Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0023300.1

Orthogroup ID

OG0000529

Physical Location & Seq

Genomic Coordinates Reverse (-)

396 .. 2988

Gene Structure 2593 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0023300.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1248 bp

atggctaatatgctcaactttcctaagaataatttaaacaatgagggaaatcttcggacagtccttgatgttggctgtggtgttgctagttttggaggttacctgctgtcttcagatatcattacaatgtccttggcacctaacgatgtccatcaaaatcagatccagtttgctttagaaagaggaattcctgcatatcttggtgttctagggacaaagagactcccttacccaagtcgatcttttgaactggcacattgttctcgctgtaggattgactggcttcaaagggatgggatacttctccttgagctagatagggtactcagaccaggaggctattttgcctactcatctcccgaagcctatgcacaggatgaggaggatctgagaatatggaagcagatgagtgcccttgtggaacggatgtgttggaaaatagctgctaaaaagaaccaaactgttatttgggaaaagcccatgactaatgattgttacatggcaagacagcctggaactcaacctccgctttgtaaatcggatgctgatccagatgccacctgggatgtgaaaatggaggcttgcatcactccatacactgaacaaattcagagagcaaggggaagtggtttggctccttggcctgctcgattgacaacacctcctccccgtcttactgactttggctattctgctgatgtatttgaaaaggacatggaagtatggcagcaaagagttgacaattactggaatcttttgagccccaagattaatcctgacacagtgagaaatgtgatggacatgaaggcacacatgggttcatttgcagcttctttaaggaacaaacctgtttgggttatgaatgtggtgccagaagacggacctaacacactgaaaataatatatgatagaggcctaataggctcaatacacagctggtgtgaagcctactcaacctacccgagaacttatgatctacttcatgcttggaccgtcttctctgatgttgaaaggaaaggatgtagtgccgttgacttgatgattgagatggatcgcatcctccggcccaaaggtttcatcattgtccgtgataagccgagggtagtggggtacattaaaaaatacatgaaggcatttcactgggaagcagtggccagtgctgatgcagaccaagatgaggatgatgcagtgttgattatccagaaaaagatttggcgtaccagcgagagcgttagggagttagaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005774 GO:0005794 GO:0005802 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0012505 GO:0016020 GO:0016740 GO:0016741 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0032259 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098588 GO:0098791 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_29

Protein Analysis

415

Amino Acids

47.41

Weight (kDa)

6.15

Isoelectric Point (pI)

34.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000529)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04430 AT1G04430 AT1G04430 AT3G23300 AT3G23300 AT4G14360 AT4G14360
fragaria_vesca	FvH4_2g21260 FvH4_2g21260 FvH4_2g21260 FvH4_4g03770 FvH4_4g03770 FvH4_4g03770 FvH4_4g03770 FvH4_4g03770 FvH4_4g03770
malus_domestica	MD05G1195000.v1.1 MD10G1181600.v1.1 MD10G1182100.v1.1 MD13G1215000.v1.1
prunus_persica	Prupe.1G040400_v2.0.a1 Prupe.1G040400_v2.0.a1 Prupe.1G040400_v2.0.a1 Prupe.1G040400_v2.0.a1 Prupe.8G221700_v2.0.a1 Prupe.8G221700_v2.0.a1 Prupe.8G221700_v2.0.a1
pyrus_communis	pycom05g18230 pycom10g15760 pycom10g15770 pycom111g01800
rosa_chinensis	RchiOBHm_Chr4g0393501 RchiOBHm_Chr4g0393511 RchiOBHm_Chr4g0393631 RchiOBHm_Chr6g0287841
rosa_laevigata	RLG00000009742 RLG00000012463
rosa_multiflora	Rmu_sc0001531.1_g000028 Rmu_sc0003877.1_g000004 Rmu_sc0007724.1_g000003 Rmu_sc0008931.1_g000001 Rmu_sc0015036.1_g000004 Rmu_sc0021463.1_g000002 Rmu_sc0023299.1_g000001 Rmu_sc0023300.1_g000001 Rmu_sc0036005.1_g000001
rosa_roxburghii	Rroxscaffold_5G00338440 Rroxscaffold_5G00338470 Rroxscaffold_5G00338730 Rroxscaffold_5G00338790 Rroxscaffold_7G00180730 Rroxscaffold_7G00180820
rosa_rugosa	Rorug03G0372400 Rorug03G0372500 Rorug03G0372600 Rorug04G0000100 Rorug04G0000200 Rorug04G0000300 Rorug04G0000400 Rorug04G0000500 Rorug04G0000600.1 Rorug04G0000700 Rorug04G0000800 Rorug04G0000900 Rorug06G0192300 Rorug06G0192400 Rorug06G0192500
rosa_samantha	Rh4AG047800 Rh4AG048100 Rh4BG043700 Rh4BG044600 Rh4CG050500 Rh4CG050600 Rh4CG050700 Rh4CG051400 Rh4DG045000 Rh4DG045300 Rh6AG302000 Rh6BG307900 Rh6CG301600 Rh6CG315800 Rh6DG300500
rosa_wichuraiana	Rw4G003770 Rw4G003800 Rw6G026090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	111
AccB1I	GGYRCC	2 cut(s)	136, 868
AciI	CCGC	1 cut(s)	527
AclWI	GGATC	4 cut(s)	157, 393, 542, 1059
AcoI	YGGCCR	1 cut(s)	1152
AcsI	RAATTY	2 cut(s)	186, 606
AcuI	CTGAAG	1 cut(s)	96
AfaI	GTAC	3 cut(s)	324, 1112, 1219
AfiI	CCNNNNNNNGG	2 cut(s)	878, 1177
AgsI	TTSAA	4 cut(s)	248, 287, 707, 1010
AjnI	CCWGG	3 cut(s)	331, 511, 560
AloI	GAACNNNNNNTCC	2 cut(s)	508, 540
AluBI	AGCT	4 cut(s)	313, 443, 830, 936
AluI	AGCT	4 cut(s)	313, 443, 830, 936
Alw26I	GTCTC	1 cut(s)	214
AlwI	GGATC	4 cut(s)	157, 393, 542, 1059
Ama87I	CYCGRG	1 cut(s)	961
AoxI	GGCC	4 cut(s)	641, 913, 1064, 1152
ApeKI	GCWGC	3 cut(s)	443, 727, 827
ApoI	RAATTY	2 cut(s)	186, 606
AseI	ATTAAT	1 cut(s)	771
Asp700I	GAANNNNTTC	1 cut(s)	606
AspS9I	GGNCC	3 cut(s)	881, 990, 1065
AvaI	CYCGRG	1 cut(s)	961
AvaII	GGWCC	2 cut(s)	881, 990
BaeGI	GKGCMC	1 cut(s)	415
BalI	TGGCCA	1 cut(s)	1154
BanI	GGYRCC	2 cut(s)	136, 868
BanII	GRGCYC	1 cut(s)	764
BbsI	GAAGAC	3 cut(s)	102, 882, 988
BbvI	GCAGC	3 cut(s)	430, 739, 839
BccI	CCATC	4 cut(s)	159, 287, 790, 1042
BceAI	ACGGC	1 cut(s)	1013
BcgI	CGANNNNNNTGC	2 cut(s)	350, 384
BciT130I	CCWGG	3 cut(s)	333, 513, 562
BciVI	GTATCC	1 cut(s)	291
BcoDI	GTCTC	1 cut(s)	214
BfaI	CTAG	3 cut(s)	87, 209, 314
BfmI	CTRYAG	1 cut(s)	268
BfuAI	ACCTGC	1 cut(s)	111
BfuI	GTATCC	1 cut(s)	291
BglI	GCCNNNNNGGC	1 cut(s)	921
BisI	GCNGC	3 cut(s)	444, 728, 828
BlsI	GCNGC	3 cut(s)	445, 729, 829
Bme1390I	CCNGG	3 cut(s)	333, 513, 562
Bme18I	GGWCC	2 cut(s)	881, 990
BmeT110I	CYCGRG	1 cut(s)	961
BmgT120I	GGNCC	3 cut(s)	881, 990, 1065
BmiI	GGNNCC	3 cut(s)	138, 636, 870
BmrFI	CCNGG	3 cut(s)	333, 513, 562
BmrI	ACTGGG	1 cut(s)	1150
BmsI	GCATC	6 cut(s)	532, 544, 594, 1065, 1153, 1174
BmuI	ACTGGG	1 cut(s)	1150
BpiI	GAAGAC	3 cut(s)	102, 882, 988
BpuEI	CTTGAG	1 cut(s)	329
BsaBI	GATNNNNATC	2 cut(s)	150, 546
BsaJI	CCNNGG	4 cut(s)	132, 561, 638, 1097
BsaXI	ACNNNNNCTCC	6 cut(s)	508, 538, 646, 649, 676, 679
Bsc4I	CCNNNNNNNGG	2 cut(s)	878, 1177
Bse1I	ACTGG	6 cut(s)	166, 255, 284, 752, 1145, 1155
Bse8I	GATNNNNATC	2 cut(s)	150, 546
BseBI	CCWGG	3 cut(s)	333, 513, 562
BseDI	CCNNGG	4 cut(s)	132, 561, 638, 1097
BseGI	GGATG	8 cut(s)	298, 382, 432, 547, 571, 1025, 1056, 1186
BseJI	GATNNNNATC	2 cut(s)	150, 546
BseLI	CCNNNNNNNGG	2 cut(s)	878, 1177
BseMII	CTCAG	2 cut(s)	340, 380
BseNI	ACTGG	6 cut(s)	166, 255, 284, 752, 1145, 1155
BseRI	GAGGAG	2 cut(s)	395, 654
BseSI	GKGCMC	1 cut(s)	415
BseXI	GCAGC	3 cut(s)	430, 739, 839
BshFI	GGCC	4 cut(s)	643, 915, 1066, 1154
BshNI	GGYRCC	2 cut(s)	136, 868
BsiHKCI	CYCGRG	1 cut(s)	961
BsiSI	CCGG	1 cut(s)	1063
BslFI	GGGAC	1 cut(s)	226
BslI	CCNNNNNNNGG	2 cut(s)	878, 1177
BsmAI	GTCTC	1 cut(s)	214
BsmFI	GGGAC	1 cut(s)	226
BsnI	GGCC	4 cut(s)	643, 915, 1066, 1154
BsoBI	CYCGRG	1 cut(s)	961
Bsp1286I	GDGCHC	2 cut(s)	415, 764
Bsp143I	GATC	6 cut(s)	162, 239, 385, 547, 973, 1051
BspACI	CCGC	1 cut(s)	527
BspANI	GGCC	4 cut(s)	643, 915, 1066, 1154
BspCNI	CTCAG	2 cut(s)	339, 381
BspLI	GGNNCC	3 cut(s)	138, 636, 870
BspMI	ACCTGC	1 cut(s)	111
BspPI	GGATC	4 cut(s)	157, 393, 542, 1059
BspT107I	GGYRCC	2 cut(s)	136, 868
BsrI	ACTGG	6 cut(s)	166, 255, 284, 752, 1145, 1155
BssECI	CCNNGG	4 cut(s)	132, 561, 638, 1097
BssMI	GATC	6 cut(s)	162, 239, 385, 547, 973, 1051
BssT1I	CCWWGG	2 cut(s)	132, 638
Bst2UI	CCWGG	3 cut(s)	333, 513, 562
Bst4CI	ACNGT	4 cut(s)	61, 463, 784, 994
BstC8I	GCNNGC	2 cut(s)	583, 645
BstDEI	CTNAG	3 cut(s)	24, 326, 389
BstEII	GGTNACC	1 cut(s)	98
BstF5I	GGATG	8 cut(s)	298, 382, 432, 547, 571, 1025, 1056, 1186
BstKTI	GATC	6 cut(s)	165, 242, 388, 550, 976, 1054
BstMAI	GTCTC	1 cut(s)	214
BstMBI	GATC	6 cut(s)	162, 239, 385, 547, 973, 1051
BstMWI	GCNNNNNNNGC	1 cut(s)	921
BstNI	CCWGG	3 cut(s)	333, 513, 562
BstPI	GGTNACC	1 cut(s)	98
BstSCI	CCNGG	3 cut(s)	331, 511, 560
BstSFI	CTRYAG	1 cut(s)	268
BstSLI	GKGCMC	1 cut(s)	415
BstV1I	GCAGC	3 cut(s)	430, 739, 839
BstV2I	GAAGAC	3 cut(s)	102, 882, 988
BstX2I	RGATCY	2 cut(s)	162, 385
BstYI	RGATCY	2 cut(s)	162, 385
BsuI	GTATCC	1 cut(s)	291
BsuRI	GGCC	4 cut(s)	643, 915, 1066, 1154
BtsCI	GGATG	8 cut(s)	298, 382, 432, 547, 571, 1025, 1056, 1186
BtsI	GCAGTG	2 cut(s)	1155, 1194
BtsIMutI	CAGTG	7 cut(s)	597, 789, 890, 1138, 1155, 1162, 1194
BveI	ACCTGC	1 cut(s)	111
Cac8I	GCNNGC	2 cut(s)	583, 645
Cfr13I	GGNCC	3 cut(s)	881, 990, 1065
Csp6I	GTAC	3 cut(s)	323, 1111, 1218
CviAII	CATG	7 cut(s)	481, 499, 715, 802, 814, 983, 1126
CviQI	GTAC	3 cut(s)	323, 1111, 1218
DdeI	CTNAG	3 cut(s)	24, 326, 389
DpnI	GATC	6 cut(s)	164, 241, 387, 549, 975, 1053
DpnII	GATC	6 cut(s)	162, 239, 385, 547, 973, 1051
DraI	TTTAAA	1 cut(s)	36
EaeI	YGGCCR	1 cut(s)	1152
Eco130I	CCWWGG	2 cut(s)	132, 638
Eco147I	AGGCCT	1 cut(s)	915
Eco24I	GRGCYC	1 cut(s)	764
Eco32I	GATATC	1 cut(s)	118
Eco47I	GGWCC	2 cut(s)	881, 990
Eco57I	CTGAAG	1 cut(s)	96
Eco88I	CYCGRG	1 cut(s)	961
Eco91I	GGTNACC	1 cut(s)	98
EcoO65I	GGTNACC	1 cut(s)	98
EcoRI	GAATTC	1 cut(s)	186
EcoRII	CCWGG	3 cut(s)	331, 511, 560
EcoRV	GATATC	1 cut(s)	118
EcoT14I	CCWWGG	2 cut(s)	132, 638
EcoT38I	GRGCYC	1 cut(s)	764
ErhI	CCWWGG	2 cut(s)	132, 638
FaeI	CATG	7 cut(s)	484, 502, 718, 805, 817, 986, 1129
FalI	AAGNNNNNCTT	2 cut(s)	226, 258
FaqI	GGGAC	1 cut(s)	226
FatI	CATG	7 cut(s)	480, 498, 714, 801, 813, 982, 1125
Fnu4HI	GCNGC	3 cut(s)	444, 728, 828
FokI	GGATG	8 cut(s)	305, 389, 439, 554, 578, 1032, 1043, 1193
FriOI	GRGCYC	1 cut(s)	764
Fsp4HI	GCNGC	3 cut(s)	444, 728, 828
FspBI	CTAG	3 cut(s)	87, 209, 314
GluI	GCNGC	3 cut(s)	444, 728, 828
HaeIII	GGCC	4 cut(s)	643, 915, 1066, 1154
HapII	CCGG	1 cut(s)	1063
Hin1II	CATG	7 cut(s)	484, 502, 718, 805, 817, 986, 1129
HincII	GTYRAC	2 cut(s)	739, 1033
HindII	GTYRAC	2 cut(s)	739, 1033
HinfI	GANTC	2 cut(s)	222, 751
HpaII	CCGG	1 cut(s)	1063
Hpy166II	GTNNAC	2 cut(s)	739, 1033
Hpy188I	TCNGA	8 cut(s)	57, 115, 162, 329, 390, 541, 612, 1003
Hpy188III	TCNNGA	4 cut(s)	359, 551, 776, 1201
Hpy8I	GTNNAC	2 cut(s)	739, 1033
HpyAV	CCTTC	2 cut(s)	799, 1123
HpyCH4III	ACNGT	4 cut(s)	61, 463, 784, 994
HpyCH4V	TGCA	6 cut(s)	194, 371, 585, 827, 1166, 1187
HpyF10VI	GCNNNNNNNGC	1 cut(s)	921
HpyF3I	CTNAG	3 cut(s)	24, 326, 389
Hsp92II	CATG	7 cut(s)	484, 502, 718, 805, 817, 986, 1129
Kzo9I	GATC	6 cut(s)	162, 239, 385, 547, 973, 1051
LmnI	GCTCC	1 cut(s)	640
Lsp1109I	GCAGC	3 cut(s)	430, 739, 839
LweI	GCATC	6 cut(s)	532, 544, 594, 1065, 1153, 1174
MaeI	CTAG	3 cut(s)	87, 209, 314
MaeIII	GTNAC	2 cut(s)	98, 494
MalI	GATC	6 cut(s)	164, 241, 387, 549, 975, 1053
MboI	GATC	6 cut(s)	162, 239, 385, 547, 973, 1051
MboII	GAAGA	4 cut(s)	44, 102, 887, 988
MflI	RGATCY	2 cut(s)	162, 385
MhlI	GDGCHC	2 cut(s)	415, 764
MlsI	TGGCCA	1 cut(s)	1154
MluCI	AATT	4 cut(s)	31, 186, 606, 742
MluNI	TGGCCA	1 cut(s)	1154
MlyI	GAGTC	1 cut(s)	216
MmeI	TCCRAC	1 cut(s)	413
Mox20I	TGGCCA	1 cut(s)	1154
MroXI	GAANNNNTTC	1 cut(s)	606
MscI	TGGCCA	1 cut(s)	1154
MseI	TTAA	4 cut(s)	35, 771, 836, 1116
MslI	CAYNNNNRTG	1 cut(s)	125
Msp20I	TGGCCA	1 cut(s)	1154
MspA1I	CMGCKG	1 cut(s)	936
MspI	CCGG	1 cut(s)	1063
MspR9I	CCNGG	3 cut(s)	333, 513, 562
MvaI	CCWGG	3 cut(s)	333, 513, 562
MwoI	GCNNNNNNNGC	1 cut(s)	921
NdeII	GATC	6 cut(s)	162, 239, 385, 547, 973, 1051
NlaIII	CATG	7 cut(s)	484, 502, 718, 805, 817, 986, 1129
NlaIV	GGNNCC	3 cut(s)	138, 636, 870
NmeAIII	GCCGAG	1 cut(s)	1122
PceI	AGGCCT	1 cut(s)	915
PdmI	GAANNNNTTC	1 cut(s)	606
PfeI	GAWTC	1 cut(s)	751
PkrI	GCNGC	3 cut(s)	445, 729, 829
PleI	GAGTC	1 cut(s)	216
PpsI	GAGTC	1 cut(s)	216
PshBI	ATTAAT	1 cut(s)	771
Psp6I	CCWGG	3 cut(s)	331, 511, 560
PspEI	GGTNACC	1 cut(s)	98
PspGI	CCWGG	3 cut(s)	331, 511, 560
PspN4I	GGNNCC	3 cut(s)	138, 636, 870
PspPI	GGNCC	3 cut(s)	881, 990, 1065
PsuI	RGATCY	2 cut(s)	162, 385
PvuII	CAGCTG	1 cut(s)	936
RsaI	GTAC	3 cut(s)	324, 1112, 1219
RsaNI	GTAC	3 cut(s)	323, 1111, 1218
RseI	CAYNNNNRTG	1 cut(s)	125
SaqAI	TTAA	4 cut(s)	35, 771, 836, 1116
SatI	GCNGC	3 cut(s)	444, 728, 828
Sau3AI	GATC	6 cut(s)	162, 239, 385, 547, 973, 1051
Sau96I	GGNCC	3 cut(s)	881, 990, 1065
SchI	GAGTC	1 cut(s)	216
ScrFI	CCNGG	3 cut(s)	333, 513, 562
SduI	GDGCHC	2 cut(s)	415, 764
SfaNI	GCATC	6 cut(s)	532, 544, 594, 1065, 1153, 1174
SfcI	CTRYAG	1 cut(s)	268
SinI	GGWCC	2 cut(s)	881, 990
SmiMI	CAYNNNNRTG	1 cut(s)	125
SmlI	CTYRAG	1 cut(s)	308
SmoI	CTYRAG	1 cut(s)	308
Sse9I	AATT	4 cut(s)	31, 186, 606, 742
SseBI	AGGCCT	1 cut(s)	915
SsiI	CCGC	1 cut(s)	527
SspMI	CTAG	3 cut(s)	87, 209, 314
StuI	AGGCCT	1 cut(s)	915
StyD4I	CCNGG	3 cut(s)	331, 511, 560
StyI	CCWWGG	2 cut(s)	132, 638
TaaI	ACNGT	4 cut(s)	61, 463, 784, 994
TaqI	TCGA	2 cut(s)	238, 649
TasI	AATT	4 cut(s)	31, 186, 606, 742
TfiI	GAWTC	1 cut(s)	751
Tru1I	TTAA	4 cut(s)	35, 771, 836, 1116
Tru9I	TTAA	4 cut(s)	35, 771, 836, 1116
TscAI	CASTG	7 cut(s)	604, 789, 897, 1145, 1155, 1162, 1194
TseI	GCWGC	3 cut(s)	443, 727, 827
TspDTI	ATGAA	6 cut(s)	810, 818, 875, 971, 1066, 1142
TspGWI	ACGGA	3 cut(s)	439, 894, 1076
TspRI	CASTG	7 cut(s)	604, 789, 897, 1145, 1155, 1162, 1194
VpaK11BI	GGWCC	2 cut(s)	881, 990
VspI	ATTAAT	1 cut(s)	771
XapI	RAATTY	2 cut(s)	186, 606
XcmI	CCANNNNNNNNNTGG	1 cut(s)	558
XmnI	GAANNNNTTC	1 cut(s)	606
XspI	CTAG	3 cut(s)	87, 209, 314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.