 700, 868, 974, 1534
HpyAV CCTTC 3 cut(s) 266, 788, 1086
HpyCH4III ACNGT 1 cut(s) 872
HpyCH4IV ACGT 1 cut(s) 382
HpyCH4V TGCA 8 cut(s) 98, 424, 533, 822, 1011, 1496, 1524, 1529
HpyF10VI GCNNNNNNNGC 4 cut(s) 10, 37, 563, 1346
HpyF3I CTNAG 5 cut(s) 111, 263, 416, 725, 999
HpySE526I ACGT 1 cut(s) 382
Hsp92II CATG 7 cut(s) 320, 632, 763, 1094, 1224, 1435, 1504
HspAI GCGC 3 cut(s) 52, 267, 1139
Kzo9I GATC 2 cut(s) 1072, 1396
LmnI GCTCC 3 cut(s) 685, 925, 1435
Lsp1109I GCAGC 2 cut(s) 66, 806
LweI GCATC 2 cut(s) 40, 957
MaeI CTAG 4 cut(s) 482, 614, 1235, 1537
MaeII ACGT 1 cut(s) 382
MaeIII GTNAC 3 cut(s) 131, 349, 1510
MalI GATC 2 cut(s) 1074, 1398
MbiI CCGCTC 1 cut(s) 541
MboI GATC 2 cut(s) 1072, 1396
MflI RGATCY 2 cut(s) 1072, 1396
MhlI GDGCHC 2 cut(s) 308, 1122
MlsI TGGCCA 2 cut(s) 627, 1340
MluCI AATT 5 cut(s) 525, 720, 1182, 1328, 1343
MluNI TGGCCA 2 cut(s) 627, 1340
MlyI GAGTC 2 cut(s) 215, 1310
MmeI TCCRAC 3 cut(s) 84, 666, 783
Mox20I TGGCCA 2 cut(s) 627, 1340
MscI TGGCCA 2 cut(s) 627, 1340
MseI TTAA 3 cut(s) 290, 789, 983
MslI CAYNNNNRTG 3 cut(s) 615, 1058, 1529
Msp20I TGGCCA 2 cut(s) 627, 1340
MspA1I CMGCKG 2 cut(s) 650, 819
MvnI CGCG 1 cut(s) 1139
MwoI GCNNNNNNNGC 4 cut(s) 10, 37, 563, 1346
NcoI CCATGG 1 cut(s) 628
NdeII GATC 2 cut(s) 1072, 1396
NlaIII CATG 7 cut(s) 320, 632, 763, 1094, 1224, 1435, 1504
NlaIV GGNNCC 5 cut(s) 927, 1074, 1350, 1398, 1437
NmuCI GTSAC 2 cut(s) 131, 349
PflMI CCANNNNNTGG 2 cut(s) 159, 317
PkrI GCNGC 2 cut(s) 56, 821
PleI GAGTC 2 cut(s) 214, 1310
PpsI GAGTC 2 cut(s) 214, 1310
PspFI CCCAGC 1 cut(s) 815
PspN4I GGNNCC 5 cut(s) 927, 1074, 1350, 1398, 1437
PspPI GGNCC 1 cut(s) 150
PsuI RGATCY 2 cut(s) 1072, 1396
PvuII CAGCTG 2 cut(s) 650, 819
RsaI GTAC 1 cut(s) 1535
RsaNI GTAC 1 cut(s) 1534
RseI CAYNNNNRTG 3 cut(s) 615, 1058, 1529
SaqAI TTAA 3 cut(s) 290, 789, 983
SatI GCNGC 2 cut(s) 55, 820
Sau3AI GATC 2 cut(s) 1072, 1396
Sau96I GGNCC 1 cut(s) 150
SchI GAGTC 2 cut(s) 215, 1310
SduI GDGCHC 2 cut(s) 308, 1122
SfaNI GCATC 2 cut(s) 40, 957
SmiMI CAYNNNNRTG 3 cut(s) 615, 1058, 1529
SmlI CTYRAG 4 cut(s) 238, 663, 851, 1142
SmoI CTYRAG 4 cut(s) 238, 663, 851, 1142
Sse9I AATT 5 cut(s) 525, 720, 1182, 1328, 1343
SsiI CCGC 3 cut(s) 4, 331, 541
SspI AATATT 1 cut(s) 432
SspMI CTAG 4 cut(s) 482, 614, 1235, 1537
StyI CCWWGG 2 cut(s) 628, 1266
TaaI ACNGT 1 cut(s) 872
TaiI ACGT 1 cut(s) 385
TasI AATT 5 cut(s) 525, 720, 1182, 1328, 1343
TatI WGTACW 1 cut(s) 1533
Tru1I TTAA 3 cut(s) 290, 789, 983
Tru9I TTAA 3 cut(s) 290, 789, 983
TscAI CASTG 1 cut(s) 1536
TseFI GTSAC 2 cut(s) 131, 349
TseI GCWGC 2 cut(s) 54, 819
Tsp45I GTSAC 2 cut(s) 131, 349
TspDTI ATGAA 3 cut(s) 1079, 1194, 1356
TspGWI ACGGA 2 cut(s) 672, 686
TspRI CASTG 1 cut(s) 1536
Van91I CCANNNNNTGG 2 cut(s) 159, 317
XapI RAATTY 2 cut(s) 720, 1328
XcmI CCANNNNNNNNNTGG 1 cut(s) 1088
XspI CTAG 4 cut(s) 482, 614, 1235, 1537
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.