Rroxscaffold_5G00338440

Putative S-adenosyl-L-methionine-dependent methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000529
Physical Location & Seq
Forward (+)
6574489 .. 6577380
2892 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00338440.1

Sequence Viewer

Length: 393 bp
ATGGGTATTATGGTTCCCTCTTTGGCTGGTGCATCAGCTTTAGAATATGGCAGTAGATCTTTGAGAAAGCTTGGTTCATCTTATTTGGGTGGGGATGATGATACCGATGGCAAGCTGGATGAATCTTCAACAAAGTATGGGCAGGAAGATGGAGATGATGATGTTACAGTGAAGAGCTTCCCGGTTTGTGATGATCGCCATTCGGAACTTATCCCTTGCTTGGACAGAAATCTCATATATCAAATAAGACTGAAGTTGGACCTGTCTTTGATGGAGCACTATGAGAGGCATTGTCCTTCTCCAGAAAGGCGATACAATTGCTTGATTCCTCCTCCAATAGGGTACAAGCTTGATATTGCAGGTCCCAATCAAATGGCCCCAGAGCAGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Methyltransf_29 zf-C3HC4_3

Protein Analysis

130

Amino Acids

14.52

Weight (kDa)

4.85

Isoelectric Point (pI)

50.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_29 PF03141 69 - 123 4.9e-12 Putative S-adenosyl-L-methionine-dependent methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000529)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04430 AT1G04430 AT1G04430 AT3G23300 AT3G23300 AT4G14360 AT4G14360
fragaria_vesca FvH4_2g21260 FvH4_2g21260 FvH4_2g21260 FvH4_4g03770 FvH4_4g03770 FvH4_4g03770 FvH4_4g03770 FvH4_4g03770 FvH4_4g03770
malus_domestica MD05G1195000.v1.1 MD10G1181600.v1.1 MD10G1182100.v1.1 MD13G1215000.v1.1
prunus_persica Prupe.1G040400_v2.0.a1 Prupe.1G040400_v2.0.a1 Prupe.1G040400_v2.0.a1 Prupe.1G040400_v2.0.a1 Prupe.8G221700_v2.0.a1 Prupe.8G221700_v2.0.a1 Prupe.8G221700_v2.0.a1
pyrus_communis pycom05g18230 pycom10g15760 pycom10g15770 pycom111g01800
rosa_chinensis RchiOBHm_Chr4g0393501 RchiOBHm_Chr4g0393511 RchiOBHm_Chr4g0393631 RchiOBHm_Chr6g0287841
rosa_laevigata RLG00000009742 RLG00000012463
rosa_multiflora Rmu_sc0001531.1_g000028 Rmu_sc0003877.1_g000004 Rmu_sc0007724.1_g000003 Rmu_sc0008931.1_g000001 Rmu_sc0015036.1_g000004 Rmu_sc0021463.1_g000002 Rmu_sc0023299.1_g000001 Rmu_sc0023300.1_g000001 Rmu_sc0036005.1_g000001
rosa_roxburghii Rroxscaffold_5G00338440 Rroxscaffold_5G00338470 Rroxscaffold_5G00338730 Rroxscaffold_5G00338790 Rroxscaffold_7G00180730 Rroxscaffold_7G00180820
rosa_rugosa Rorug03G0372400 Rorug03G0372500 Rorug03G0372600 Rorug04G0000100 Rorug04G0000200 Rorug04G0000300 Rorug04G0000400 Rorug04G0000500 Rorug04G0000600.1 Rorug04G0000700 Rorug04G0000800 Rorug04G0000900 Rorug06G0192300 Rorug06G0192400 Rorug06G0192500
rosa_samantha Rh4AG047800 Rh4AG048100 Rh4BG043700 Rh4BG044600 Rh4CG050500 Rh4CG050600 Rh4CG050700 Rh4CG051400 Rh4DG045000 Rh4DG045300 Rh6AG302000 Rh6BG307900 Rh6CG301600 Rh6CG315800 Rh6DG300500
rosa_wichuraiana Rw4G003770 Rw4G003800 Rw6G026090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 350
AcuI CTGAAG 1 cut(s) 272
AfaI GTAC 1 cut(s) 344
AfiI CCNNNNNNNGG 2 cut(s) 220, 338
AgsI TTSAA 1 cut(s) 129
AluBI AGCT 5 cut(s) 38, 70, 115, 177, 349
AluI AGCT 5 cut(s) 38, 70, 115, 177, 349
Alw21I GWGCWC 1 cut(s) 279
AoxI GGCC 1 cut(s) 375
Asp700I GAANNNNTTC 1 cut(s) 176
AspS9I GGNCC 3 cut(s) 259, 362, 376
AsuC2I CCSGG 1 cut(s) 182
AvaII GGWCC 2 cut(s) 259, 362
Bbv12I GWGCWC 1 cut(s) 279
BccI CCATC 3 cut(s) 101, 143, 265
BcgI CGANNNNNNTGC 2 cut(s) 300, 334
BcnI CCSGG 1 cut(s) 182
BfuAI ACCTGC 1 cut(s) 350
BglII AGATCT 1 cut(s) 56
Bme1390I CCNGG 1 cut(s) 182
Bme18I GGWCC 2 cut(s) 259, 362
BmgT120I GGNCC 3 cut(s) 259, 362, 376
BmiI GGNNCC 3 cut(s) 15, 364, 378
BmrFI CCNGG 1 cut(s) 182
BmsI GCATC 1 cut(s) 41
BpmI CTGGAG 1 cut(s) 285
BpuMI CCSGG 1 cut(s) 182
Bsc4I CCNNNNNNNGG 2 cut(s) 220, 338
BseGI GGATG 2 cut(s) 100, 124
BseLI CCNNNNNNNGG 2 cut(s) 220, 338
BseRI GAGGAG 1 cut(s) 321
BshFI GGCC 1 cut(s) 377
BsiHKAI GWGCWC 1 cut(s) 279
BsiSI CCGG 1 cut(s) 182
BslFI GGGAC 1 cut(s) 348
BslI CCNNNNNNNGG 2 cut(s) 220, 338
BsmFI GGGAC 1 cut(s) 348
BsnI GGCC 1 cut(s) 377
Bsp1286I GDGCHC 1 cut(s) 279
Bsp143I GATC 2 cut(s) 56, 193
BspANI GGCC 1 cut(s) 377
BspLI GGNNCC 3 cut(s) 15, 364, 378
BspMI ACCTGC 1 cut(s) 350
BspQI GCTCTTC 1 cut(s) 167
BssMI GATC 2 cut(s) 56, 193
Bst4CI ACNGT 1 cut(s) 169
Bst6I CTCTTC 1 cut(s) 167
BstC8I GCNNGC 1 cut(s) 113
BstENI CCTNNNNNAGG 1 cut(s) 336
BstF5I GGATG 2 cut(s) 100, 124
BstKTI GATC 2 cut(s) 59, 196
BstMBI GATC 2 cut(s) 56, 193
BstSCI CCNGG 1 cut(s) 180
BstX2I RGATCY 1 cut(s) 56
BstXI CCANNNNNNTGG 1 cut(s) 373
BstYI RGATCY 1 cut(s) 56
BsuRI GGCC 1 cut(s) 377
BtsCI GGATG 2 cut(s) 100, 124
BtsIMutI CAGTG 1 cut(s) 174
BveI ACCTGC 1 cut(s) 350
Cac8I GCNNGC 1 cut(s) 113
Cfr13I GGNCC 3 cut(s) 259, 362, 376
Csp6I GTAC 1 cut(s) 343
CviJI RGCY 7 cut(s) 26, 38, 70, 115, 177, 349, 377
CviKI_1 RGCY 7 cut(s) 26, 38, 70, 115, 177, 349, 377
CviQI GTAC 1 cut(s) 343
DpnI GATC 2 cut(s) 58, 195
DpnII GATC 2 cut(s) 56, 193
Eam1104I CTCTTC 1 cut(s) 167
EarI CTCTTC 1 cut(s) 167
Eco47I GGWCC 2 cut(s) 259, 362
Eco57I CTGAAG 1 cut(s) 272
EcoNI CCTNNNNNAGG 1 cut(s) 336
EcoO109I RGGNCCY 1 cut(s) 362
FaiI YATR 6 cut(s) 11, 48, 138, 236, 238, 282
FaqI GGGAC 1 cut(s) 348
FokI GGATG 2 cut(s) 107, 131
GsuI CTGGAG 1 cut(s) 285
HaeIII GGCC 1 cut(s) 377
HapII CCGG 1 cut(s) 182
HindIII AAGCTT 2 cut(s) 68, 347
HinfI GANTC 2 cut(s) 122, 325
HpaII CCGG 1 cut(s) 182
Hpy188I TCNGA 1 cut(s) 205
Hpy188III TCNNGA 1 cut(s) 302
HpyAV CCTTC 1 cut(s) 306
HpyCH4III ACNGT 1 cut(s) 169
HpyCH4V TGCA 2 cut(s) 32, 359
Kzo9I GATC 2 cut(s) 56, 193
LguI GCTCTTC 1 cut(s) 167
LmnI GCTCC 1 cut(s) 274
LpnPI CCDG 7 cut(s) 12, 101, 128, 195, 275, 315, 345
LweI GCATC 1 cut(s) 41
MaeIII GTNAC 1 cut(s) 163
MalI GATC 2 cut(s) 58, 195
MboI GATC 2 cut(s) 56, 193
MboII GAAGA 3 cut(s) 117, 158, 184
MfeI CAATTG 1 cut(s) 316
MflI RGATCY 1 cut(s) 56
MhlI GDGCHC 1 cut(s) 279
MluCI AATT 1 cut(s) 316
MmeI TCCRAC 1 cut(s) 237
MnlI CCTC 4 cut(s) 28, 279, 339, 342
MroXI GAANNNNTTC 1 cut(s) 176
MspI CCGG 1 cut(s) 182
MspR9I CCNGG 1 cut(s) 182
MunI CAATTG 1 cut(s) 316
NciI CCSGG 1 cut(s) 182
NdeII GATC 2 cut(s) 56, 193
NlaIV GGNNCC 3 cut(s) 15, 364, 378
PciSI GCTCTTC 1 cut(s) 167
PdmI GAANNNNTTC 1 cut(s) 176
PfeI GAWTC 2 cut(s) 122, 325
PpuMI RGGWCCY 1 cut(s) 362
Psp5II RGGWCCY 1 cut(s) 362
PspN4I GGNNCC 3 cut(s) 15, 364, 378
PspPI GGNCC 3 cut(s) 259, 362, 376
PspPPI RGGWCCY 1 cut(s) 362
PsuI RGATCY 1 cut(s) 56
RsaI GTAC 1 cut(s) 344
RsaNI GTAC 1 cut(s) 343
SapI GCTCTTC 1 cut(s) 167
Sau3AI GATC 2 cut(s) 56, 193
Sau96I GGNCC 3 cut(s) 259, 362, 376
ScrFI CCNGG 1 cut(s) 182
SduI GDGCHC 1 cut(s) 279
SetI ASST 7 cut(s) 40, 72, 117, 179, 264, 351, 364
SfaNI GCATC 1 cut(s) 41
SinI GGWCC 2 cut(s) 259, 362
Sse9I AATT 1 cut(s) 316
StyD4I CCNGG 1 cut(s) 180
TaaI ACNGT 1 cut(s) 169
TasI AATT 1 cut(s) 316
TfiI GAWTC 2 cut(s) 122, 325
TscAI CASTG 1 cut(s) 174
TspDTI ATGAA 2 cut(s) 66, 135
TspRI CASTG 1 cut(s) 174
VpaK11BI GGWCC 2 cut(s) 259, 362
XagI CCTNNNNNAGG 1 cut(s) 336
XmnI GAANNNNTTC 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.