Rmu_sc0015036.1_g000004

Putative S-adenosyl-L-methionine-dependent methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0015036.1
OG0000529
Physical Location & Seq
Forward (+)
17533 .. 18076
544 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0015036.1_g000004.1.cds

Sequence Viewer

Length: 453 bp
atgatgaggggaagatctgatccagcccaaaagaagcgcgtgatcaccattctgtgtgtattggcactcttccgtgttttcctgtatgggtattatggttccatctttggctctcaaagtcatggttcatcagctctagaatatggcagtagatctttgagaaagcttggttcatcttatttgggtggggatgatgatactgatggcaagctggatgaatcttcaacaaagtatgggcaggaagatggagatgatgatgttacagtgaagagctttcccggtatccttctaaatttgtctgctgatgaattttgttttttcaaggtttgtgatgatcgccattcggaacttatcccttgcttggacagaaatctcatatatcaaatgagactgaagttggacctgtctttgatggagcactatgagaggcattgtccttctccagaaaggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Methyltransf_29 zf-C3HC4_3

Protein Analysis

150

Amino Acids

17.01

Weight (kDa)

5.54

Isoelectric Point (pI)

40.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000529)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04430 AT1G04430 AT1G04430 AT3G23300 AT3G23300 AT4G14360 AT4G14360
fragaria_vesca FvH4_2g21260 FvH4_2g21260 FvH4_2g21260 FvH4_4g03770 FvH4_4g03770 FvH4_4g03770 FvH4_4g03770 FvH4_4g03770 FvH4_4g03770
malus_domestica MD05G1195000.v1.1 MD10G1181600.v1.1 MD10G1182100.v1.1 MD13G1215000.v1.1
prunus_persica Prupe.1G040400_v2.0.a1 Prupe.1G040400_v2.0.a1 Prupe.1G040400_v2.0.a1 Prupe.1G040400_v2.0.a1 Prupe.8G221700_v2.0.a1 Prupe.8G221700_v2.0.a1 Prupe.8G221700_v2.0.a1
pyrus_communis pycom05g18230 pycom10g15760 pycom10g15770 pycom111g01800
rosa_chinensis RchiOBHm_Chr4g0393501 RchiOBHm_Chr4g0393511 RchiOBHm_Chr4g0393631 RchiOBHm_Chr6g0287841
rosa_laevigata RLG00000009742 RLG00000012463
rosa_multiflora Rmu_sc0001531.1_g000028 Rmu_sc0003877.1_g000004 Rmu_sc0007724.1_g000003 Rmu_sc0008931.1_g000001 Rmu_sc0015036.1_g000004 Rmu_sc0021463.1_g000002 Rmu_sc0023299.1_g000001 Rmu_sc0023300.1_g000001 Rmu_sc0036005.1_g000001
rosa_roxburghii Rroxscaffold_5G00338440 Rroxscaffold_5G00338470 Rroxscaffold_5G00338730 Rroxscaffold_5G00338790 Rroxscaffold_7G00180730 Rroxscaffold_7G00180820
rosa_rugosa Rorug03G0372400 Rorug03G0372500 Rorug03G0372600 Rorug04G0000100 Rorug04G0000200 Rorug04G0000300 Rorug04G0000400 Rorug04G0000500 Rorug04G0000600.1 Rorug04G0000700 Rorug04G0000800 Rorug04G0000900 Rorug06G0192300 Rorug06G0192400 Rorug06G0192500
rosa_samantha Rh4AG047800 Rh4AG048100 Rh4BG043700 Rh4BG044600 Rh4CG050500 Rh4CG050600 Rh4CG050700 Rh4CG051400 Rh4DG045000 Rh4DG045300 Rh6AG302000 Rh6BG307900 Rh6CG301600 Rh6CG315800 Rh6DG300500
rosa_wichuraiana Rw4G003770 Rw4G003800 Rw6G026090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 39
AclWI GGATC 1 cut(s) 14
AcsI RAATTY 2 cut(s) 292, 308
AcuI CTGAAG 1 cut(s) 413
AfiI CCNNNNNNNGG 1 cut(s) 361
AgsI TTSAA 2 cut(s) 225, 322
AluBI AGCT 4 cut(s) 134, 166, 211, 273
AluI AGCT 4 cut(s) 134, 166, 211, 273
Alw21I GWGCWC 1 cut(s) 420
Alw26I GTCTC 1 cut(s) 382
AlwI GGATC 1 cut(s) 14
ApoI RAATTY 2 cut(s) 292, 308
AspLEI GCGC 1 cut(s) 39
AspS9I GGNCC 1 cut(s) 400
AsuC2I CCSGG 1 cut(s) 279
AsuHPI GGTGA 1 cut(s) 37
AvaII GGWCC 1 cut(s) 400
Bbv12I GWGCWC 1 cut(s) 420
BccI CCATC 4 cut(s) 110, 197, 239, 406
BciVI GTATCC 1 cut(s) 293
BclI TGATCA 1 cut(s) 42
BcnI CCSGG 1 cut(s) 279
BcoDI GTCTC 1 cut(s) 382
BfaI CTAG 1 cut(s) 137
BfuI GTATCC 1 cut(s) 293
BglII AGATCT 2 cut(s) 14, 152
Bme1390I CCNGG 1 cut(s) 279
Bme18I GGWCC 1 cut(s) 400
BmgT120I GGNCC 1 cut(s) 400
BmiI GGNNCC 1 cut(s) 100
BmrFI CCNGG 1 cut(s) 279
BpmI CTGGAG 1 cut(s) 426
BpuMI CCSGG 1 cut(s) 279
Bsc4I CCNNNNNNNGG 1 cut(s) 361
BseGI GGATG 2 cut(s) 196, 220
BseLI CCNNNNNNNGG 1 cut(s) 361
Bsh1236I CGCG 1 cut(s) 39
BsiHKAI GWGCWC 1 cut(s) 420
BsiSI CCGG 1 cut(s) 279
BslI CCNNNNNNNGG 1 cut(s) 361
BsmAI GTCTC 1 cut(s) 382
Bsp1286I GDGCHC 1 cut(s) 420
Bsp143I GATC 5 cut(s) 14, 19, 42, 152, 334
BspFNI CGCG 1 cut(s) 39
BspLI GGNNCC 1 cut(s) 100
BspPI GGATC 1 cut(s) 14
BspQI GCTCTTC 1 cut(s) 263
BssMI GATC 5 cut(s) 14, 19, 42, 152, 334
Bst4CI ACNGT 1 cut(s) 265
Bst6I CTCTTC 2 cut(s) 74, 263
BstC8I GCNNGC 1 cut(s) 209
BstF5I GGATG 2 cut(s) 196, 220
BstFNI CGCG 1 cut(s) 39
BstHHI GCGC 1 cut(s) 39
BstKTI GATC 5 cut(s) 17, 22, 45, 155, 337
BstMAI GTCTC 1 cut(s) 382
BstMBI GATC 5 cut(s) 14, 19, 42, 152, 334
BstSCI CCNGG 1 cut(s) 277
BstUI CGCG 1 cut(s) 39
BstX2I RGATCY 2 cut(s) 14, 152
BstYI RGATCY 2 cut(s) 14, 152
BsuI GTATCC 1 cut(s) 293
BtsCI GGATG 2 cut(s) 196, 220
BtsIMutI CAGTG 1 cut(s) 270
Cac8I GCNNGC 1 cut(s) 209
CfoI GCGC 1 cut(s) 39
Cfr13I GGNCC 1 cut(s) 400
CviAII CATG 1 cut(s) 122
CviJI RGCY 6 cut(s) 26, 111, 134, 166, 211, 273
CviKI_1 RGCY 6 cut(s) 26, 111, 134, 166, 211, 273
DpnI GATC 5 cut(s) 16, 21, 44, 154, 336
DpnII GATC 5 cut(s) 14, 19, 42, 152, 334
Eam1104I CTCTTC 2 cut(s) 74, 263
EarI CTCTTC 2 cut(s) 74, 263
Eco47I GGWCC 1 cut(s) 400
Eco57I CTGAAG 1 cut(s) 413
FaeI CATG 1 cut(s) 125
FaiI YATR 8 cut(s) 87, 96, 123, 144, 234, 377, 379, 423
FatI CATG 1 cut(s) 121
FbaI TGATCA 1 cut(s) 42
FokI GGATG 2 cut(s) 203, 227
FspBI CTAG 1 cut(s) 137
GlaI GCGC 1 cut(s) 38
GsuI CTGGAG 1 cut(s) 426
HapII CCGG 1 cut(s) 279
HhaI GCGC 1 cut(s) 39
Hin1II CATG 1 cut(s) 125
Hin6I GCGC 1 cut(s) 37
HinP1I GCGC 1 cut(s) 37
HindIII AAGCTT 1 cut(s) 164
HinfI GANTC 1 cut(s) 218
HpaII CCGG 1 cut(s) 279
HphI GGTGA 1 cut(s) 37
Hpy188I TCNGA 2 cut(s) 19, 346
Hpy188III TCNNGA 2 cut(s) 137, 443
HpyAV CCTTC 2 cut(s) 296, 447
HpyCH4III ACNGT 1 cut(s) 265
Hsp92II CATG 1 cut(s) 125
HspAI GCGC 1 cut(s) 37
Ksp22I TGATCA 1 cut(s) 42
Kzo9I GATC 5 cut(s) 14, 19, 42, 152, 334
LguI GCTCTTC 1 cut(s) 263
LmnI GCTCC 1 cut(s) 415
LpnPI CCDG 6 cut(s) 36, 95, 197, 224, 292, 416
MaeI CTAG 1 cut(s) 137
MaeIII GTNAC 1 cut(s) 259
MalI GATC 5 cut(s) 16, 21, 44, 154, 336
MboI GATC 5 cut(s) 14, 19, 42, 152, 334
MboII GAAGA 5 cut(s) 24, 61, 213, 254, 280
MflI RGATCY 2 cut(s) 14, 152
MhlI GDGCHC 1 cut(s) 420
MluCI AATT 2 cut(s) 292, 308
MmeI TCCRAC 1 cut(s) 378
MnlI CCTC 1 cut(s) 420
MspI CCGG 1 cut(s) 279
MspR9I CCNGG 1 cut(s) 279
MvnI CGCG 1 cut(s) 39
NciI CCSGG 1 cut(s) 279
NdeII GATC 5 cut(s) 14, 19, 42, 152, 334
NlaIII CATG 1 cut(s) 125
NlaIV GGNNCC 1 cut(s) 100
PciSI GCTCTTC 1 cut(s) 263
PfeI GAWTC 1 cut(s) 218
PspN4I GGNNCC 1 cut(s) 100
PspPI GGNCC 1 cut(s) 400
PsuI RGATCY 2 cut(s) 14, 152
SapI GCTCTTC 1 cut(s) 263
Sau3AI GATC 5 cut(s) 14, 19, 42, 152, 334
Sau96I GGNCC 1 cut(s) 400
ScrFI CCNGG 1 cut(s) 279
SduI GDGCHC 1 cut(s) 420
SetI ASST 7 cut(s) 136, 168, 213, 275, 327, 405, 452
SinI GGWCC 1 cut(s) 400
Sse9I AATT 2 cut(s) 292, 308
SspMI CTAG 1 cut(s) 137
StyD4I CCNGG 1 cut(s) 277
TaaI ACNGT 1 cut(s) 265
TasI AATT 2 cut(s) 292, 308
TfiI GAWTC 1 cut(s) 218
TscAI CASTG 1 cut(s) 270
TspDTI ATGAA 4 cut(s) 117, 162, 231, 321
TspGWI ACGGA 1 cut(s) 62
TspRI CASTG 1 cut(s) 270
VpaK11BI GGWCC 1 cut(s) 400
XapI RAATTY 2 cut(s) 292, 308
XbaI TCTAGA 1 cut(s) 136
XspI CTAG 1 cut(s) 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.