Rorug06G0192300

Methyltransferase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Reverse (-)
30959746 .. 30961113
1368 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0192300.1

Sequence Viewer

Length: 528 bp
ATGGGATTTGATTGGAACCTGAAAATTGGGCAAAGTGGTGGTTTTGAGCCCCAAGTTGTAACTGAGTTGCCGCCGGAGTTATTCAAGAAACCAAAGCTGAACAAATACTATGATGCTTCTGGGTCTGCGGATACAGAAAATGGTGGTGTCTATGAGCTTCAAAATCGTAGACCGGTTATCTCTAAGAGGAATTCCGACAAACATGTGCTCTCCCCAGCAGATGTGGAGAACTGGAGGTGCGAGTTGACAATAAACAAGAACACTTCAAATTGGAGCCATCTCATGATGCAAGATGACAAGGAATCAAGAAAATTGCATGCGGCAAAGGCTTCACTTACAGGTGCTTCAAAGTGGAATGACTACGTAACCGAGGATGATAATGATGGCTTGAGAATCATCAACAGAAAAAGCCGTGAAGAGAATACAGAGCAATGGAGTAATGAAACAATAGCAAACTATGAGTATGAGACAGTAACAACTGATGAGAGGGTAGAAGATGACATCCATCCTGATTTCTTGCAAGGCTGA

Protein Analysis

175

Amino Acids

20.14

Weight (kDa)

4.9

Isoelectric Point (pI)

42.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000529)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04430 AT1G04430 AT1G04430 AT3G23300 AT3G23300 AT4G14360 AT4G14360
fragaria_vesca FvH4_2g21260 FvH4_2g21260 FvH4_2g21260 FvH4_4g03770 FvH4_4g03770 FvH4_4g03770 FvH4_4g03770 FvH4_4g03770 FvH4_4g03770
malus_domestica MD05G1195000.v1.1 MD10G1181600.v1.1 MD10G1182100.v1.1 MD13G1215000.v1.1
prunus_persica Prupe.1G040400_v2.0.a1 Prupe.1G040400_v2.0.a1 Prupe.1G040400_v2.0.a1 Prupe.1G040400_v2.0.a1 Prupe.8G221700_v2.0.a1 Prupe.8G221700_v2.0.a1 Prupe.8G221700_v2.0.a1
pyrus_communis pycom05g18230 pycom10g15760 pycom10g15770 pycom111g01800
rosa_chinensis RchiOBHm_Chr4g0393501 RchiOBHm_Chr4g0393511 RchiOBHm_Chr4g0393631 RchiOBHm_Chr6g0287841
rosa_laevigata RLG00000009742 RLG00000012463
rosa_multiflora Rmu_sc0001531.1_g000028 Rmu_sc0003877.1_g000004 Rmu_sc0007724.1_g000003 Rmu_sc0008931.1_g000001 Rmu_sc0015036.1_g000004 Rmu_sc0021463.1_g000002 Rmu_sc0023299.1_g000001 Rmu_sc0023300.1_g000001 Rmu_sc0036005.1_g000001
rosa_roxburghii Rroxscaffold_5G00338440 Rroxscaffold_5G00338470 Rroxscaffold_5G00338730 Rroxscaffold_5G00338790 Rroxscaffold_7G00180730 Rroxscaffold_7G00180820
rosa_rugosa Rorug03G0372400 Rorug03G0372500 Rorug03G0372600 Rorug04G0000100 Rorug04G0000200 Rorug04G0000300 Rorug04G0000400 Rorug04G0000500 Rorug04G0000600.1 Rorug04G0000700 Rorug04G0000800 Rorug04G0000900 Rorug06G0192300 Rorug06G0192400 Rorug06G0192500
rosa_samantha Rh4AG047800 Rh4AG048100 Rh4BG043700 Rh4BG044600 Rh4CG050500 Rh4CG050600 Rh4CG050700 Rh4CG051400 Rh4DG045000 Rh4DG045300 Rh6AG302000 Rh6BG307900 Rh6CG301600 Rh6CG315800 Rh6DG300500
rosa_wichuraiana Rw4G003770 Rw4G003800 Rw6G026090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 169
AciI CCGC 3 cut(s) 71, 128, 320
AcsI RAATTY 1 cut(s) 190
AflIII ACRYGT 1 cut(s) 202
AgeI ACCGGT 1 cut(s) 172
AgsI TTSAA 4 cut(s) 85, 161, 267, 348
AluBI AGCT 2 cut(s) 97, 157
AluI AGCT 2 cut(s) 97, 157
Alw21I GWGCWC 1 cut(s) 210
Alw26I GTCTC 1 cut(s) 461
ApoI RAATTY 1 cut(s) 190
AsiGI ACCGGT 1 cut(s) 172
BanII GRGCYC 1 cut(s) 51
Bbv12I GWGCWC 1 cut(s) 210
BccI CCATC 3 cut(s) 285, 377, 513
BceAI ACGGC 1 cut(s) 396
BciVI GTATCC 1 cut(s) 124
BcoDI GTCTC 1 cut(s) 461
BfuI GTATCC 1 cut(s) 124
BisI GCNGC 2 cut(s) 71, 321
BlsI GCNGC 2 cut(s) 72, 322
BmiI GGNNCC 2 cut(s) 17, 275
BmsI GCATC 2 cut(s) 103, 276
BpmI CTGGAG 1 cut(s) 253
BpuEI CTTGAG 1 cut(s) 409
BsaAI YACGTR 1 cut(s) 364
BsaJI CCNNGG 1 cut(s) 369
BsaWI WCCGGW 1 cut(s) 172
Bse118I RCCGGY 1 cut(s) 172
Bse1I ACTGG 1 cut(s) 236
Bse3DI GCAATG 1 cut(s) 437
BseDI CCNNGG 1 cut(s) 369
BseGI GGATG 3 cut(s) 379, 501, 505
BseMI GCAATG 1 cut(s) 437
BseMII CTCAG 1 cut(s) 54
BseNI ACTGG 1 cut(s) 236
BseYI CCCAGC 1 cut(s) 214
BshTI ACCGGT 1 cut(s) 172
BsiHKAI GWGCWC 1 cut(s) 210
BsiSI CCGG 2 cut(s) 74, 173
BsmAI GTCTC 1 cut(s) 461
Bsp1286I GDGCHC 2 cut(s) 51, 210
BspACI CCGC 3 cut(s) 71, 128, 320
BspCNI CTCAG 1 cut(s) 55
BspHI TCATGA 1 cut(s) 282
BspLI GGNNCC 2 cut(s) 17, 275
BsrDI GCAATG 1 cut(s) 437
BsrFI RCCGGY 1 cut(s) 172
BsrI ACTGG 1 cut(s) 236
BssAI RCCGGY 1 cut(s) 172
BssECI CCNNGG 1 cut(s) 369
Bst4CI ACNGT 1 cut(s) 472
Bst6I CTCTTC 1 cut(s) 411
BstBAI YACGTR 1 cut(s) 364
BstC8I GCNNGC 1 cut(s) 318
BstDEI CTNAG 2 cut(s) 63, 183
BstF5I GGATG 3 cut(s) 379, 501, 505
BstMAI GTCTC 1 cut(s) 461
BstMWI GCNNNNNNNGC 1 cut(s) 326
BstNSI RCATGY 2 cut(s) 206, 320
BstSNI TACGTA 1 cut(s) 364
BsuI GTATCC 1 cut(s) 124
BtsCI GGATG 3 cut(s) 379, 501, 505
Cac8I GCNNGC 1 cut(s) 318
CciI TCATGA 1 cut(s) 282
Cfr10I RCCGGY 1 cut(s) 172
CspAI ACCGGT 1 cut(s) 172
CviAII CATG 3 cut(s) 203, 283, 317
CviJI RGCY 8 cut(s) 49, 97, 157, 276, 329, 387, 411, 525
CviKI_1 RGCY 8 cut(s) 49, 97, 157, 276, 329, 387, 411, 525
DdeI CTNAG 2 cut(s) 63, 183
Eam1104I CTCTTC 1 cut(s) 411
EarI CTCTTC 1 cut(s) 411
Eco105I TACGTA 1 cut(s) 364
Eco24I GRGCYC 1 cut(s) 51
EcoRI GAATTC 1 cut(s) 190
EcoT38I GRGCYC 1 cut(s) 51
FaeI CATG 3 cut(s) 206, 286, 320
FaiI YATR 7 cut(s) 111, 153, 204, 284, 318, 459, 465
FatI CATG 3 cut(s) 202, 282, 316
FblI GTMKAC 1 cut(s) 169
Fnu4HI GCNGC 2 cut(s) 71, 321
FokI GGATG 3 cut(s) 386, 488, 492
FriOI GRGCYC 1 cut(s) 51
Fsp4HI GCNGC 2 cut(s) 71, 321
GluI GCNGC 2 cut(s) 71, 321
GsaI CCCAGC 1 cut(s) 218
GsuI CTGGAG 1 cut(s) 253
HapII CCGG 2 cut(s) 74, 173
Hin1II CATG 3 cut(s) 206, 286, 320
HincII GTYRAC 1 cut(s) 246
HindII GTYRAC 1 cut(s) 246
HinfI GANTC 2 cut(s) 302, 393
HpaII CCGG 2 cut(s) 74, 173
Hpy166II GTNNAC 2 cut(s) 170, 246
Hpy188I TCNGA 1 cut(s) 196
Hpy188III TCNNGA 4 cut(s) 85, 283, 306, 509
Hpy8I GTNNAC 2 cut(s) 170, 246
HpyCH4III ACNGT 1 cut(s) 472
HpyCH4IV ACGT 1 cut(s) 363
HpyCH4V TGCA 3 cut(s) 289, 316, 520
HpyF10VI GCNNNNNNNGC 1 cut(s) 326
HpyF3I CTNAG 2 cut(s) 63, 183
HpySE526I ACGT 1 cut(s) 363
Hsp92II CATG 3 cut(s) 206, 286, 320
LmnI GCTCC 1 cut(s) 273
LpnPI CCDG 8 cut(s) 32, 87, 105, 186, 217, 228, 324, 522
LweI GCATC 2 cut(s) 103, 276
MaeII ACGT 1 cut(s) 363
MaeIII GTNAC 3 cut(s) 58, 364, 472
MboII GAAGA 2 cut(s) 428, 506
MhlI GDGCHC 2 cut(s) 51, 210
MluCI AATT 4 cut(s) 24, 190, 268, 311
MmeI TCCRAC 1 cut(s) 219
MnlI CCTC 4 cut(s) 180, 228, 364, 480
MspI CCGG 2 cut(s) 74, 173
MwoI GCNNNNNNNGC 1 cut(s) 326
NlaIII CATG 3 cut(s) 206, 286, 320
NlaIV GGNNCC 2 cut(s) 17, 275
NspI RCATGY 2 cut(s) 206, 320
PaeI GCATGC 1 cut(s) 320
PagI TCATGA 1 cut(s) 282
PciI ACATGT 1 cut(s) 202
PfeI GAWTC 2 cut(s) 302, 393
PinAI ACCGGT 1 cut(s) 172
PkrI GCNGC 2 cut(s) 72, 322
Ppu21I YACGTR 1 cut(s) 364
PscI ACATGT 1 cut(s) 202
PspFI CCCAGC 1 cut(s) 214
PspN4I GGNNCC 2 cut(s) 17, 275
SatI GCNGC 2 cut(s) 71, 321
SduI GDGCHC 2 cut(s) 51, 210
SetI ASST 6 cut(s) 21, 99, 159, 239, 343, 366
SfaNI GCATC 2 cut(s) 103, 276
SmlI CTYRAG 1 cut(s) 388
SmoI CTYRAG 1 cut(s) 388
SnaBI TACGTA 1 cut(s) 364
SphI GCATGC 1 cut(s) 320
Sse9I AATT 4 cut(s) 24, 190, 268, 311
SsiI CCGC 3 cut(s) 71, 128, 320
TaaI ACNGT 1 cut(s) 472
TaiI ACGT 1 cut(s) 366
TasI AATT 4 cut(s) 24, 190, 268, 311
TauI GCSGC 2 cut(s) 73, 323
TfiI GAWTC 2 cut(s) 302, 393
TspDTI ATGAA 1 cut(s) 456
XapI RAATTY 1 cut(s) 190
XceI RCATGY 2 cut(s) 206, 320
XmiI GTMKAC 1 cut(s) 169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.