Rorug04G0000900

Putative S-adenosyl-L-methionine-dependent methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000529
Physical Location & Seq
Forward (+)
188948 .. 189756
809 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0000900.1

Sequence Viewer

Length: 597 bp
ATGGAACCACAACAACAGCAACCAACAGAGGAGGGAGGAAACACCCAAGCAGCTGGAAGTAGTGCCAACATGGATTTCTGGCGAAGCCGTACCAGATGGATTCCTACTCCAGAACAAATAAGAATCCTCAAGGATCTTTACTACGTCAAGGGATTTAAGTGCCCATCTACAGAGCACATTCACGAGATCTGCCTCCAGCTGAACCAGTATGGACATGTTGAGGGTAAGAACATTTACTTTTGGTTCCAGAACGTCAGGGCTCGAGAGAAGCAGATGAATAGGTGTAATCAGGCTGCTCCAGTGCCCATGGGAACTAGTTCTCTTGGTACTGGTGGATCCATCGATCTCAATTTTGGGTCCACTGGTTCTACTGGTGCTGGAGGACAAACATCCCTGCAACAACGAGGAGGAGATCACCAGGAGGTTGAAACTCTTCCTCTGTTCCCCGTGCACGGCGAGGACGTCTTTGGTAACCCGAAGACTACTTCCGAGGAAGGTAGCGCATTTGGTTACTATTCTGGTGGCTCAGGCGGTTACCACAGTGGCTCTAACGTTTCTCTTGAGCTCAGCCTCAATCCATCTGGAGCTGCTGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Methyltransf_29 zf-C3HC4_3

Protein Analysis

198

Amino Acids

21.48

Weight (kDa)

5.49

Isoelectric Point (pI)

48.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 30 - 91 1.1e-09 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000529)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04430 AT1G04430 AT1G04430 AT3G23300 AT3G23300 AT4G14360 AT4G14360
fragaria_vesca FvH4_2g21260 FvH4_2g21260 FvH4_2g21260 FvH4_4g03770 FvH4_4g03770 FvH4_4g03770 FvH4_4g03770 FvH4_4g03770 FvH4_4g03770
malus_domestica MD05G1195000.v1.1 MD10G1181600.v1.1 MD10G1182100.v1.1 MD13G1215000.v1.1
prunus_persica Prupe.1G040400_v2.0.a1 Prupe.1G040400_v2.0.a1 Prupe.1G040400_v2.0.a1 Prupe.1G040400_v2.0.a1 Prupe.8G221700_v2.0.a1 Prupe.8G221700_v2.0.a1 Prupe.8G221700_v2.0.a1
pyrus_communis pycom05g18230 pycom10g15760 pycom10g15770 pycom111g01800
rosa_chinensis RchiOBHm_Chr4g0393501 RchiOBHm_Chr4g0393511 RchiOBHm_Chr4g0393631 RchiOBHm_Chr6g0287841
rosa_laevigata RLG00000009742 RLG00000012463
rosa_multiflora Rmu_sc0001531.1_g000028 Rmu_sc0003877.1_g000004 Rmu_sc0007724.1_g000003 Rmu_sc0008931.1_g000001 Rmu_sc0015036.1_g000004 Rmu_sc0021463.1_g000002 Rmu_sc0023299.1_g000001 Rmu_sc0023300.1_g000001 Rmu_sc0036005.1_g000001
rosa_roxburghii Rroxscaffold_5G00338440 Rroxscaffold_5G00338470 Rroxscaffold_5G00338730 Rroxscaffold_5G00338790 Rroxscaffold_7G00180730 Rroxscaffold_7G00180820
rosa_rugosa Rorug03G0372400 Rorug03G0372500 Rorug03G0372600 Rorug04G0000100 Rorug04G0000200 Rorug04G0000300 Rorug04G0000400 Rorug04G0000500 Rorug04G0000600.1 Rorug04G0000700 Rorug04G0000800 Rorug04G0000900 Rorug06G0192300 Rorug06G0192400 Rorug06G0192500
rosa_samantha Rh4AG047800 Rh4AG048100 Rh4BG043700 Rh4BG044600 Rh4CG050500 Rh4CG050600 Rh4CG050700 Rh4CG051400 Rh4DG045000 Rh4DG045300 Rh6AG302000 Rh6BG307900 Rh6CG301600 Rh6CG315800 Rh6DG300500
rosa_wichuraiana Rw4G003770 Rw4G003800 Rw6G026090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 465
AciI CCGC 1 cut(s) 531
AclI AACGTT 1 cut(s) 552
AclWI GGATC 3 cut(s) 141, 330, 343
AcyI GRCGYC 1 cut(s) 462
AfaI GTAC 2 cut(s) 91, 328
AfiI CCNNNNNNNGG 1 cut(s) 452
AflIII ACRYGT 1 cut(s) 214
AgsI TTSAA 1 cut(s) 428
AhlI ACTAGT 1 cut(s) 314
AjnI CCWGG 1 cut(s) 417
AjuI GAANNNNNNNTTGG 2 cut(s) 59, 91
AluBI AGCT 4 cut(s) 53, 199, 565, 587
AluI AGCT 4 cut(s) 53, 199, 565, 587
Alw21I GWGCWC 3 cut(s) 177, 453, 567
Alw44I GTGCAC 1 cut(s) 449
AlwI GGATC 3 cut(s) 141, 330, 343
Ama87I CYCGRG 1 cut(s) 261
ApaLI GTGCAC 1 cut(s) 449
ApeKI GCWGC 3 cut(s) 50, 293, 587
Asp700I GAANNNNTTC 2 cut(s) 316, 432
AspLEI GCGC 1 cut(s) 503
AspS9I GGNCC 1 cut(s) 357
AsuHPI GGTGA 1 cut(s) 407
AvaI CYCGRG 1 cut(s) 261
AvaII GGWCC 1 cut(s) 357
BaeGI GKGCMC 3 cut(s) 164, 306, 453
BamHI GGATCC 1 cut(s) 335
BanII GRGCYC 2 cut(s) 262, 567
BauI CACGAG 1 cut(s) 182
BbsI GAAGAC 1 cut(s) 485
Bbv12I GWGCWC 3 cut(s) 177, 453, 567
BbvI GCAGC 3 cut(s) 62, 280, 574
BccI CCATC 4 cut(s) 90, 172, 347, 586
BceAI ACGGC 2 cut(s) 72, 469
BciT130I CCWGG 1 cut(s) 419
BcuI ACTAGT 1 cut(s) 314
BfaI CTAG 2 cut(s) 315, 595
BfmI CTRYAG 1 cut(s) 168
BglII AGATCT 1 cut(s) 186
BisI GCNGC 3 cut(s) 51, 294, 588
BlpI GCTNAGC 1 cut(s) 566
BlsI GCNGC 3 cut(s) 52, 295, 589
Bme1390I CCNGG 1 cut(s) 419
Bme18I GGWCC 1 cut(s) 357
BmeT110I CYCGRG 1 cut(s) 261
BmgT120I GGNCC 1 cut(s) 357
BmiI GGNNCC 4 cut(s) 6, 245, 337, 358
BmrFI CCNGG 1 cut(s) 419
BpiI GAAGAC 1 cut(s) 485
BpmI CTGGAG 4 cut(s) 93, 179, 282, 399
Bpu10I CCTNAGC 1 cut(s) 526
Bpu1102I GCTNAGC 1 cut(s) 566
BpuEI CTTGAG 2 cut(s) 113, 581
Bsa29I ATCGAT 1 cut(s) 342
BsaHI GRCGYC 1 cut(s) 462
BsaJI CCNNGG 2 cut(s) 306, 489
Bsc4I CCNNNNNNNGG 1 cut(s) 452
Bse1I ACTGG 5 cut(s) 205, 299, 334, 367, 376
BseBI CCWGG 1 cut(s) 419
BseCI ATCGAT 1 cut(s) 342
BseDI CCNNGG 2 cut(s) 306, 489
BseGI GGATG 1 cut(s) 389
BseLI CCNNNNNNNGG 1 cut(s) 452
BseMII CTCAG 2 cut(s) 540, 580
BseNI ACTGG 5 cut(s) 205, 299, 334, 367, 376
BseRI GAGGAG 3 cut(s) 44, 420, 423
BseSI GKGCMC 3 cut(s) 164, 306, 453
BseXI GCAGC 3 cut(s) 62, 280, 574
BshVI ATCGAT 1 cut(s) 342
BsiHKAI GWGCWC 3 cut(s) 177, 453, 567
BsiHKCI CYCGRG 1 cut(s) 261
BslI CCNNNNNNNGG 1 cut(s) 452
BsoBI CYCGRG 1 cut(s) 261
Bsp1286I GDGCHC 6 cut(s) 164, 177, 262, 306, 453, 567
Bsp143I GATC 5 cut(s) 133, 186, 335, 343, 412
Bsp1720I GCTNAGC 1 cut(s) 566
Bsp19I CCATGG 1 cut(s) 306
BspACI CCGC 1 cut(s) 531
BspCNI CTCAG 2 cut(s) 539, 579
BspDI ATCGAT 1 cut(s) 342
BspLI GGNNCC 4 cut(s) 6, 245, 337, 358
BspPI GGATC 3 cut(s) 141, 330, 343
BsrI ACTGG 5 cut(s) 205, 299, 334, 367, 376
BssECI CCNNGG 2 cut(s) 306, 489
BssMI GATC 5 cut(s) 133, 186, 335, 343, 412
BssNI GRCGYC 1 cut(s) 462
BssSI CACGAG 1 cut(s) 182
BssT1I CCWWGG 1 cut(s) 306
Bst2BI CACGAG 1 cut(s) 182
Bst2UI CCWGG 1 cut(s) 419
Bst4CI ACNGT 1 cut(s) 542
Bst6I CTCTTC 1 cut(s) 438
BstACI GRCGYC 1 cut(s) 462
BstDEI CTNAG 2 cut(s) 526, 566
BstDSI CCRYGG 1 cut(s) 306
BstEII GGTNACC 2 cut(s) 470, 533
BstF5I GGATG 1 cut(s) 389
BstHHI GCGC 1 cut(s) 503
BstKTI GATC 5 cut(s) 136, 189, 338, 346, 415
BstMBI GATC 5 cut(s) 133, 186, 335, 343, 412
BstNI CCWGG 1 cut(s) 419
BstNSI RCATGY 1 cut(s) 218
BstPI GGTNACC 2 cut(s) 470, 533
BstSCI CCNGG 1 cut(s) 417
BstSFI CTRYAG 1 cut(s) 168
BstSLI GKGCMC 3 cut(s) 164, 306, 453
BstV1I GCAGC 3 cut(s) 62, 280, 574
BstV2I GAAGAC 1 cut(s) 485
BstX2I RGATCY 3 cut(s) 133, 186, 335
BstXI CCANNNNNNTGG 1 cut(s) 53
BstYI RGATCY 3 cut(s) 133, 186, 335
Bsu15I ATCGAT 1 cut(s) 342
BsuTUI ATCGAT 1 cut(s) 342
BtgI CCRYGG 1 cut(s) 306
BtsCI GGATG 1 cut(s) 389
BtsIMutI CAGTG 3 cut(s) 306, 360, 547
CfoI GCGC 1 cut(s) 503
Cfr13I GGNCC 1 cut(s) 357
ClaI ATCGAT 1 cut(s) 342
Csp6I GTAC 2 cut(s) 90, 327
CviAII CATG 3 cut(s) 70, 215, 307
CviQI GTAC 2 cut(s) 90, 327
DdeI CTNAG 2 cut(s) 526, 566
DpnI GATC 5 cut(s) 135, 188, 337, 345, 414
DpnII GATC 5 cut(s) 133, 186, 335, 343, 412
Eam1104I CTCTTC 1 cut(s) 438
EarI CTCTTC 1 cut(s) 438
Ecl136II GAGCTC 1 cut(s) 565
Eco130I CCWWGG 1 cut(s) 306
Eco24I GRGCYC 2 cut(s) 262, 567
Eco47I GGWCC 1 cut(s) 357
Eco53kI GAGCTC 1 cut(s) 565
Eco88I CYCGRG 1 cut(s) 261
Eco91I GGTNACC 2 cut(s) 470, 533
EcoICRI GAGCTC 1 cut(s) 565
EcoO65I GGTNACC 2 cut(s) 470, 533
EcoRII CCWGG 1 cut(s) 417
EcoT14I CCWWGG 1 cut(s) 306
EcoT38I GRGCYC 2 cut(s) 262, 567
ErhI CCWWGG 1 cut(s) 306
FaeI CATG 3 cut(s) 73, 218, 310
FaiI YATR 4 cut(s) 71, 210, 216, 308
FatI CATG 3 cut(s) 69, 214, 306
Fnu4HI GCNGC 3 cut(s) 51, 294, 588
FokI GGATG 1 cut(s) 376
FriOI GRGCYC 2 cut(s) 262, 567
Fsp4HI GCNGC 3 cut(s) 51, 294, 588
FspBI CTAG 2 cut(s) 315, 595
GlaI GCGC 1 cut(s) 502
GluI GCNGC 3 cut(s) 51, 294, 588
GsuI CTGGAG 4 cut(s) 93, 179, 282, 399
HhaI GCGC 1 cut(s) 503
Hin1I GRCGYC 1 cut(s) 462
Hin1II CATG 3 cut(s) 73, 218, 310
Hin6I GCGC 1 cut(s) 501
HinP1I GCGC 1 cut(s) 501
HinfI GANTC 2 cut(s) 100, 123
HphI GGTGA 1 cut(s) 407
Hpy166II GTNNAC 2 cut(s) 360, 451
Hpy188I TCNGA 1 cut(s) 490
Hpy188III TCNNGA 6 cut(s) 110, 182, 247, 263, 560, 582
Hpy8I GTNNAC 2 cut(s) 360, 451
HpyAV CCTTC 1 cut(s) 488
HpyCH4III ACNGT 1 cut(s) 542
HpyCH4IV ACGT 4 cut(s) 144, 252, 462, 552
HpyCH4V TGCA 2 cut(s) 397, 451
HpyF3I CTNAG 2 cut(s) 526, 566
HpySE526I ACGT 4 cut(s) 144, 252, 462, 552
Hsp92I GRCGYC 1 cut(s) 462
Hsp92II CATG 3 cut(s) 73, 218, 310
HspAI GCGC 1 cut(s) 501
Kzo9I GATC 5 cut(s) 133, 186, 335, 343, 412
LmnI GCTCC 2 cut(s) 301, 584
Lsp1109I GCAGC 3 cut(s) 62, 280, 574
MaeI CTAG 2 cut(s) 315, 595
MaeII ACGT 4 cut(s) 144, 252, 462, 552
MaeIII GTNAC 3 cut(s) 470, 509, 533
MalI GATC 5 cut(s) 135, 188, 337, 345, 414
MboI GATC 5 cut(s) 133, 186, 335, 343, 412
MboII GAAGA 2 cut(s) 425, 490
MflI RGATCY 3 cut(s) 133, 186, 335
MhlI GDGCHC 6 cut(s) 164, 177, 262, 306, 453, 567
MluCI AATT 1 cut(s) 349
MroXI GAANNNNTTC 2 cut(s) 316, 432
MseI TTAA 1 cut(s) 156
MspA1I CMGCKG 2 cut(s) 53, 199
MspR9I CCNGG 1 cut(s) 419
MvaI CCWGG 1 cut(s) 419
NcoI CCATGG 1 cut(s) 306
NdeII GATC 5 cut(s) 133, 186, 335, 343, 412
NlaIII CATG 3 cut(s) 73, 218, 310
NlaIV GGNNCC 4 cut(s) 6, 245, 337, 358
NspI RCATGY 1 cut(s) 218
PaeR7I CTCGAG 1 cut(s) 261
PciI ACATGT 1 cut(s) 214
PcsI WCGNNNNNNNCGW 1 cut(s) 459
PdmI GAANNNNTTC 2 cut(s) 316, 432
PfeI GAWTC 2 cut(s) 100, 123
PkrI GCNGC 3 cut(s) 52, 295, 589
PscI ACATGT 1 cut(s) 214
Psp124BI GAGCTC 1 cut(s) 567
Psp1406I AACGTT 1 cut(s) 552
Psp6I CCWGG 1 cut(s) 417
PspEI GGTNACC 2 cut(s) 470, 533
PspGI CCWGG 1 cut(s) 417
PspN4I GGNNCC 4 cut(s) 6, 245, 337, 358
PspPI GGNCC 1 cut(s) 357
PsuI RGATCY 3 cut(s) 133, 186, 335
PvuII CAGCTG 2 cut(s) 53, 199
RsaI GTAC 2 cut(s) 91, 328
RsaNI GTAC 2 cut(s) 90, 327
SacI GAGCTC 1 cut(s) 567
SaqAI TTAA 1 cut(s) 156
SatI GCNGC 3 cut(s) 51, 294, 588
Sau3AI GATC 5 cut(s) 133, 186, 335, 343, 412
Sau96I GGNCC 1 cut(s) 357
ScrFI CCNGG 1 cut(s) 419
SduI GDGCHC 6 cut(s) 164, 177, 262, 306, 453, 567
SfcI CTRYAG 1 cut(s) 168
Sfr274I CTCGAG 1 cut(s) 261
SinI GGWCC 1 cut(s) 357
SlaI CTCGAG 1 cut(s) 261
SmlI CTYRAG 3 cut(s) 128, 261, 560
SmoI CTYRAG 3 cut(s) 128, 261, 560
SpeI ACTAGT 1 cut(s) 314
Sse9I AATT 1 cut(s) 349
SsiI CCGC 1 cut(s) 531
SspMI CTAG 2 cut(s) 315, 595
SstI GAGCTC 1 cut(s) 567
StyD4I CCNGG 1 cut(s) 417
StyI CCWWGG 1 cut(s) 306
TaaI ACNGT 1 cut(s) 542
TaiI ACGT 4 cut(s) 147, 255, 465, 555
TaqI TCGA 2 cut(s) 262, 342
TasI AATT 1 cut(s) 349
TfiI GAWTC 2 cut(s) 100, 123
Tru1I TTAA 1 cut(s) 156
Tru9I TTAA 1 cut(s) 156
TscAI CASTG 3 cut(s) 306, 367, 547
TseI GCWGC 3 cut(s) 50, 293, 587
TspDTI ATGAA 1 cut(s) 290
TspRI CASTG 3 cut(s) 306, 367, 547
VneI GTGCAC 1 cut(s) 449
VpaK11BI GGWCC 1 cut(s) 357
XceI RCATGY 1 cut(s) 218
XhoI CTCGAG 1 cut(s) 261
XmnI GAANNNNTTC 2 cut(s) 316, 432
XspI CTAG 2 cut(s) 315, 595
ZraI GACGTC 1 cut(s) 463
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.