RLG00000012463

Methyltransferase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Forward (+)
19042450 .. 19044218
1769 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012463

Sequence Viewer

Length: 1215 bp
ATGTCGCGGGGACGAGCTGATGATGGCTCAAAGAAACGTTTGGTCACCTCAGTTCTAATTTTGGTGATTATTTGTGGTGGGTTGTACATGTATACTAAAAGAAATGGTTCCACCGCTTTGGAGTACAGCAGTAAAATAAGAAAATTCGGTTCTACTTACTTGGGTGGGGATGAAGAGGTTGACGAGACACCTCCCAAACTCGGTGAAGATGAAGATGATGGTGTTATACTGAAGAGCATACCGGTTTGTGATGATAGACATTCAGAATTAATTCCTTGCTTAGACAGAAATCTTATTTACCAGACAAGGTTGAAGTTGGATCTGTCTTTGATGGAACATTATGAGAGACACTGCCCTGCGCCTGAAAGGCGATTTAACTGTTTAATTCCTCCCCCACCTGGATACAAGATCCCCATCAAGTGGCCTAAAAGCAGAGATGAGGTATGGAAAGCAAATATACCTCATACTCACCTTGCAAAAGAGAAGTCTGACCAAAAGTGGATGGTTGTCAAAGGTGAAAAGATTGGATTTCCTGGAGGAGGTACTCACTTTCATTATGGAGCTGATAAGTACATTGCAGCAATGGCTAATATGCTCAACTTTCCTAAGAATAATTTAAACAATGAGGGAAATCTTCGGACAGTCCTTGATGTTGGCTGTGGTGTTGCTAGTTTTGGAGGTTACCTGCTGTCTTCAGATATCATTGCAATGTCCTTGGCACCTAATGATGTCCATCAAAATCAGATCCAGTTTGCTTTAGAAAGAGGAATTCCTGCATATCTTGGTGTTCTAGGGACAAAGAGACTCCCTTACCCAAGTCGATCTTTTGAACTGGCACATTGTTCTCGCTGTAGGATTGACTGGCTTCAAAGGGATGGGATACTTCTTCTTGAGCTAGACAGGGTACTCAGACCAGGAGGCTATTTTGCCTACTCATCTCCTGAAGCCTATGCACAGGATGAGGAGGATCTGAGAATATGGAAGCAGATGAGTGCCCTTGTGGAACGGATGTGTTGGAAAATAGCTGCTAAAAAGAACCAAACTGTTATTTGGGAAAAGCCCATGACTAATGATTGTTACATGGCAAGAGAGCCTGGAACTCAACCTCCGCTTTGTAAATCGGATGCTGATCCAGATGCCACCTGGGATGTGAAAATGGAGGCTTGCATCACTCCATACACTGAAAGTTTCAGTATGAAAACCAACACCTCGTAA

Protein Analysis

405

Amino Acids

45.65

Weight (kDa)

7.08

Isoelectric Point (pI)

43.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_29 PF03141 89 - 398 1.6e-143 Putative S-adenosyl-L-methionine-dependent methyltransferase
Methyltransf_11 PF08241 216 - 310 1.6e-06 Methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000529)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04430 AT1G04430 AT1G04430 AT3G23300 AT3G23300 AT4G14360 AT4G14360
fragaria_vesca FvH4_2g21260 FvH4_2g21260 FvH4_2g21260 FvH4_4g03770 FvH4_4g03770 FvH4_4g03770 FvH4_4g03770 FvH4_4g03770 FvH4_4g03770
malus_domestica MD05G1195000.v1.1 MD10G1181600.v1.1 MD10G1182100.v1.1 MD13G1215000.v1.1
prunus_persica Prupe.1G040400_v2.0.a1 Prupe.1G040400_v2.0.a1 Prupe.1G040400_v2.0.a1 Prupe.1G040400_v2.0.a1 Prupe.8G221700_v2.0.a1 Prupe.8G221700_v2.0.a1 Prupe.8G221700_v2.0.a1
pyrus_communis pycom05g18230 pycom10g15760 pycom10g15770 pycom111g01800
rosa_chinensis RchiOBHm_Chr4g0393501 RchiOBHm_Chr4g0393511 RchiOBHm_Chr4g0393631 RchiOBHm_Chr6g0287841
rosa_laevigata RLG00000009742 RLG00000012463
rosa_multiflora Rmu_sc0001531.1_g000028 Rmu_sc0003877.1_g000004 Rmu_sc0007724.1_g000003 Rmu_sc0008931.1_g000001 Rmu_sc0015036.1_g000004 Rmu_sc0021463.1_g000002 Rmu_sc0023299.1_g000001 Rmu_sc0023300.1_g000001 Rmu_sc0036005.1_g000001
rosa_roxburghii Rroxscaffold_5G00338440 Rroxscaffold_5G00338470 Rroxscaffold_5G00338730 Rroxscaffold_5G00338790 Rroxscaffold_7G00180730 Rroxscaffold_7G00180820
rosa_rugosa Rorug03G0372400 Rorug03G0372500 Rorug03G0372600 Rorug04G0000100 Rorug04G0000200 Rorug04G0000300 Rorug04G0000400 Rorug04G0000500 Rorug04G0000600.1 Rorug04G0000700 Rorug04G0000800 Rorug04G0000900 Rorug06G0192300 Rorug06G0192400 Rorug06G0192500
rosa_samantha Rh4AG047800 Rh4AG048100 Rh4BG043700 Rh4BG044600 Rh4CG050500 Rh4CG050600 Rh4CG050700 Rh4CG051400 Rh4DG045000 Rh4DG045300 Rh6AG302000 Rh6BG307900 Rh6CG301600 Rh6CG315800 Rh6DG300500
rosa_wichuraiana Rw4G003770 Rw4G003800 Rw6G026090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 693
AccB1I GGYRCC 1 cut(s) 718
AccB7I CCANNNNNTGG 1 cut(s) 420
AccI GTMKAC 1 cut(s) 92
AccII CGCG 1 cut(s) 7
AciI CCGC 3 cut(s) 7, 114, 1109
AclI AACGTT 1 cut(s) 37
AclWI GGATC 5 cut(s) 327, 403, 739, 975, 1124
AcsI RAATTY 2 cut(s) 143, 768
AcuI CTGAAG 3 cut(s) 251, 678, 963
AfaI GTAC 5 cut(s) 86, 125, 544, 572, 906
AfiI CCNNNNNNNGG 4 cut(s) 200, 398, 420, 539
AflIII ACRYGT 1 cut(s) 87
AgeI ACCGGT 1 cut(s) 241
AgsI TTSAA 3 cut(s) 313, 830, 869
AjnI CCWGG 5 cut(s) 397, 532, 913, 1093, 1142
AloI GAACNNNNNNTCC 2 cut(s) 1090, 1122
AluBI AGCT 4 cut(s) 17, 563, 895, 1025
AluI AGCT 4 cut(s) 17, 563, 895, 1025
Alw26I GTCTC 3 cut(s) 179, 340, 796
AlwI GGATC 5 cut(s) 327, 403, 739, 975, 1124
AoxI GGCC 1 cut(s) 422
ApeKI GCWGC 2 cut(s) 578, 1025
ApoI RAATTY 2 cut(s) 143, 768
ArsI GACNNNNNNTTYG 2 cut(s) 470, 502
AseI ATTAAT 1 cut(s) 269
AsiGI ACCGGT 1 cut(s) 241
Asp700I GAANNNNTTC 2 cut(s) 106, 270
AspLEI GCGC 1 cut(s) 361
AsuHPI GGTGA 5 cut(s) 37, 76, 215, 461, 527
BaeGI GKGCMC 1 cut(s) 997
BanI GGYRCC 1 cut(s) 718
BbsI GAAGAC 1 cut(s) 684
BbvI GCAGC 2 cut(s) 590, 1012
BccI CCATC 7 cut(s) 17, 212, 325, 422, 496, 741, 869
BciT130I CCWGG 5 cut(s) 399, 534, 915, 1095, 1144
BciVI GTATCC 2 cut(s) 395, 873
BcoDI GTCTC 3 cut(s) 179, 340, 796
BfaI CTAG 3 cut(s) 669, 791, 896
BfmI CTRYAG 1 cut(s) 850
BfuAI ACCTGC 1 cut(s) 693
BfuI GTATCC 2 cut(s) 395, 873
BglI GCCNNNNNGGC 1 cut(s) 367
BisI GCNGC 2 cut(s) 579, 1026
BlsI GCNGC 2 cut(s) 580, 1027
Bme1390I CCNGG 5 cut(s) 399, 534, 915, 1095, 1144
BmiI GGNNCC 2 cut(s) 109, 720
BmrFI CCNGG 5 cut(s) 399, 534, 915, 1095, 1144
BmsI GCATC 3 cut(s) 1114, 1126, 1176
BpiI GAAGAC 1 cut(s) 684
BpmI CTGGAG 1 cut(s) 555
BpuEI CTTGAG 1 cut(s) 911
BsaBI GATNNNNATC 3 cut(s) 413, 732, 1128
BsaJI CCNNGG 2 cut(s) 714, 1143
BsaWI WCCGGW 1 cut(s) 241
BsaXI ACNNNNNCTCC 2 cut(s) 1090, 1120
Bsc4I CCNNNNNNNGG 4 cut(s) 200, 398, 420, 539
Bse118I RCCGGY 1 cut(s) 241
Bse1I ACTGG 3 cut(s) 748, 837, 866
Bse3DI GCAATG 4 cut(s) 573, 588, 702, 714
Bse8I GATNNNNATC 3 cut(s) 413, 732, 1128
BseBI CCWGG 5 cut(s) 399, 534, 915, 1095, 1144
BseDI CCNNGG 2 cut(s) 714, 1143
BseGI GGATG 7 cut(s) 175, 507, 880, 964, 1014, 1129, 1153
BseJI GATNNNNATC 3 cut(s) 413, 732, 1128
BseLI CCNNNNNNNGG 4 cut(s) 200, 398, 420, 539
BseMI GCAATG 4 cut(s) 573, 588, 702, 714
BseMII CTCAG 3 cut(s) 63, 922, 962
BseNI ACTGG 3 cut(s) 748, 837, 866
BseRI GAGGAG 2 cut(s) 552, 977
BseSI GKGCMC 1 cut(s) 997
BseXI GCAGC 2 cut(s) 590, 1012
Bsh1236I CGCG 1 cut(s) 7
BshFI GGCC 1 cut(s) 424
BshNI GGYRCC 1 cut(s) 718
BshTI ACCGGT 1 cut(s) 241
BsiSI CCGG 1 cut(s) 242
BslFI GGGAC 2 cut(s) 24, 808
BslI CCNNNNNNNGG 4 cut(s) 200, 398, 420, 539
BsmAI GTCTC 3 cut(s) 179, 340, 796
BsmFI GGGAC 2 cut(s) 24, 808
BsnI GGCC 1 cut(s) 424
Bsp1286I GDGCHC 1 cut(s) 997
Bsp1407I TGTACA 1 cut(s) 84
Bsp143I GATC 6 cut(s) 319, 408, 744, 821, 967, 1129
BspACI CCGC 3 cut(s) 7, 114, 1109
BspANI GGCC 1 cut(s) 424
BspCNI CTCAG 3 cut(s) 62, 921, 963
BspFNI CGCG 1 cut(s) 7
BspLI GGNNCC 2 cut(s) 109, 720
BspMI ACCTGC 1 cut(s) 693
BspPI GGATC 5 cut(s) 327, 403, 739, 975, 1124
BspQI GCTCTTC 1 cut(s) 227
BspT107I GGYRCC 1 cut(s) 718
BsrDI GCAATG 4 cut(s) 573, 588, 702, 714
BsrFI RCCGGY 1 cut(s) 241
BsrGI TGTACA 1 cut(s) 84
BsrI ACTGG 3 cut(s) 748, 837, 866
BssAI RCCGGY 1 cut(s) 241
BssECI CCNNGG 2 cut(s) 714, 1143
BssMI GATC 6 cut(s) 319, 408, 744, 821, 967, 1129
BssNAI GTATAC 1 cut(s) 93
BssT1I CCWWGG 1 cut(s) 714
Bst1107I GTATAC 1 cut(s) 93
Bst2UI CCWGG 5 cut(s) 399, 534, 915, 1095, 1144
Bst4CI ACNGT 3 cut(s) 380, 643, 1045
Bst6I CTCTTC 2 cut(s) 168, 227
BstAUI TGTACA 1 cut(s) 84
BstC8I GCNNGC 1 cut(s) 1165
BstDEI CTNAG 5 cut(s) 49, 280, 606, 908, 971
BstEII GGTNACC 2 cut(s) 43, 680
BstENI CCTNNNNNAGG 1 cut(s) 537
BstF5I GGATG 7 cut(s) 175, 507, 880, 964, 1014, 1129, 1153
BstFNI CGCG 1 cut(s) 7
BstHHI GCGC 1 cut(s) 361
BstKTI GATC 6 cut(s) 322, 411, 747, 824, 970, 1132
BstMAI GTCTC 3 cut(s) 179, 340, 796
BstMBI GATC 6 cut(s) 319, 408, 744, 821, 967, 1129
BstMWI GCNNNNNNNGC 2 cut(s) 367, 584
BstNI CCWGG 5 cut(s) 399, 534, 915, 1095, 1144
BstNSI RCATGY 1 cut(s) 91
BstPI GGTNACC 2 cut(s) 43, 680
BstSCI CCNGG 5 cut(s) 397, 532, 913, 1093, 1142
BstSFI CTRYAG 1 cut(s) 850
BstSLI GKGCMC 1 cut(s) 997
BstUI CGCG 1 cut(s) 7
BstV1I GCAGC 2 cut(s) 590, 1012
BstV2I GAAGAC 1 cut(s) 684
BstX2I RGATCY 4 cut(s) 319, 408, 744, 967
BstXI CCANNNNNNTGG 1 cut(s) 118
BstYI RGATCY 4 cut(s) 319, 408, 744, 967
BstZ17I GTATAC 1 cut(s) 93
BsuI GTATCC 2 cut(s) 395, 873
BsuRI GGCC 1 cut(s) 424
BtsCI GGATG 7 cut(s) 175, 507, 880, 964, 1014, 1129, 1153
BtsI GCAGTG 1 cut(s) 349
BtsIMutI CAGTG 2 cut(s) 349, 1179
BveI ACCTGC 1 cut(s) 693
Cac8I GCNNGC 1 cut(s) 1165
CfoI GCGC 1 cut(s) 361
Cfr10I RCCGGY 1 cut(s) 241
Csp6I GTAC 5 cut(s) 85, 124, 543, 571, 905
CspAI ACCGGT 1 cut(s) 241
CviAII CATG 3 cut(s) 88, 1063, 1081
CviQI GTAC 5 cut(s) 85, 124, 543, 571, 905
DdeI CTNAG 5 cut(s) 49, 280, 606, 908, 971
DpnI GATC 6 cut(s) 321, 410, 746, 823, 969, 1131
DpnII GATC 6 cut(s) 319, 408, 744, 821, 967, 1129
DraI TTTAAA 1 cut(s) 618
Eam1104I CTCTTC 2 cut(s) 168, 227
EarI CTCTTC 2 cut(s) 168, 227
Eco130I CCWWGG 1 cut(s) 714
Eco32I GATATC 1 cut(s) 700
Eco57I CTGAAG 3 cut(s) 251, 678, 963
Eco91I GGTNACC 2 cut(s) 43, 680
EcoNI CCTNNNNNAGG 1 cut(s) 537
EcoO65I GGTNACC 2 cut(s) 43, 680
EcoRI GAATTC 1 cut(s) 768
EcoRII CCWGG 5 cut(s) 397, 532, 913, 1093, 1142
EcoRV GATATC 1 cut(s) 700
EcoT14I CCWWGG 1 cut(s) 714
ErhI CCWWGG 1 cut(s) 714
FaeI CATG 3 cut(s) 91, 1066, 1084
FalI AAGNNNNNCTT 2 cut(s) 808, 840
FaqI GGGAC 2 cut(s) 24, 808
FatI CATG 3 cut(s) 87, 1062, 1080
FblI GTMKAC 1 cut(s) 92
Fnu4HI GCNGC 2 cut(s) 579, 1026
FokI GGATG 7 cut(s) 182, 514, 887, 971, 1021, 1136, 1160
Fsp4HI GCNGC 2 cut(s) 579, 1026
FspBI CTAG 3 cut(s) 669, 791, 896
GlaI GCGC 1 cut(s) 360
GluI GCNGC 2 cut(s) 579, 1026
GsuI CTGGAG 1 cut(s) 555
HaeIII GGCC 1 cut(s) 424
HapII CCGG 1 cut(s) 242
HhaI GCGC 1 cut(s) 361
Hin1II CATG 3 cut(s) 91, 1066, 1084
Hin6I GCGC 1 cut(s) 359
HinP1I GCGC 1 cut(s) 359
HincII GTYRAC 1 cut(s) 181
HindII GTYRAC 1 cut(s) 181
HinfI GANTC 1 cut(s) 804
HpaII CCGG 1 cut(s) 242
HphI GGTGA 5 cut(s) 37, 76, 215, 461, 527
Hpy166II GTNNAC 2 cut(s) 93, 181
Hpy188I TCNGA 8 cut(s) 265, 490, 639, 697, 744, 911, 972, 1123
Hpy188III TCNNGA 3 cut(s) 890, 941, 1133
Hpy8I GTNNAC 2 cut(s) 93, 181
HpyCH4III ACNGT 3 cut(s) 380, 643, 1045
HpyCH4IV ACGT 1 cut(s) 37
HpyCH4V TGCA 6 cut(s) 476, 578, 707, 776, 953, 1167
HpyF10VI GCNNNNNNNGC 2 cut(s) 367, 584
HpyF3I CTNAG 5 cut(s) 49, 280, 606, 908, 971
HpySE526I ACGT 1 cut(s) 37
Hsp92II CATG 3 cut(s) 91, 1066, 1084
HspAI GCGC 1 cut(s) 359
Kzo9I GATC 6 cut(s) 319, 408, 744, 821, 967, 1129
LguI GCTCTTC 1 cut(s) 227
LmnI GCTCC 1 cut(s) 560
Lsp1109I GCAGC 2 cut(s) 590, 1012
LweI GCATC 3 cut(s) 1114, 1126, 1176
MaeI CTAG 3 cut(s) 669, 791, 896
MaeII ACGT 1 cut(s) 37
MaeIII GTNAC 3 cut(s) 43, 680, 1076
MalI GATC 6 cut(s) 321, 410, 746, 823, 969, 1131
MboI GATC 6 cut(s) 319, 408, 744, 821, 967, 1129
MboII GAAGA 7 cut(s) 185, 218, 224, 244, 626, 684, 878
MflI RGATCY 4 cut(s) 319, 408, 744, 967
MhlI GDGCHC 1 cut(s) 997
MluCI AATT 7 cut(s) 57, 143, 266, 270, 384, 613, 768
MlyI GAGTC 1 cut(s) 798
MmeI TCCRAC 2 cut(s) 297, 995
MroXI GAANNNNTTC 2 cut(s) 106, 270
MseI TTAA 4 cut(s) 269, 375, 383, 617
MslI CAYNNNNRTG 1 cut(s) 707
MspI CCGG 1 cut(s) 242
MspR9I CCNGG 5 cut(s) 399, 534, 915, 1095, 1144
MvaI CCWGG 5 cut(s) 399, 534, 915, 1095, 1144
MvnI CGCG 1 cut(s) 7
MwoI GCNNNNNNNGC 2 cut(s) 367, 584
NdeII GATC 6 cut(s) 319, 408, 744, 821, 967, 1129
NlaIII CATG 3 cut(s) 91, 1066, 1084
NlaIV GGNNCC 2 cut(s) 109, 720
NmuCI GTSAC 1 cut(s) 43
NspI RCATGY 1 cut(s) 91
PciI ACATGT 1 cut(s) 87
PciSI GCTCTTC 1 cut(s) 227
PdmI GAANNNNTTC 2 cut(s) 106, 270
PflMI CCANNNNNTGG 1 cut(s) 420
PfoI TCCNGGA 1 cut(s) 532
PinAI ACCGGT 1 cut(s) 241
PkrI GCNGC 2 cut(s) 580, 1027
PleI GAGTC 1 cut(s) 798
PpsI GAGTC 1 cut(s) 798
PscI ACATGT 1 cut(s) 87
PshBI ATTAAT 1 cut(s) 269
Psp1406I AACGTT 1 cut(s) 37
Psp6I CCWGG 5 cut(s) 397, 532, 913, 1093, 1142
PspEI GGTNACC 2 cut(s) 43, 680
PspGI CCWGG 5 cut(s) 397, 532, 913, 1093, 1142
PspN4I GGNNCC 2 cut(s) 109, 720
PsuI RGATCY 4 cut(s) 319, 408, 744, 967
RsaI GTAC 5 cut(s) 86, 125, 544, 572, 906
RsaNI GTAC 5 cut(s) 85, 124, 543, 571, 905
RseI CAYNNNNRTG 1 cut(s) 707
SapI GCTCTTC 1 cut(s) 227
SaqAI TTAA 4 cut(s) 269, 375, 383, 617
SatI GCNGC 2 cut(s) 579, 1026
Sau3AI GATC 6 cut(s) 319, 408, 744, 821, 967, 1129
SchI GAGTC 1 cut(s) 798
ScrFI CCNGG 5 cut(s) 399, 534, 915, 1095, 1144
SduI GDGCHC 1 cut(s) 997
SfaNI GCATC 3 cut(s) 1114, 1126, 1176
SfcI CTRYAG 1 cut(s) 850
SmiMI CAYNNNNRTG 1 cut(s) 707
SmlI CTYRAG 1 cut(s) 890
SmoI CTYRAG 1 cut(s) 890
Sse9I AATT 7 cut(s) 57, 143, 266, 270, 384, 613, 768
SsiI CCGC 3 cut(s) 7, 114, 1109
SspMI CTAG 3 cut(s) 669, 791, 896
StyD4I CCNGG 5 cut(s) 397, 532, 913, 1093, 1142
StyI CCWWGG 1 cut(s) 714
TaaI ACNGT 3 cut(s) 380, 643, 1045
TaiI ACGT 1 cut(s) 40
TaqI TCGA 1 cut(s) 820
TasI AATT 7 cut(s) 57, 143, 266, 270, 384, 613, 768
TatI WGTACW 3 cut(s) 84, 123, 570
Tru1I TTAA 4 cut(s) 269, 375, 383, 617
Tru9I TTAA 4 cut(s) 269, 375, 383, 617
TscAI CASTG 2 cut(s) 356, 1186
TseFI GTSAC 1 cut(s) 43
TseI GCWGC 2 cut(s) 578, 1025
Tsp45I GTSAC 1 cut(s) 43
TspDTI ATGAA 4 cut(s) 186, 225, 542, 1211
TspGWI ACGGA 1 cut(s) 1021
TspRI CASTG 2 cut(s) 356, 1186
Van91I CCANNNNNTGG 1 cut(s) 420
VspI ATTAAT 1 cut(s) 269
XagI CCTNNNNNAGG 1 cut(s) 537
XapI RAATTY 2 cut(s) 143, 768
XceI RCATGY 1 cut(s) 91
XcmI CCANNNNNNNNNTGG 1 cut(s) 1140
XmiI GTMKAC 1 cut(s) 92
XmnI GAANNNNTTC 2 cut(s) 106, 270
XspI CTAG 3 cut(s) 669, 791, 896
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.